Oct-22 16:05:17.149 [main] DEBUG nextflow.cli.Launcher - $> nextflow run /mnt/sdd2/tsrnasearch_original/tsRNAsearch/ --species human --input_dir data --output_dir Results --layout layout/Layout.csv
Oct-22 16:05:17.204 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 21.10.6
Oct-22 16:05:17.841 [main] INFO  nextflow.cli.CmdRun - Launching `/mnt/sdd2/tsrnasearch_original/tsRNAsearch/main.nf` [sad_stonebraker] - revision: a66cf84664
Oct-22 16:05:17.854 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /mnt/sdd2/tsrnasearch_original/tsRNAsearch/nextflow.config
Oct-22 16:05:17.855 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /mnt/sdd2/tsrnasearch_original/tsRNAsearch/nextflow.config
Oct-22 16:05:17.865 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard`
Oct-22 16:05:17.940 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; plugins-dir=/home/sharada/.nextflow/plugins
Oct-22 16:05:17.942 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
Oct-22 16:05:17.954 [main] INFO  org.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Oct-22 16:05:17.956 [main] INFO  org.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Oct-22 16:05:17.960 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode
Oct-22 16:05:17.972 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
Oct-22 16:05:18.036 [main] DEBUG nextflow.Session - Session uuid: f63781fe-bbbe-4ed9-bf49-3dea29f63f16
Oct-22 16:05:18.036 [main] DEBUG nextflow.Session - Run name: sad_stonebraker
Oct-22 16:05:18.037 [main] DEBUG nextflow.Session - Executor pool size: 28
Oct-22 16:05:18.062 [main] DEBUG nextflow.cli.CmdRun - 
  Version: 21.10.6 build 5660
  Created: 21-12-2021 16:55 UTC (16:55 IST)
  System: Linux 5.4.0-150-generic
  Runtime: Groovy 3.0.9 on OpenJDK 64-Bit Server VM 11.0.1+13-LTS
  Encoding: UTF-8 (UTF-8)
  Process: 5830@sharada [127.0.1.1]
  CPUs: 28 - Mem: 187.4 GB (6.6 GB) - Swap: 2 GB (2 GB)
Oct-22 16:05:18.091 [main] DEBUG nextflow.Session - Work-dir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work [fuseblk]
Oct-22 16:05:18.117 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
Oct-22 16:05:18.130 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
Oct-22 16:05:18.161 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 29; maxThreads: 1000
Oct-22 16:05:19.453 [main] DEBUG nextflow.Session - Session start invoked
Oct-22 16:05:20.032 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Oct-22 16:05:21.905 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:21.906 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:21.911 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
Oct-22 16:05:21.918 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=28; memory=187.4 GB; capacity=28; pollInterval=100ms; dumpInterval=5m
Oct-22 16:05:21.948 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 29; maxThreads: 1000
Oct-22 16:05:22.018 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.018 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.025 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.025 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.035 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:big_mem` matches labels `big_mem` for process with name MAKE_STAR_DB
Oct-22 16:05:22.037 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.037 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.044 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.044 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.050 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.050 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.055 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.055 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.060 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.061 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.067 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.067 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.072 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.072 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.109 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.110 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.119 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.119 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.124 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.124 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.128 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.128 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.137 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.137 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.146 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.146 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.155 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.155 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.162 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.162 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.167 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.167 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.170 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.171 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.174 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.174 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.180 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.180 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.185 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.185 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.191 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.192 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.195 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.195 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.199 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.199 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.203 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.203 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.206 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.207 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.210 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.210 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.213 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.214 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.218 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.219 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.222 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.222 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.225 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.225 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.228 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.229 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.233 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.233 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.238 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.238 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.241 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.241 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.244 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.244 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.248 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.248 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.252 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.252 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.256 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
Oct-22 16:05:22.256 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
Oct-22 16:05:22.264 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: FEATURE_COUNT_TRNA, STACKED_BARPLOTS, FEATURE_COUNT_NCRNA, GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES, BARPLOTS, MAKE_STAR_DB, GENERATE_RESULTS_PDF_GROUPS, PLOT_TRNA_ALL_PLOTS, PLOT_TRNAS, BAM_SPLIT, BAM_COLLAPSE, GENERATE_COUNT_DATAFRAME, PLOT_ALL_NCRNAS, GENERATE_DEPTHFILE_STATS, ORGANISE_RESULTS_GROUPS, RESULTS_TABLE, SUM_COUNTS, GENERATE_TRNA_DEPTH_FILES, ORGANISE_RESULTS, PUBLISH_FILES, COMBINE_DEPTHFILES, TRIM_READS, PREPARE_TRNA_GTF, DISTRIBUTION_SCORE, PREDICT_TSRNA_TYPE, DATA_TRANSFORMATIONS, PREPARE_NCRNA_GTF, PREDICT_TSRNA_TYPE_GROUPS, PLOT_NCRNAS, COUNTS_TO_COLLAPSED_COUNTS, DESEQ2, VENN_DIAGRAM, COMBINED_SCORE, ADD_EMPTY_COUNTS, PLOT_NCRNA_ALL_PLOTS, GENERATE_RESULTS_PDF, SLOPE_SCORE, PLOT_TRNA_ALL_DEPTH_PLOTS, RAW_COUNTS_TO_NORM_COUNTS, PLOT_TSRNA_LENGTHS, RAW_COUNTS_TO_PROPORTIONS, STAR_ALIGN, FISHERS_METHOD, CLEAVAGE_SCORE, PLOT_TRNA_ALIGNMENT_LENGTH, GENERATE_NCRNA_DEPTH_FILES
Oct-22 16:05:22.265 [main] DEBUG nextflow.Session - Ignite dataflow network (42)
Oct-22 16:05:22.271 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PREPARE_TRNA_GTF
Oct-22 16:05:22.272 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PREPARE_NCRNA_GTF
Oct-22 16:05:22.273 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > TRIM_READS
Oct-22 16:05:22.274 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > MAKE_STAR_DB
Oct-22 16:05:22.274 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > STAR_ALIGN
Oct-22 16:05:22.275 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BAM_COLLAPSE
Oct-22 16:05:22.276 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > ADD_EMPTY_COUNTS
Oct-22 16:05:22.279 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BAM_SPLIT
Oct-22 16:05:22.280 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > FEATURE_COUNT_TRNA
Oct-22 16:05:22.283 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > FEATURE_COUNT_NCRNA
Oct-22 16:05:22.285 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > SUM_COUNTS
Oct-22 16:05:22.286 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_TRNA_DEPTH_FILES
Oct-22 16:05:22.287 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES
Oct-22 16:05:22.287 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_NCRNA_DEPTH_FILES
Oct-22 16:05:22.288 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_DEPTHFILE_STATS
Oct-22 16:05:22.289 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > RAW_COUNTS_TO_PROPORTIONS
Oct-22 16:05:22.290 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > RAW_COUNTS_TO_NORM_COUNTS
Oct-22 16:05:22.290 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > COUNTS_TO_COLLAPSED_COUNTS
Oct-22 16:05:22.291 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PREDICT_TSRNA_TYPE
Oct-22 16:05:22.291 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PLOT_TRNA_ALIGNMENT_LENGTH
Oct-22 16:05:22.292 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PLOT_TRNA_ALL_PLOTS
Oct-22 16:05:22.293 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_RESULTS_PDF
Oct-22 16:05:22.293 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > DESEQ2
Oct-22 16:05:22.293 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > DATA_TRANSFORMATIONS
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > DISTRIBUTION_SCORE
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > SLOPE_SCORE
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > CLEAVAGE_SCORE
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > FISHERS_METHOD
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > RESULTS_TABLE
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > COMBINED_SCORE
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PLOT_TSRNA_LENGTHS
Oct-22 16:05:22.294 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PLOT_TRNAS
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PLOT_NCRNAS
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > VENN_DIAGRAM
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_COUNT_DATAFRAME
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > STACKED_BARPLOTS
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BARPLOTS
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PREDICT_TSRNA_TYPE_GROUPS
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GENERATE_RESULTS_PDF_GROUPS
Oct-22 16:05:22.295 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > ORGANISE_RESULTS_GROUPS
Oct-22 16:05:22.296 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PUBLISH_FILES
Oct-22 16:05:22.296 [main] DEBUG nextflow.script.ScriptRunner - > Await termination 
Oct-22 16:05:22.296 [main] DEBUG nextflow.Session - Session await
Oct-22 16:05:22.296 [PathVisitor-1] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: data/; pattern: *.fastq.gz; options: [:]
Oct-22 16:05:22.332 [PathVisitor-2] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: data/; pattern: *.fq.gz; options: [:]
Oct-22 16:05:22.577 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.587 [Task submitter] INFO  nextflow.Session - [f1/f10cec] Submitted process > TRIM_READS (3)
Oct-22 16:05:22.601 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.602 [Task submitter] INFO  nextflow.Session - [28/4ef973] Submitted process > TRIM_READS (13)
Oct-22 16:05:22.606 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.606 [Task submitter] INFO  nextflow.Session - [bc/561b83] Submitted process > TRIM_READS (22)
Oct-22 16:05:22.611 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.612 [Task submitter] INFO  nextflow.Session - [cb/58dff3] Submitted process > TRIM_READS (4)
Oct-22 16:05:22.616 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.616 [Task submitter] INFO  nextflow.Session - [51/37f372] Submitted process > TRIM_READS (27)
Oct-22 16:05:22.622 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.622 [Task submitter] INFO  nextflow.Session - [24/dff39b] Submitted process > TRIM_READS (2)
Oct-22 16:05:22.630 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.631 [Task submitter] INFO  nextflow.Session - [2c/46469c] Submitted process > TRIM_READS (21)
Oct-22 16:05:22.637 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.637 [Task submitter] INFO  nextflow.Session - [11/23f66d] Submitted process > TRIM_READS (26)
Oct-22 16:05:22.641 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.643 [Task submitter] INFO  nextflow.Session - [da/c0debd] Submitted process > TRIM_READS (14)
Oct-22 16:05:22.647 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.647 [Task submitter] INFO  nextflow.Session - [95/10e031] Submitted process > TRIM_READS (20)
Oct-22 16:05:22.652 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.656 [Task submitter] INFO  nextflow.Session - [50/6fecca] Submitted process > TRIM_READS (16)
Oct-22 16:05:22.660 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.664 [Task submitter] INFO  nextflow.Session - [fb/352993] Submitted process > TRIM_READS (5)
Oct-22 16:05:22.669 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.672 [Task submitter] INFO  nextflow.Session - [da/2553e3] Submitted process > TRIM_READS (23)
Oct-22 16:05:22.676 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.678 [Task submitter] INFO  nextflow.Session - [2e/9b2fd7] Submitted process > TRIM_READS (1)
Oct-22 16:05:22.682 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.683 [Task submitter] INFO  nextflow.Session - [9b/3f8a9c] Submitted process > TRIM_READS (6)
Oct-22 16:05:22.688 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.689 [Task submitter] INFO  nextflow.Session - [10/7744c3] Submitted process > TRIM_READS (7)
Oct-22 16:05:22.695 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.695 [Task submitter] INFO  nextflow.Session - [3e/b99904] Submitted process > TRIM_READS (11)
Oct-22 16:05:22.699 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.700 [Task submitter] INFO  nextflow.Session - [5e/7acde2] Submitted process > TRIM_READS (9)
Oct-22 16:05:22.703 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.704 [Task submitter] INFO  nextflow.Session - [d5/ff0672] Submitted process > TRIM_READS (25)
Oct-22 16:05:22.708 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.710 [Task submitter] INFO  nextflow.Session - [ac/d3884c] Submitted process > TRIM_READS (10)
Oct-22 16:05:22.713 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.714 [Task submitter] INFO  nextflow.Session - [87/051e27] Submitted process > PREPARE_TRNA_GTF
Oct-22 16:05:22.718 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.719 [Task submitter] INFO  nextflow.Session - [8e/010d70] Submitted process > TRIM_READS (17)
Oct-22 16:05:22.726 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.727 [Task submitter] INFO  nextflow.Session - [40/1568e4] Submitted process > TRIM_READS (12)
Oct-22 16:05:22.731 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.732 [Task submitter] INFO  nextflow.Session - [9f/64fa4b] Submitted process > PREPARE_NCRNA_GTF
Oct-22 16:05:22.737 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.739 [Task submitter] INFO  nextflow.Session - [2d/648ab1] Submitted process > TRIM_READS (19)
Oct-22 16:05:22.747 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.748 [Task submitter] INFO  nextflow.Session - [61/7a09b5] Submitted process > TRIM_READS (24)
Oct-22 16:05:22.757 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.757 [Task submitter] INFO  nextflow.Session - [ff/5856f1] Submitted process > TRIM_READS (18)
Oct-22 16:05:22.762 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.763 [Task submitter] INFO  nextflow.Session - [35/214ef7] Submitted process > TRIM_READS (8)
Oct-22 16:05:22.815 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: PREPARE_TRNA_GTF; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/051e272df93f5a670e1d9cf24e9028]
Oct-22 16:05:22.818 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.818 [Task submitter] INFO  nextflow.Session - [e6/0755cf] Submitted process > TRIM_READS (28)
Oct-22 16:05:22.834 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: PREPARE_NCRNA_GTF; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/64fa4b1f851676822818fc8a8cdc13]
Oct-22 16:05:22.838 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:05:22.838 [Task submitter] INFO  nextflow.Session - [78/a4c32c] Submitted process > TRIM_READS (15)
Oct-22 16:08:48.001 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: TRIM_READS (12); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/1568e44765b98443d30f86f1863b85]
Oct-22 16:08:48.006 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:08:48.006 [Task submitter] INFO  nextflow.Session - [0b/2c91be] Submitted process > TRIM_READS (29)
Oct-22 16:10:21.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: TRIM_READS (2); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/dff39b68ecfb6e4e278fb89384f4b7]
Oct-22 16:10:21.650 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:10:21.651 [Task submitter] INFO  nextflow.Session - [c8/a70691] Submitted process > TRIM_READS (30)
Oct-22 16:10:22.051 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 28 -- submitted tasks are shown below
~> TaskHandler[id: 6; name: TRIM_READS (3); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f1/f10cec1ef75381b76e3b17f3dfa18d]
~> TaskHandler[id: 16; name: TRIM_READS (13); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/28/4ef9736afa0538362bab8381e564dd]
~> TaskHandler[id: 25; name: TRIM_READS (22); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/561b83157c5e17962dcf6001ff9e70]
~> TaskHandler[id: 7; name: TRIM_READS (4); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/58dff3bd82aa1726fec1e81b02fe46]
~> TaskHandler[id: 30; name: TRIM_READS (27); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/51/37f3721e316fcb102f7e8e2b482a27]
~> TaskHandler[id: 24; name: TRIM_READS (21); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/46469c625516aeb2e70204a9963bb5]
~> TaskHandler[id: 29; name: TRIM_READS (26); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/23f66d31988964c825b5394a86f928]
~> TaskHandler[id: 17; name: TRIM_READS (14); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/c0debde3fcf1ed209bc49fc85212ef]
~> TaskHandler[id: 23; name: TRIM_READS (20); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/95/10e031f377c9559f46be470d5e630c]
~> TaskHandler[id: 19; name: TRIM_READS (16); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/50/6fecca624033c05e8a830ae32f29b9]
.. remaining tasks omitted.
Oct-22 16:10:23.653 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 47 -- tasks to be submitted are shown below
~> TaskHandler[id: 2; name: MAKE_STAR_DB; status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/3edde5b0b7d089b6dfe948ee468bff]
~> TaskHandler[id: 34; name: TRIM_READS (31); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/d4283e3b8e170c97a20482066d2769]
~> TaskHandler[id: 35; name: TRIM_READS (32); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/9e222f8f54f7e733090fc2054fa3f5]
~> TaskHandler[id: 36; name: TRIM_READS (33); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/1fc2f89d9f039d9de2d1d78dc6cc27]
~> TaskHandler[id: 37; name: TRIM_READS (34); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/ff287da8b51633d845ec6d04d02143]
~> TaskHandler[id: 38; name: TRIM_READS (35); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/5e10ffd536427bc8129c9107cf8c2d]
~> TaskHandler[id: 39; name: TRIM_READS (36); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/e4a0c1f8080d9369e80425b158bbea]
~> TaskHandler[id: 40; name: TRIM_READS (37); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b12451f189935c272ef9406bd85d4b]
~> TaskHandler[id: 41; name: TRIM_READS (38); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/f20f14ce58ca9a87d53dd9af327fc2]
~> TaskHandler[id: 42; name: TRIM_READS (39); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/83beb2e20f17017803d04db2f36c18]
.. remaining tasks omitted.
Oct-22 16:10:26.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: TRIM_READS (4); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/58dff3bd82aa1726fec1e81b02fe46]
Oct-22 16:10:26.943 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:10:26.944 [Task submitter] INFO  nextflow.Session - [e8/d4283e] Submitted process > TRIM_READS (31)
Oct-22 16:10:27.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: TRIM_READS (1); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/9b2fd77c7138fdfaa358c5d4457afb]
Oct-22 16:10:27.646 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:10:27.647 [Task submitter] INFO  nextflow.Session - [ce/9e222f] Submitted process > TRIM_READS (32)
Oct-22 16:10:34.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 24; name: TRIM_READS (21); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/46469c625516aeb2e70204a9963bb5]
Oct-22 16:10:34.101 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:10:34.101 [Task submitter] INFO  nextflow.Session - [58/1fc2f8] Submitted process > TRIM_READS (33)
Oct-22 16:10:36.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: TRIM_READS (20); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/95/10e031f377c9559f46be470d5e630c]
Oct-22 16:10:36.972 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:10:36.972 [Task submitter] INFO  nextflow.Session - [6f/ff287d] Submitted process > TRIM_READS (34)
Oct-22 16:11:11.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: TRIM_READS (17); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/010d70f1d584baaa939bd0e9793acf]
Oct-22 16:11:11.313 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:11.313 [Task submitter] INFO  nextflow.Session - [ed/5e10ff] Submitted process > TRIM_READS (35)
Oct-22 16:11:13.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: TRIM_READS (27); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/51/37f3721e316fcb102f7e8e2b482a27]
Oct-22 16:11:13.552 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:13.553 [Task submitter] INFO  nextflow.Session - [2c/e4a0c1] Submitted process > TRIM_READS (36)
Oct-22 16:11:34.760 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: TRIM_READS (16); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/50/6fecca624033c05e8a830ae32f29b9]
Oct-22 16:11:34.764 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:34.764 [Task submitter] INFO  nextflow.Session - [cf/b12451] Submitted process > TRIM_READS (37)
Oct-22 16:11:37.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: TRIM_READS (11); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3e/b999040a4649cd85fd90fc1247f351]
Oct-22 16:11:37.871 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:37.876 [Task submitter] INFO  nextflow.Session - [44/f20f14] Submitted process > TRIM_READS (38)
Oct-22 16:11:40.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: TRIM_READS (5); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/3529930790464ca2c15eb93648e960]
Oct-22 16:11:40.854 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:40.854 [Task submitter] INFO  nextflow.Session - [15/83beb2] Submitted process > TRIM_READS (39)
Oct-22 16:11:41.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: TRIM_READS (15); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/78/a4c32c34609806944024c707ba434b]
Oct-22 16:11:41.807 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:41.808 [Task submitter] INFO  nextflow.Session - [3a/4cf51d] Submitted process > TRIM_READS (40)
Oct-22 16:11:50.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: TRIM_READS (3); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f1/f10cec1ef75381b76e3b17f3dfa18d]
Oct-22 16:11:50.345 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:11:50.345 [Task submitter] INFO  nextflow.Session - [97/ea90bf] Submitted process > TRIM_READS (41)
Oct-22 16:12:12.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: TRIM_READS (23); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/2553e30010fd6dc4744db9f622ae12]
Oct-22 16:12:12.720 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:12.729 [Task submitter] INFO  nextflow.Session - [79/32f4bc] Submitted process > TRIM_READS (42)
Oct-22 16:12:16.393 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: TRIM_READS (18); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/5856f14cfd013cc94e5478cd8b0062]
Oct-22 16:12:16.396 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:16.397 [Task submitter] INFO  nextflow.Session - [f3/a18910] Submitted process > TRIM_READS (43)
Oct-22 16:12:28.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: TRIM_READS (13); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/28/4ef9736afa0538362bab8381e564dd]
Oct-22 16:12:28.753 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:28.754 [Task submitter] INFO  nextflow.Session - [f6/f0933e] Submitted process > TRIM_READS (45)
Oct-22 16:12:29.138 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: TRIM_READS (9); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/7acde2ce453a094fc189a6dbd076ff]
Oct-22 16:12:29.143 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:29.143 [Task submitter] INFO  nextflow.Session - [81/db6a45] Submitted process > TRIM_READS (46)
Oct-22 16:12:34.673 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: TRIM_READS (14); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/c0debde3fcf1ed209bc49fc85212ef]
Oct-22 16:12:34.678 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:34.678 [Task submitter] INFO  nextflow.Session - [bb/77bfdf] Submitted process > TRIM_READS (70)
Oct-22 16:12:37.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 28; name: TRIM_READS (25); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d5/ff067299fdffc6a939abc20755654d]
Oct-22 16:12:37.855 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:37.855 [Task submitter] INFO  nextflow.Session - [8b/f87f34] Submitted process > TRIM_READS (44)
Oct-22 16:12:46.925 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: TRIM_READS (19); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2d/648ab178f9a75c1e2c87af2208b2ed]
Oct-22 16:12:46.930 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:12:46.930 [Task submitter] INFO  nextflow.Session - [e7/852ab5] Submitted process > TRIM_READS (47)
Oct-22 16:13:11.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: TRIM_READS (7); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/7744c38c9a63e88ca4fc273d353b98]
Oct-22 16:13:11.862 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:13:11.862 [Task submitter] INFO  nextflow.Session - [1c/55a9ab] Submitted process > TRIM_READS (48)
Oct-22 16:13:14.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 27; name: TRIM_READS (24); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/7a09b5e0390e790dc9576f87b9297b]
Oct-22 16:13:14.678 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:13:14.679 [Task submitter] INFO  nextflow.Session - [29/6ab61c] Submitted process > TRIM_READS (49)
Oct-22 16:13:22.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 25; name: TRIM_READS (22); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/561b83157c5e17962dcf6001ff9e70]
Oct-22 16:13:22.324 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:13:22.325 [Task submitter] INFO  nextflow.Session - [8d/fbe6b2] Submitted process > TRIM_READS (50)
Oct-22 16:13:49.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: TRIM_READS (8); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/214ef7403045688d05d39bfe1d371b]
Oct-22 16:13:49.805 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:13:49.806 [Task submitter] INFO  nextflow.Session - [0d/dddfd0] Submitted process > TRIM_READS (51)
Oct-22 16:13:50.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: TRIM_READS (41); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/97/ea90bf2be39a0b44503014661b8bc1]
Oct-22 16:13:50.641 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:13:50.641 [Task submitter] INFO  nextflow.Session - [d1/da1196] Submitted process > TRIM_READS (52)
Oct-22 16:13:58.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: TRIM_READS (10); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ac/d3884ce4fd32ff859ce6dec4b53be6]
Oct-22 16:13:58.544 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:13:58.544 [Task submitter] INFO  nextflow.Session - [79/b46cac] Submitted process > TRIM_READS (53)
Oct-22 16:14:04.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: TRIM_READS (6); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/3f8a9ceb6a32f8870a3205bd6ab09e]
Oct-22 16:14:04.937 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:14:04.938 [Task submitter] INFO  nextflow.Session - [cf/bfa084] Submitted process > TRIM_READS (54)
Oct-22 16:14:13.393 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: TRIM_READS (26); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/23f66d31988964c825b5394a86f928]
Oct-22 16:14:13.397 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:14:13.398 [Task submitter] INFO  nextflow.Session - [73/d72dc1] Submitted process > TRIM_READS (55)
Oct-22 16:15:22.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 28 -- submitted tasks are shown below
~> TaskHandler[id: 31; name: TRIM_READS (28); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/0755cfc28f7763740e1e96f8c9833b]
~> TaskHandler[id: 32; name: TRIM_READS (29); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0b/2c91be85102bd8c9f95711efbfc511]
~> TaskHandler[id: 33; name: TRIM_READS (30); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/a706912dd9123b9fe29b39cd1a6858]
~> TaskHandler[id: 34; name: TRIM_READS (31); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/d4283e3b8e170c97a20482066d2769]
~> TaskHandler[id: 35; name: TRIM_READS (32); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/9e222f8f54f7e733090fc2054fa3f5]
~> TaskHandler[id: 36; name: TRIM_READS (33); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/1fc2f89d9f039d9de2d1d78dc6cc27]
~> TaskHandler[id: 37; name: TRIM_READS (34); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/ff287da8b51633d845ec6d04d02143]
~> TaskHandler[id: 38; name: TRIM_READS (35); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/5e10ffd536427bc8129c9107cf8c2d]
~> TaskHandler[id: 39; name: TRIM_READS (36); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/e4a0c1f8080d9369e80425b158bbea]
~> TaskHandler[id: 40; name: TRIM_READS (37); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b12451f189935c272ef9406bd85d4b]
.. remaining tasks omitted.
Oct-22 16:15:24.446 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 21 -- tasks to be submitted are shown below
~> TaskHandler[id: 2; name: MAKE_STAR_DB; status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/3edde5b0b7d089b6dfe948ee468bff]
~> TaskHandler[id: 59; name: TRIM_READS (56); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/1989d36f17d8a79f028eb9185bd962]
~> TaskHandler[id: 61; name: TRIM_READS (58); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/0448046844bcea88e69bee834dcf1a]
~> TaskHandler[id: 60; name: TRIM_READS (57); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/202ace1caf4f9fbf79dd6e3c068731]
~> TaskHandler[id: 62; name: TRIM_READS (59); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/0f2811b9c33cb7063e1ec335cc3c91]
~> TaskHandler[id: 63; name: TRIM_READS (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/46bc7b42d4cb5192a9d03752c3c824]
~> TaskHandler[id: 64; name: TRIM_READS (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b0/6e64928979a3a2555b44cfa6ff5205]
~> TaskHandler[id: 65; name: TRIM_READS (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/cf806a2ebd97b2d7ecfbfdf5d1b27c]
~> TaskHandler[id: 66; name: TRIM_READS (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/00a51f9ef833c3a2b3bd0a3d93b7e4]
~> TaskHandler[id: 67; name: TRIM_READS (64); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/2629e4a2e4def11236c3b767fa1788]
.. remaining tasks omitted.
Oct-22 16:16:02.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: TRIM_READS (29); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0b/2c91be85102bd8c9f95711efbfc511]
Oct-22 16:16:02.195 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:02.195 [Task submitter] INFO  nextflow.Session - [10/1989d3] Submitted process > TRIM_READS (56)
Oct-22 16:16:09.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 45; name: TRIM_READS (42); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/32f4bcc26170f0fc8f7ba7998dbd90]
Oct-22 16:16:09.329 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:09.330 [Task submitter] INFO  nextflow.Session - [40/044804] Submitted process > TRIM_READS (58)
Oct-22 16:16:22.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: TRIM_READS (30); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/a706912dd9123b9fe29b39cd1a6858]
Oct-22 16:16:22.408 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:22.408 [Task submitter] INFO  nextflow.Session - [b4/202ace] Submitted process > TRIM_READS (57)
Oct-22 16:16:30.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 38; name: TRIM_READS (35); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/5e10ffd536427bc8129c9107cf8c2d]
Oct-22 16:16:30.084 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:30.084 [Task submitter] INFO  nextflow.Session - [f7/0f2811] Submitted process > TRIM_READS (59)
Oct-22 16:16:35.169 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 53; name: TRIM_READS (50); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/fbe6b2cafdf51d1d3e6d92b0b4ab00]
Oct-22 16:16:35.172 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:35.172 [Task submitter] INFO  nextflow.Session - [1a/46bc7b] Submitted process > TRIM_READS (60)
Oct-22 16:16:42.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 52; name: TRIM_READS (49); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/29/6ab61c2b40a39482553a48c9a6d01a]
Oct-22 16:16:42.484 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:42.485 [Task submitter] INFO  nextflow.Session - [b0/6e6492] Submitted process > TRIM_READS (61)
Oct-22 16:16:44.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: TRIM_READS (36); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/e4a0c1f8080d9369e80425b158bbea]
Oct-22 16:16:44.971 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:16:44.972 [Task submitter] INFO  nextflow.Session - [55/cf806a] Submitted process > TRIM_READS (62)
Oct-22 16:17:13.945 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 35; name: TRIM_READS (32); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/9e222f8f54f7e733090fc2054fa3f5]
Oct-22 16:17:13.949 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:17:13.950 [Task submitter] INFO  nextflow.Session - [1d/00a51f] Submitted process > TRIM_READS (63)
Oct-22 16:17:39.515 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: TRIM_READS (31); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/d4283e3b8e170c97a20482066d2769]
Oct-22 16:17:39.524 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:17:39.525 [Task submitter] INFO  nextflow.Session - [41/2629e4] Submitted process > TRIM_READS (64)
Oct-22 16:17:41.664 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 43; name: TRIM_READS (40); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/4cf51d29a40949ead4524ea38d77ca]
Oct-22 16:17:41.667 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:17:41.676 [Task submitter] INFO  nextflow.Session - [46/ef69ea] Submitted process > TRIM_READS (65)
Oct-22 16:17:44.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: TRIM_READS (33); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/1fc2f89d9f039d9de2d1d78dc6cc27]
Oct-22 16:17:44.337 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:17:44.337 [Task submitter] INFO  nextflow.Session - [c0/f282d9] Submitted process > TRIM_READS (67)
Oct-22 16:17:52.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 40; name: TRIM_READS (37); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b12451f189935c272ef9406bd85d4b]
Oct-22 16:17:52.209 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:17:52.209 [Task submitter] INFO  nextflow.Session - [3a/187b73] Submitted process > TRIM_READS (66)
Oct-22 16:17:57.412 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: TRIM_READS (28); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/0755cfc28f7763740e1e96f8c9833b]
Oct-22 16:17:57.416 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:17:57.416 [Task submitter] INFO  nextflow.Session - [e4/fb99b2] Submitted process > TRIM_READS (68)
Oct-22 16:18:12.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 37; name: TRIM_READS (34); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/ff287da8b51633d845ec6d04d02143]
Oct-22 16:18:12.171 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:18:12.172 [Task submitter] INFO  nextflow.Session - [84/a83120] Submitted process > TRIM_READS (69)
Oct-22 16:18:39.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 73; name: TRIM_READS (70); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/77bfdf5867e78e85ee8f6ad18fc90b]
Oct-22 16:18:39.482 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:18:39.483 [Task submitter] INFO  nextflow.Session - [38/402a91] Submitted process > TRIM_READS (71)
Oct-22 16:19:12.677 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 59; name: TRIM_READS (56); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/1989d36f17d8a79f028eb9185bd962]
Oct-22 16:19:12.683 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:19:12.683 [Task submitter] INFO  nextflow.Session - [d4/68e8ce] Submitted process > TRIM_READS (72)
Oct-22 16:19:19.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 58; name: TRIM_READS (55); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/d72dc1d73d8f70a61c3cbb4a783b5d]
Oct-22 16:19:19.021 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:19:19.021 [Task submitter] INFO  nextflow.Session - [11/e03a40] Submitted process > TRIM_READS (73)
Oct-22 16:19:20.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 57; name: TRIM_READS (54); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/bfa084d73a8402f846241f870b7985]
Oct-22 16:19:20.666 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:19:20.667 [Task submitter] INFO  nextflow.Session - [9b/b3802c] Submitted process > TRIM_READS (75)
Oct-22 16:19:34.299 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 55; name: TRIM_READS (52); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d1/da1196f40713abe16f88ca0e43ed04]
Oct-22 16:19:34.306 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:19:34.306 [Task submitter] INFO  nextflow.Session - [17/86b6ce] Submitted process > TRIM_READS (74)
Oct-22 16:19:35.148 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 49; name: TRIM_READS (46); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/81/db6a45022093b1fc565b52f3ab6ea6]
Oct-22 16:19:35.152 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:19:35.152 [Task submitter] INFO  nextflow.Session - [06/b4d4d0] Submitted process > TRIM_READS (76)
Oct-22 16:19:35.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 48; name: TRIM_READS (45); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f6/f0933eff685f4c0edec40caaa0a85b]
Oct-22 16:19:36.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: TRIM_READS (38); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/f20f14ce58ca9a87d53dd9af327fc2]
Oct-22 16:20:21.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 50; name: TRIM_READS (47); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/852ab5b79ddcfbfd6d00f8ea467318]
Oct-22 16:20:22.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 25 -- submitted tasks are shown below
~> TaskHandler[id: 42; name: TRIM_READS (39); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/83beb2e20f17017803d04db2f36c18]
~> TaskHandler[id: 46; name: TRIM_READS (43); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f3/a189108780a5b0c5ccfc4b0bc56f04]
~> TaskHandler[id: 47; name: TRIM_READS (44); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/f87f34fa96ebb4dacbd4379c7c224e]
~> TaskHandler[id: 51; name: TRIM_READS (48); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1c/55a9ab6706eda6296081601989e9c5]
~> TaskHandler[id: 54; name: TRIM_READS (51); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/dddfd096f6cfa81bc3368414ec6a43]
~> TaskHandler[id: 56; name: TRIM_READS (53); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/b46cac26adeb3b27fe1cc98305ee85]
~> TaskHandler[id: 61; name: TRIM_READS (58); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/0448046844bcea88e69bee834dcf1a]
~> TaskHandler[id: 60; name: TRIM_READS (57); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/202ace1caf4f9fbf79dd6e3c068731]
~> TaskHandler[id: 62; name: TRIM_READS (59); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/0f2811b9c33cb7063e1ec335cc3c91]
~> TaskHandler[id: 63; name: TRIM_READS (60); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/46bc7b42d4cb5192a9d03752c3c824]
.. remaining tasks omitted.
Oct-22 16:20:23.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 61; name: TRIM_READS (58); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/0448046844bcea88e69bee834dcf1a]
Oct-22 16:20:24.633 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below
~> TaskHandler[id: 2; name: MAKE_STAR_DB; status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/3edde5b0b7d089b6dfe948ee468bff]
Oct-22 16:20:44.149 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 47; name: TRIM_READS (44); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/f87f34fa96ebb4dacbd4379c7c224e]
Oct-22 16:20:52.528 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 56; name: TRIM_READS (53); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/b46cac26adeb3b27fe1cc98305ee85]
Oct-22 16:20:55.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 51; name: TRIM_READS (48); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1c/55a9ab6706eda6296081601989e9c5]
Oct-22 16:20:57.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 46; name: TRIM_READS (43); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f3/a189108780a5b0c5ccfc4b0bc56f04]
Oct-22 16:21:23.843 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 42; name: TRIM_READS (39); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/83beb2e20f17017803d04db2f36c18]
Oct-22 16:21:47.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 63; name: TRIM_READS (60); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/46bc7b42d4cb5192a9d03752c3c824]
Oct-22 16:22:18.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 54; name: TRIM_READS (51); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/dddfd096f6cfa81bc3368414ec6a43]
Oct-22 16:22:29.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 64; name: TRIM_READS (61); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b0/6e64928979a3a2555b44cfa6ff5205]
Oct-22 16:22:34.230 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 66; name: TRIM_READS (63); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/00a51f9ef833c3a2b3bd0a3d93b7e4]
Oct-22 16:22:55.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 68; name: TRIM_READS (65); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/46/ef69eafb87c4b1c3d6c6c280d7db51]
Oct-22 16:23:00.709 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 72; name: TRIM_READS (69); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a83120b13965a1a0b077f22bebd223]
Oct-22 16:23:06.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 62; name: TRIM_READS (59); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/0f2811b9c33cb7063e1ec335cc3c91]
Oct-22 16:23:06.770 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:23:06.770 [Task submitter] INFO  nextflow.Session - [68/3edde5] Submitted process > MAKE_STAR_DB
Oct-22 16:23:36.266 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 79; name: TRIM_READS (76); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/06/b4d4d04ffeb9284a10f3046bc81518]
Oct-22 16:24:00.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 70; name: TRIM_READS (67); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c0/f282d905a7e8ebe9027b60efc40258]
Oct-22 16:24:17.088 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 74; name: TRIM_READS (71); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/402a91394981faaab4fe667770c76e]
Oct-22 16:24:24.550 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 71; name: TRIM_READS (68); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/fb99b2657e49f79f287c9d1048b925]
Oct-22 16:24:31.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 67; name: TRIM_READS (64); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/2629e4a2e4def11236c3b767fa1788]
Oct-22 16:24:35.909 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 60; name: TRIM_READS (57); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/202ace1caf4f9fbf79dd6e3c068731]
Oct-22 16:24:36.114 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 65; name: TRIM_READS (62); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/cf806a2ebd97b2d7ecfbfdf5d1b27c]
Oct-22 16:24:45.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 77; name: TRIM_READS (74); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/86b6ce086fc83cd9854cc863611350]
Oct-22 16:24:49.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 78; name: TRIM_READS (75); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/b3802c42be514c7e45813e18c3be59]
Oct-22 16:24:56.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 75; name: TRIM_READS (72); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/68e8ce46bd27f8d51a101c16ce0adc]
Oct-22 16:25:20.997 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 69; name: TRIM_READS (66); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/187b738e2b2ff9407ac4ffa06e02d8]
Oct-22 16:25:22.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 76; name: TRIM_READS (73); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/e03a4004a7ba9a7726cd79f42d28fe]
~> TaskHandler[id: 2; name: MAKE_STAR_DB; status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/3edde5b0b7d089b6dfe948ee468bff]
Oct-22 16:25:22.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: MAKE_STAR_DB; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/3edde5b0b7d089b6dfe948ee468bff]
Oct-22 16:25:22.834 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:25:22.835 [Task submitter] INFO  nextflow.Session - [c6/b8d632] Submitted process > STAR_ALIGN (14)
Oct-22 16:25:24.848 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 74 -- tasks to be submitted are shown below
~> TaskHandler[id: 103; name: STAR_ALIGN (24); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/fcaf2dce532b215b7a0d96677fa53f]
~> TaskHandler[id: 91; name: STAR_ALIGN (12); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/11eb8a6a846477ddedc58f8d89cd9a]
~> TaskHandler[id: 90; name: STAR_ALIGN (11); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/b9ef969746dcd40f41e794f40c323c]
~> TaskHandler[id: 96; name: STAR_ALIGN (17); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/0b6409fc95abac2c30a777188e411f]
~> TaskHandler[id: 92; name: STAR_ALIGN (13); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/a62dedb081ad12283fa3241dd3b836]
~> TaskHandler[id: 81; name: STAR_ALIGN (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/8bf74855e89aba139093f8d7507b7a]
~> TaskHandler[id: 94; name: STAR_ALIGN (15); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/cc22504c2578f8cde1667089fc9f9c]
~> TaskHandler[id: 82; name: STAR_ALIGN (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/ac158099bd04905b7e6aea82d00f7f]
~> TaskHandler[id: 99; name: STAR_ALIGN (20); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/a25b65c1598f9a38d405b90e16b609]
~> TaskHandler[id: 95; name: STAR_ALIGN (16); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/28811638ffeee0ef3c4190ebf37b6c]
.. remaining tasks omitted.
Oct-22 16:25:34.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 76; name: TRIM_READS (73); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/e03a4004a7ba9a7726cd79f42d28fe]
Oct-22 16:27:38.946 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 93; name: STAR_ALIGN (14); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/b8d632b14babd71c09fa1efae07349]
Oct-22 16:27:38.950 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:27:38.950 [Task submitter] INFO  nextflow.Session - [e7/fcaf2d] Submitted process > STAR_ALIGN (24)
Oct-22 16:30:16.283 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 103; name: STAR_ALIGN (24); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/fcaf2dce532b215b7a0d96677fa53f]
Oct-22 16:30:16.286 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:30:16.287 [Task submitter] INFO  nextflow.Session - [c6/11eb8a] Submitted process > STAR_ALIGN (12)
Oct-22 16:30:22.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 91; name: STAR_ALIGN (12); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/11eb8a6a846477ddedc58f8d89cd9a]
Oct-22 16:30:25.293 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 90; name: STAR_ALIGN (11); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/b9ef969746dcd40f41e794f40c323c]
~> TaskHandler[id: 96; name: STAR_ALIGN (17); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/0b6409fc95abac2c30a777188e411f]
~> TaskHandler[id: 92; name: STAR_ALIGN (13); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/a62dedb081ad12283fa3241dd3b836]
~> TaskHandler[id: 81; name: STAR_ALIGN (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/8bf74855e89aba139093f8d7507b7a]
~> TaskHandler[id: 94; name: STAR_ALIGN (15); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/cc22504c2578f8cde1667089fc9f9c]
~> TaskHandler[id: 82; name: STAR_ALIGN (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/ac158099bd04905b7e6aea82d00f7f]
~> TaskHandler[id: 99; name: STAR_ALIGN (20); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/a25b65c1598f9a38d405b90e16b609]
~> TaskHandler[id: 95; name: STAR_ALIGN (16); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/28811638ffeee0ef3c4190ebf37b6c]
~> TaskHandler[id: 87; name: STAR_ALIGN (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/ead295563ee69d9fd38f8c3c5e6075]
~> TaskHandler[id: 100; name: STAR_ALIGN (21); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3a38b676cafda03d0f06d9d932507c]
.. remaining tasks omitted.
Oct-22 16:32:24.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 91; name: STAR_ALIGN (12); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/11eb8a6a846477ddedc58f8d89cd9a]
Oct-22 16:32:24.384 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:32:24.384 [Task submitter] INFO  nextflow.Session - [d4/b9ef96] Submitted process > STAR_ALIGN (11)
Oct-22 16:34:09.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 90; name: STAR_ALIGN (11); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/b9ef969746dcd40f41e794f40c323c]
Oct-22 16:34:09.936 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:34:09.936 [Task submitter] INFO  nextflow.Session - [87/0b6409] Submitted process > STAR_ALIGN (17)
Oct-22 16:35:22.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 96; name: STAR_ALIGN (17); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/0b6409fc95abac2c30a777188e411f]
Oct-22 16:35:25.970 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 92; name: STAR_ALIGN (13); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/a62dedb081ad12283fa3241dd3b836]
~> TaskHandler[id: 81; name: STAR_ALIGN (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/8bf74855e89aba139093f8d7507b7a]
~> TaskHandler[id: 94; name: STAR_ALIGN (15); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/cc22504c2578f8cde1667089fc9f9c]
~> TaskHandler[id: 82; name: STAR_ALIGN (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/ac158099bd04905b7e6aea82d00f7f]
~> TaskHandler[id: 99; name: STAR_ALIGN (20); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/a25b65c1598f9a38d405b90e16b609]
~> TaskHandler[id: 95; name: STAR_ALIGN (16); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/28811638ffeee0ef3c4190ebf37b6c]
~> TaskHandler[id: 87; name: STAR_ALIGN (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/ead295563ee69d9fd38f8c3c5e6075]
~> TaskHandler[id: 100; name: STAR_ALIGN (21); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3a38b676cafda03d0f06d9d932507c]
~> TaskHandler[id: 80; name: STAR_ALIGN (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/634618e1e4d0e50593f14dd9f74b4b]
~> TaskHandler[id: 98; name: STAR_ALIGN (19); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/550bfbd935bb3e5792f484c3c07e0e]
.. remaining tasks omitted.
Oct-22 16:36:15.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 96; name: STAR_ALIGN (17); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/0b6409fc95abac2c30a777188e411f]
Oct-22 16:36:15.971 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:36:15.971 [Task submitter] INFO  nextflow.Session - [9f/a62ded] Submitted process > STAR_ALIGN (13)
Oct-22 16:38:20.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 92; name: STAR_ALIGN (13); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/a62dedb081ad12283fa3241dd3b836]
Oct-22 16:38:20.509 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:38:20.510 [Task submitter] INFO  nextflow.Session - [24/8bf748] Submitted process > STAR_ALIGN (2)
Oct-22 16:40:03.509 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 81; name: STAR_ALIGN (2); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/8bf74855e89aba139093f8d7507b7a]
Oct-22 16:40:03.513 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:40:03.514 [Task submitter] INFO  nextflow.Session - [1d/cc2250] Submitted process > STAR_ALIGN (15)
Oct-22 16:40:22.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 94; name: STAR_ALIGN (15); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/cc22504c2578f8cde1667089fc9f9c]
Oct-22 16:40:26.526 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 82; name: STAR_ALIGN (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/ac158099bd04905b7e6aea82d00f7f]
~> TaskHandler[id: 99; name: STAR_ALIGN (20); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/a25b65c1598f9a38d405b90e16b609]
~> TaskHandler[id: 95; name: STAR_ALIGN (16); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/28811638ffeee0ef3c4190ebf37b6c]
~> TaskHandler[id: 87; name: STAR_ALIGN (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/ead295563ee69d9fd38f8c3c5e6075]
~> TaskHandler[id: 100; name: STAR_ALIGN (21); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3a38b676cafda03d0f06d9d932507c]
~> TaskHandler[id: 80; name: STAR_ALIGN (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/634618e1e4d0e50593f14dd9f74b4b]
~> TaskHandler[id: 98; name: STAR_ALIGN (19); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/550bfbd935bb3e5792f484c3c07e0e]
~> TaskHandler[id: 101; name: STAR_ALIGN (22); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/1ea0e989dfea3b5b989bd7a5cc3139]
~> TaskHandler[id: 88; name: STAR_ALIGN (9); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/13/1c27b1d4720f840b32d34da169bae6]
~> TaskHandler[id: 89; name: STAR_ALIGN (10); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/cf8523ca91b4556c1a0903913f9ae6]
.. remaining tasks omitted.
Oct-22 16:42:17.738 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 94; name: STAR_ALIGN (15); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/cc22504c2578f8cde1667089fc9f9c]
Oct-22 16:42:17.742 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:42:17.743 [Task submitter] INFO  nextflow.Session - [e7/ac1580] Submitted process > STAR_ALIGN (3)
Oct-22 16:44:05.489 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 82; name: STAR_ALIGN (3); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/ac158099bd04905b7e6aea82d00f7f]
Oct-22 16:44:05.494 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:44:05.495 [Task submitter] INFO  nextflow.Session - [0d/a25b65] Submitted process > STAR_ALIGN (20)
Oct-22 16:45:22.384 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 99; name: STAR_ALIGN (20); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/a25b65c1598f9a38d405b90e16b609]
Oct-22 16:45:26.534 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 95; name: STAR_ALIGN (16); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/28811638ffeee0ef3c4190ebf37b6c]
~> TaskHandler[id: 87; name: STAR_ALIGN (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/ead295563ee69d9fd38f8c3c5e6075]
~> TaskHandler[id: 100; name: STAR_ALIGN (21); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3a38b676cafda03d0f06d9d932507c]
~> TaskHandler[id: 80; name: STAR_ALIGN (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/634618e1e4d0e50593f14dd9f74b4b]
~> TaskHandler[id: 98; name: STAR_ALIGN (19); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/550bfbd935bb3e5792f484c3c07e0e]
~> TaskHandler[id: 101; name: STAR_ALIGN (22); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/1ea0e989dfea3b5b989bd7a5cc3139]
~> TaskHandler[id: 88; name: STAR_ALIGN (9); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/13/1c27b1d4720f840b32d34da169bae6]
~> TaskHandler[id: 89; name: STAR_ALIGN (10); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/cf8523ca91b4556c1a0903913f9ae6]
~> TaskHandler[id: 105; name: STAR_ALIGN (26); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/f3c2c1c9350f04fb59c9af86851eaa]
~> TaskHandler[id: 102; name: STAR_ALIGN (23); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/53a39214481b26b353e6a8b3cafcc7]
.. remaining tasks omitted.
Oct-22 16:46:16.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 99; name: STAR_ALIGN (20); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/a25b65c1598f9a38d405b90e16b609]
Oct-22 16:46:16.459 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:46:16.459 [Task submitter] INFO  nextflow.Session - [bb/288116] Submitted process > STAR_ALIGN (16)
Oct-22 16:48:20.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 95; name: STAR_ALIGN (16); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/28811638ffeee0ef3c4190ebf37b6c]
Oct-22 16:48:20.682 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:48:20.682 [Task submitter] INFO  nextflow.Session - [83/ead295] Submitted process > STAR_ALIGN (8)
Oct-22 16:50:02.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 87; name: STAR_ALIGN (8); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/ead295563ee69d9fd38f8c3c5e6075]
Oct-22 16:50:02.309 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:50:02.309 [Task submitter] INFO  nextflow.Session - [83/3a38b6] Submitted process > STAR_ALIGN (21)
Oct-22 16:50:22.433 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 100; name: STAR_ALIGN (21); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3a38b676cafda03d0f06d9d932507c]
Oct-22 16:50:27.323 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 80; name: STAR_ALIGN (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/634618e1e4d0e50593f14dd9f74b4b]
~> TaskHandler[id: 98; name: STAR_ALIGN (19); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/550bfbd935bb3e5792f484c3c07e0e]
~> TaskHandler[id: 101; name: STAR_ALIGN (22); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/1ea0e989dfea3b5b989bd7a5cc3139]
~> TaskHandler[id: 88; name: STAR_ALIGN (9); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/13/1c27b1d4720f840b32d34da169bae6]
~> TaskHandler[id: 89; name: STAR_ALIGN (10); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/cf8523ca91b4556c1a0903913f9ae6]
~> TaskHandler[id: 105; name: STAR_ALIGN (26); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/f3c2c1c9350f04fb59c9af86851eaa]
~> TaskHandler[id: 102; name: STAR_ALIGN (23); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/53a39214481b26b353e6a8b3cafcc7]
~> TaskHandler[id: 104; name: STAR_ALIGN (25); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/edd8f25cfa397fa2cfbfcfeba42173]
~> TaskHandler[id: 112; name: STAR_ALIGN (33); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/61d2e29852f9c9e73a3d7ff24c1058]
~> TaskHandler[id: 83; name: STAR_ALIGN (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/8cd7c0ca54eccf8b48549f3dc44d39]
.. remaining tasks omitted.
Oct-22 16:52:33.179 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 100; name: STAR_ALIGN (21); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3a38b676cafda03d0f06d9d932507c]
Oct-22 16:52:33.181 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:52:33.181 [Task submitter] INFO  nextflow.Session - [1e/634618] Submitted process > STAR_ALIGN (1)
Oct-22 16:53:54.450 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 80; name: STAR_ALIGN (1); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/634618e1e4d0e50593f14dd9f74b4b]
Oct-22 16:53:54.454 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:53:54.454 [Task submitter] INFO  nextflow.Session - [f2/550bfb] Submitted process > STAR_ALIGN (19)
Oct-22 16:55:22.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 98; name: STAR_ALIGN (19); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/550bfbd935bb3e5792f484c3c07e0e]
Oct-22 16:55:27.494 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 101; name: STAR_ALIGN (22); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/1ea0e989dfea3b5b989bd7a5cc3139]
~> TaskHandler[id: 88; name: STAR_ALIGN (9); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/13/1c27b1d4720f840b32d34da169bae6]
~> TaskHandler[id: 89; name: STAR_ALIGN (10); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/cf8523ca91b4556c1a0903913f9ae6]
~> TaskHandler[id: 105; name: STAR_ALIGN (26); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/f3c2c1c9350f04fb59c9af86851eaa]
~> TaskHandler[id: 102; name: STAR_ALIGN (23); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/53a39214481b26b353e6a8b3cafcc7]
~> TaskHandler[id: 104; name: STAR_ALIGN (25); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/edd8f25cfa397fa2cfbfcfeba42173]
~> TaskHandler[id: 112; name: STAR_ALIGN (33); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/61d2e29852f9c9e73a3d7ff24c1058]
~> TaskHandler[id: 83; name: STAR_ALIGN (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/8cd7c0ca54eccf8b48549f3dc44d39]
~> TaskHandler[id: 84; name: STAR_ALIGN (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/d8e830b50f925a6dcb3e2ef5ab5476]
~> TaskHandler[id: 86; name: STAR_ALIGN (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/0387e7ad532c7e4bf92a90d070aa95]
.. remaining tasks omitted.
Oct-22 16:56:08.061 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 98; name: STAR_ALIGN (19); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/550bfbd935bb3e5792f484c3c07e0e]
Oct-22 16:56:08.064 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:56:08.065 [Task submitter] INFO  nextflow.Session - [d0/1ea0e9] Submitted process > STAR_ALIGN (22)
Oct-22 16:58:39.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 101; name: STAR_ALIGN (22); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/1ea0e989dfea3b5b989bd7a5cc3139]
Oct-22 16:58:39.782 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 16:58:39.782 [Task submitter] INFO  nextflow.Session - [13/1c27b1] Submitted process > STAR_ALIGN (9)
Oct-22 17:00:22.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 88; name: STAR_ALIGN (9); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/13/1c27b1d4720f840b32d34da169bae6]
Oct-22 17:00:27.830 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 89; name: STAR_ALIGN (10); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/cf8523ca91b4556c1a0903913f9ae6]
~> TaskHandler[id: 105; name: STAR_ALIGN (26); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/f3c2c1c9350f04fb59c9af86851eaa]
~> TaskHandler[id: 102; name: STAR_ALIGN (23); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/53a39214481b26b353e6a8b3cafcc7]
~> TaskHandler[id: 104; name: STAR_ALIGN (25); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/edd8f25cfa397fa2cfbfcfeba42173]
~> TaskHandler[id: 112; name: STAR_ALIGN (33); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/61d2e29852f9c9e73a3d7ff24c1058]
~> TaskHandler[id: 83; name: STAR_ALIGN (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/8cd7c0ca54eccf8b48549f3dc44d39]
~> TaskHandler[id: 84; name: STAR_ALIGN (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/d8e830b50f925a6dcb3e2ef5ab5476]
~> TaskHandler[id: 86; name: STAR_ALIGN (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/0387e7ad532c7e4bf92a90d070aa95]
~> TaskHandler[id: 116; name: STAR_ALIGN (37); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/c4f8e931be51dcf651e61782462089]
~> TaskHandler[id: 85; name: STAR_ALIGN (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/5a01586add0364780cc7f75842a6d4]
.. remaining tasks omitted.
Oct-22 17:00:43.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 88; name: STAR_ALIGN (9); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/13/1c27b1d4720f840b32d34da169bae6]
Oct-22 17:00:43.297 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:00:43.298 [Task submitter] INFO  nextflow.Session - [26/cf8523] Submitted process > STAR_ALIGN (10)
Oct-22 17:02:51.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 89; name: STAR_ALIGN (10); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/cf8523ca91b4556c1a0903913f9ae6]
Oct-22 17:02:51.374 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:02:51.375 [Task submitter] INFO  nextflow.Session - [ca/f3c2c1] Submitted process > STAR_ALIGN (26)
Oct-22 17:05:22.548 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 105; name: STAR_ALIGN (26); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/f3c2c1c9350f04fb59c9af86851eaa]
Oct-22 17:05:28.445 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 102; name: STAR_ALIGN (23); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/53a39214481b26b353e6a8b3cafcc7]
~> TaskHandler[id: 104; name: STAR_ALIGN (25); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/edd8f25cfa397fa2cfbfcfeba42173]
~> TaskHandler[id: 112; name: STAR_ALIGN (33); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/61d2e29852f9c9e73a3d7ff24c1058]
~> TaskHandler[id: 83; name: STAR_ALIGN (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/8cd7c0ca54eccf8b48549f3dc44d39]
~> TaskHandler[id: 84; name: STAR_ALIGN (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/d8e830b50f925a6dcb3e2ef5ab5476]
~> TaskHandler[id: 86; name: STAR_ALIGN (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/0387e7ad532c7e4bf92a90d070aa95]
~> TaskHandler[id: 116; name: STAR_ALIGN (37); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/c4f8e931be51dcf651e61782462089]
~> TaskHandler[id: 85; name: STAR_ALIGN (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/5a01586add0364780cc7f75842a6d4]
~> TaskHandler[id: 107; name: STAR_ALIGN (28); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/9c3909097321f4b9d729d23fae2b08]
~> TaskHandler[id: 97; name: STAR_ALIGN (18); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/2033071f67bae3b4e41b3e9814fd1b]
.. remaining tasks omitted.
Oct-22 17:05:29.388 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 105; name: STAR_ALIGN (26); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/f3c2c1c9350f04fb59c9af86851eaa]
Oct-22 17:05:29.392 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:05:29.393 [Task submitter] INFO  nextflow.Session - [e2/53a392] Submitted process > STAR_ALIGN (23)
Oct-22 17:07:54.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 102; name: STAR_ALIGN (23); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/53a39214481b26b353e6a8b3cafcc7]
Oct-22 17:07:54.345 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:07:54.346 [Task submitter] INFO  nextflow.Session - [6a/edd8f2] Submitted process > STAR_ALIGN (25)
Oct-22 17:08:46.084 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 104; name: STAR_ALIGN (25); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/edd8f25cfa397fa2cfbfcfeba42173]
Oct-22 17:08:46.088 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:08:46.089 [Task submitter] INFO  nextflow.Session - [b4/61d2e2] Submitted process > STAR_ALIGN (33)
Oct-22 17:09:58.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 112; name: STAR_ALIGN (33); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/61d2e29852f9c9e73a3d7ff24c1058]
Oct-22 17:09:58.971 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:09:58.971 [Task submitter] INFO  nextflow.Session - [e0/8cd7c0] Submitted process > STAR_ALIGN (4)
Oct-22 17:10:22.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 83; name: STAR_ALIGN (4); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/8cd7c0ca54eccf8b48549f3dc44d39]
Oct-22 17:10:28.986 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 84; name: STAR_ALIGN (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/d8e830b50f925a6dcb3e2ef5ab5476]
~> TaskHandler[id: 86; name: STAR_ALIGN (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/0387e7ad532c7e4bf92a90d070aa95]
~> TaskHandler[id: 116; name: STAR_ALIGN (37); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/c4f8e931be51dcf651e61782462089]
~> TaskHandler[id: 85; name: STAR_ALIGN (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/5a01586add0364780cc7f75842a6d4]
~> TaskHandler[id: 107; name: STAR_ALIGN (28); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/9c3909097321f4b9d729d23fae2b08]
~> TaskHandler[id: 97; name: STAR_ALIGN (18); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/2033071f67bae3b4e41b3e9814fd1b]
~> TaskHandler[id: 106; name: STAR_ALIGN (27); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/0ee019e19a8ab1a61731648021d713]
~> TaskHandler[id: 109; name: STAR_ALIGN (30); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/c0b51051ac9422e90e2f436c34b729]
~> TaskHandler[id: 108; name: STAR_ALIGN (29); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/60f4be2eb9eb7d75f88eefdaef53d2]
~> TaskHandler[id: 113; name: STAR_ALIGN (34); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/a01974a4fb05760e0bbbc197a85220]
.. remaining tasks omitted.
Oct-22 17:11:33.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 83; name: STAR_ALIGN (4); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/8cd7c0ca54eccf8b48549f3dc44d39]
Oct-22 17:11:33.375 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:11:33.375 [Task submitter] INFO  nextflow.Session - [d3/d8e830] Submitted process > STAR_ALIGN (5)
Oct-22 17:13:19.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 84; name: STAR_ALIGN (5); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/d8e830b50f925a6dcb3e2ef5ab5476]
Oct-22 17:13:19.977 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:13:19.977 [Task submitter] INFO  nextflow.Session - [fd/0387e7] Submitted process > STAR_ALIGN (7)
Oct-22 17:15:10.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 86; name: STAR_ALIGN (7); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/0387e7ad532c7e4bf92a90d070aa95]
Oct-22 17:15:10.313 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:15:10.313 [Task submitter] INFO  nextflow.Session - [61/c4f8e9] Submitted process > STAR_ALIGN (37)
Oct-22 17:15:22.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 116; name: STAR_ALIGN (37); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/c4f8e931be51dcf651e61782462089]
Oct-22 17:15:29.324 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 85; name: STAR_ALIGN (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/5a01586add0364780cc7f75842a6d4]
~> TaskHandler[id: 107; name: STAR_ALIGN (28); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/9c3909097321f4b9d729d23fae2b08]
~> TaskHandler[id: 97; name: STAR_ALIGN (18); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/2033071f67bae3b4e41b3e9814fd1b]
~> TaskHandler[id: 106; name: STAR_ALIGN (27); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/0ee019e19a8ab1a61731648021d713]
~> TaskHandler[id: 109; name: STAR_ALIGN (30); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/c0b51051ac9422e90e2f436c34b729]
~> TaskHandler[id: 108; name: STAR_ALIGN (29); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/60f4be2eb9eb7d75f88eefdaef53d2]
~> TaskHandler[id: 113; name: STAR_ALIGN (34); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/a01974a4fb05760e0bbbc197a85220]
~> TaskHandler[id: 115; name: STAR_ALIGN (36); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/4cbed97c64cef85bd3f386859edcad]
~> TaskHandler[id: 110; name: STAR_ALIGN (31); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/47/b6e0089fe400db111241914e416859]
~> TaskHandler[id: 111; name: STAR_ALIGN (32); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/977bd2ccf49bb83a1b328efec82ab2]
.. remaining tasks omitted.
Oct-22 17:17:19.299 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 116; name: STAR_ALIGN (37); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/c4f8e931be51dcf651e61782462089]
Oct-22 17:17:19.303 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:17:19.303 [Task submitter] INFO  nextflow.Session - [27/5a0158] Submitted process > STAR_ALIGN (6)
Oct-22 17:18:53.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 85; name: STAR_ALIGN (6); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/5a01586add0364780cc7f75842a6d4]
Oct-22 17:18:53.111 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:18:53.111 [Task submitter] INFO  nextflow.Session - [6e/9c3909] Submitted process > STAR_ALIGN (28)
Oct-22 17:20:22.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 107; name: STAR_ALIGN (28); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/9c3909097321f4b9d729d23fae2b08]
Oct-22 17:20:30.154 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 97; name: STAR_ALIGN (18); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/2033071f67bae3b4e41b3e9814fd1b]
~> TaskHandler[id: 106; name: STAR_ALIGN (27); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/0ee019e19a8ab1a61731648021d713]
~> TaskHandler[id: 109; name: STAR_ALIGN (30); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/c0b51051ac9422e90e2f436c34b729]
~> TaskHandler[id: 108; name: STAR_ALIGN (29); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/60f4be2eb9eb7d75f88eefdaef53d2]
~> TaskHandler[id: 113; name: STAR_ALIGN (34); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/a01974a4fb05760e0bbbc197a85220]
~> TaskHandler[id: 115; name: STAR_ALIGN (36); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/4cbed97c64cef85bd3f386859edcad]
~> TaskHandler[id: 110; name: STAR_ALIGN (31); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/47/b6e0089fe400db111241914e416859]
~> TaskHandler[id: 111; name: STAR_ALIGN (32); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/977bd2ccf49bb83a1b328efec82ab2]
~> TaskHandler[id: 114; name: STAR_ALIGN (35); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/575484f01ab6b8aae294b83b2169c5]
~> TaskHandler[id: 123; name: STAR_ALIGN (44); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/87b0d881dd1120ffd3fd45347ddf30]
.. remaining tasks omitted.
Oct-22 17:21:38.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 107; name: STAR_ALIGN (28); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/9c3909097321f4b9d729d23fae2b08]
Oct-22 17:21:38.182 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:21:38.182 [Task submitter] INFO  nextflow.Session - [fe/203307] Submitted process > STAR_ALIGN (18)
Oct-22 17:23:54.939 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 97; name: STAR_ALIGN (18); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/2033071f67bae3b4e41b3e9814fd1b]
Oct-22 17:23:54.942 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:23:54.943 [Task submitter] INFO  nextflow.Session - [70/0ee019] Submitted process > STAR_ALIGN (27)
Oct-22 17:25:22.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 106; name: STAR_ALIGN (27); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/0ee019e19a8ab1a61731648021d713]
Oct-22 17:25:30.987 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 109; name: STAR_ALIGN (30); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/c0b51051ac9422e90e2f436c34b729]
~> TaskHandler[id: 108; name: STAR_ALIGN (29); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/60f4be2eb9eb7d75f88eefdaef53d2]
~> TaskHandler[id: 113; name: STAR_ALIGN (34); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/a01974a4fb05760e0bbbc197a85220]
~> TaskHandler[id: 115; name: STAR_ALIGN (36); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/4cbed97c64cef85bd3f386859edcad]
~> TaskHandler[id: 110; name: STAR_ALIGN (31); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/47/b6e0089fe400db111241914e416859]
~> TaskHandler[id: 111; name: STAR_ALIGN (32); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/977bd2ccf49bb83a1b328efec82ab2]
~> TaskHandler[id: 114; name: STAR_ALIGN (35); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/575484f01ab6b8aae294b83b2169c5]
~> TaskHandler[id: 123; name: STAR_ALIGN (44); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/87b0d881dd1120ffd3fd45347ddf30]
~> TaskHandler[id: 117; name: STAR_ALIGN (38); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/330d6f91c7d4ab33aaa231b51b0a66]
~> TaskHandler[id: 122; name: STAR_ALIGN (43); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/458e4ea6db3a195d56883ecc3af63b]
.. remaining tasks omitted.
Oct-22 17:26:26.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 106; name: STAR_ALIGN (27); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/0ee019e19a8ab1a61731648021d713]
Oct-22 17:26:26.422 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:26:26.422 [Task submitter] INFO  nextflow.Session - [6e/c0b510] Submitted process > STAR_ALIGN (30)
Oct-22 17:27:49.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 109; name: STAR_ALIGN (30); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/c0b51051ac9422e90e2f436c34b729]
Oct-22 17:27:49.853 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:27:49.854 [Task submitter] INFO  nextflow.Session - [31/60f4be] Submitted process > STAR_ALIGN (29)
Oct-22 17:29:50.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 108; name: STAR_ALIGN (29); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/60f4be2eb9eb7d75f88eefdaef53d2]
Oct-22 17:29:50.486 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:29:50.486 [Task submitter] INFO  nextflow.Session - [66/a01974] Submitted process > STAR_ALIGN (34)
Oct-22 17:30:22.825 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 113; name: STAR_ALIGN (34); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/a01974a4fb05760e0bbbc197a85220]
Oct-22 17:30:31.505 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 115; name: STAR_ALIGN (36); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/4cbed97c64cef85bd3f386859edcad]
~> TaskHandler[id: 110; name: STAR_ALIGN (31); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/47/b6e0089fe400db111241914e416859]
~> TaskHandler[id: 111; name: STAR_ALIGN (32); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/977bd2ccf49bb83a1b328efec82ab2]
~> TaskHandler[id: 114; name: STAR_ALIGN (35); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/575484f01ab6b8aae294b83b2169c5]
~> TaskHandler[id: 123; name: STAR_ALIGN (44); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/87b0d881dd1120ffd3fd45347ddf30]
~> TaskHandler[id: 117; name: STAR_ALIGN (38); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/330d6f91c7d4ab33aaa231b51b0a66]
~> TaskHandler[id: 122; name: STAR_ALIGN (43); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/458e4ea6db3a195d56883ecc3af63b]
~> TaskHandler[id: 118; name: STAR_ALIGN (39); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c5/abe478f724f2492b85943011d9ad99]
~> TaskHandler[id: 120; name: STAR_ALIGN (41); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/6fcb7dd570f6175da486ad28090dda]
~> TaskHandler[id: 119; name: STAR_ALIGN (40); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/27dc44b6c1ed51b77cfb048cd26514]
.. remaining tasks omitted.
Oct-22 17:31:16.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 113; name: STAR_ALIGN (34); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/a01974a4fb05760e0bbbc197a85220]
Oct-22 17:31:16.683 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:31:16.683 [Task submitter] INFO  nextflow.Session - [91/4cbed9] Submitted process > STAR_ALIGN (36)
Oct-22 17:33:07.813 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 115; name: STAR_ALIGN (36); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/4cbed97c64cef85bd3f386859edcad]
Oct-22 17:33:07.817 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:33:07.817 [Task submitter] INFO  nextflow.Session - [47/b6e008] Submitted process > STAR_ALIGN (31)
Oct-22 17:35:10.137 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 110; name: STAR_ALIGN (31); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/47/b6e0089fe400db111241914e416859]
Oct-22 17:35:10.140 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:35:10.140 [Task submitter] INFO  nextflow.Session - [4c/977bd2] Submitted process > STAR_ALIGN (32)
Oct-22 17:35:22.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 111; name: STAR_ALIGN (32); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/977bd2ccf49bb83a1b328efec82ab2]
Oct-22 17:35:32.153 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 114; name: STAR_ALIGN (35); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/575484f01ab6b8aae294b83b2169c5]
~> TaskHandler[id: 123; name: STAR_ALIGN (44); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/87b0d881dd1120ffd3fd45347ddf30]
~> TaskHandler[id: 117; name: STAR_ALIGN (38); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/330d6f91c7d4ab33aaa231b51b0a66]
~> TaskHandler[id: 122; name: STAR_ALIGN (43); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/458e4ea6db3a195d56883ecc3af63b]
~> TaskHandler[id: 118; name: STAR_ALIGN (39); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c5/abe478f724f2492b85943011d9ad99]
~> TaskHandler[id: 120; name: STAR_ALIGN (41); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/6fcb7dd570f6175da486ad28090dda]
~> TaskHandler[id: 119; name: STAR_ALIGN (40); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/27dc44b6c1ed51b77cfb048cd26514]
~> TaskHandler[id: 121; name: STAR_ALIGN (42); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/3e93025a17f3450faab5570242373e]
~> TaskHandler[id: 124; name: STAR_ALIGN (45); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/4bc69a3046d78581b6b7ee004d1f9c]
~> TaskHandler[id: 125; name: STAR_ALIGN (46); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/768f725cf28d8327cf888c42a49148]
.. remaining tasks omitted.
Oct-22 17:36:44.586 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 111; name: STAR_ALIGN (32); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/977bd2ccf49bb83a1b328efec82ab2]
Oct-22 17:36:44.590 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:36:44.590 [Task submitter] INFO  nextflow.Session - [67/575484] Submitted process > STAR_ALIGN (35)
Oct-22 17:38:34.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 114; name: STAR_ALIGN (35); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/575484f01ab6b8aae294b83b2169c5]
Oct-22 17:38:34.598 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:38:34.598 [Task submitter] INFO  nextflow.Session - [31/87b0d8] Submitted process > STAR_ALIGN (44)
Oct-22 17:39:50.477 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 123; name: STAR_ALIGN (44); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/87b0d881dd1120ffd3fd45347ddf30]
Oct-22 17:39:50.481 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:39:50.481 [Task submitter] INFO  nextflow.Session - [74/330d6f] Submitted process > STAR_ALIGN (38)
Oct-22 17:40:22.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 117; name: STAR_ALIGN (38); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/330d6f91c7d4ab33aaa231b51b0a66]
Oct-22 17:40:32.501 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 122; name: STAR_ALIGN (43); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/458e4ea6db3a195d56883ecc3af63b]
~> TaskHandler[id: 118; name: STAR_ALIGN (39); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c5/abe478f724f2492b85943011d9ad99]
~> TaskHandler[id: 120; name: STAR_ALIGN (41); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/6fcb7dd570f6175da486ad28090dda]
~> TaskHandler[id: 119; name: STAR_ALIGN (40); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/27dc44b6c1ed51b77cfb048cd26514]
~> TaskHandler[id: 121; name: STAR_ALIGN (42); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/3e93025a17f3450faab5570242373e]
~> TaskHandler[id: 124; name: STAR_ALIGN (45); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/4bc69a3046d78581b6b7ee004d1f9c]
~> TaskHandler[id: 125; name: STAR_ALIGN (46); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/768f725cf28d8327cf888c42a49148]
~> TaskHandler[id: 126; name: STAR_ALIGN (47); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/cadf91ea90913f1dfbfe4f35a1e7d5]
~> TaskHandler[id: 128; name: STAR_ALIGN (49); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/1a4f30fa7c2f49f521b1145d70bd71]
~> TaskHandler[id: 127; name: STAR_ALIGN (48); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/2c6e2040824b62ef70dad895e39458]
.. remaining tasks omitted.
Oct-22 17:41:28.084 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 117; name: STAR_ALIGN (38); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/330d6f91c7d4ab33aaa231b51b0a66]
Oct-22 17:41:28.087 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:41:28.087 [Task submitter] INFO  nextflow.Session - [55/458e4e] Submitted process > STAR_ALIGN (43)
Oct-22 17:43:25.707 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 122; name: STAR_ALIGN (43); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/458e4ea6db3a195d56883ecc3af63b]
Oct-22 17:43:25.711 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:43:25.711 [Task submitter] INFO  nextflow.Session - [c5/abe478] Submitted process > STAR_ALIGN (39)
Oct-22 17:45:22.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 118; name: STAR_ALIGN (39); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c5/abe478f724f2492b85943011d9ad99]
Oct-22 17:45:26.149 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 118; name: STAR_ALIGN (39); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c5/abe478f724f2492b85943011d9ad99]
Oct-22 17:45:26.153 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:45:26.153 [Task submitter] INFO  nextflow.Session - [1f/6fcb7d] Submitted process > STAR_ALIGN (41)
Oct-22 17:45:33.159 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 119; name: STAR_ALIGN (40); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/27dc44b6c1ed51b77cfb048cd26514]
~> TaskHandler[id: 121; name: STAR_ALIGN (42); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/3e93025a17f3450faab5570242373e]
~> TaskHandler[id: 124; name: STAR_ALIGN (45); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/4bc69a3046d78581b6b7ee004d1f9c]
~> TaskHandler[id: 125; name: STAR_ALIGN (46); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/768f725cf28d8327cf888c42a49148]
~> TaskHandler[id: 126; name: STAR_ALIGN (47); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/cadf91ea90913f1dfbfe4f35a1e7d5]
~> TaskHandler[id: 128; name: STAR_ALIGN (49); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/1a4f30fa7c2f49f521b1145d70bd71]
~> TaskHandler[id: 127; name: STAR_ALIGN (48); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/2c6e2040824b62ef70dad895e39458]
~> TaskHandler[id: 129; name: STAR_ALIGN (50); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/f7b26bb109b13eabea6dc3ce37e929]
~> TaskHandler[id: 131; name: STAR_ALIGN (52); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/dddd56d9979b3e8d33aaabefc7c349]
~> TaskHandler[id: 133; name: STAR_ALIGN (54); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/c02cbc2094ff323f0475510a79420c]
.. remaining tasks omitted.
Oct-22 17:49:15.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 120; name: STAR_ALIGN (41); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/6fcb7dd570f6175da486ad28090dda]
Oct-22 17:49:15.227 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:49:15.227 [Task submitter] INFO  nextflow.Session - [4b/27dc44] Submitted process > STAR_ALIGN (40)
Oct-22 17:50:23.012 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 119; name: STAR_ALIGN (40); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/27dc44b6c1ed51b77cfb048cd26514]
Oct-22 17:50:33.264 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 121; name: STAR_ALIGN (42); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/3e93025a17f3450faab5570242373e]
~> TaskHandler[id: 124; name: STAR_ALIGN (45); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/4bc69a3046d78581b6b7ee004d1f9c]
~> TaskHandler[id: 125; name: STAR_ALIGN (46); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/768f725cf28d8327cf888c42a49148]
~> TaskHandler[id: 126; name: STAR_ALIGN (47); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/cadf91ea90913f1dfbfe4f35a1e7d5]
~> TaskHandler[id: 128; name: STAR_ALIGN (49); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/1a4f30fa7c2f49f521b1145d70bd71]
~> TaskHandler[id: 127; name: STAR_ALIGN (48); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/2c6e2040824b62ef70dad895e39458]
~> TaskHandler[id: 129; name: STAR_ALIGN (50); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/f7b26bb109b13eabea6dc3ce37e929]
~> TaskHandler[id: 131; name: STAR_ALIGN (52); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/dddd56d9979b3e8d33aaabefc7c349]
~> TaskHandler[id: 133; name: STAR_ALIGN (54); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/c02cbc2094ff323f0475510a79420c]
~> TaskHandler[id: 130; name: STAR_ALIGN (51); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/dd77a6177f20c4a10d8a7c68c57cf9]
.. remaining tasks omitted.
Oct-22 17:51:13.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 119; name: STAR_ALIGN (40); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/27dc44b6c1ed51b77cfb048cd26514]
Oct-22 17:51:13.968 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:51:13.969 [Task submitter] INFO  nextflow.Session - [9c/3e9302] Submitted process > STAR_ALIGN (42)
Oct-22 17:53:27.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 121; name: STAR_ALIGN (42); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/3e93025a17f3450faab5570242373e]
Oct-22 17:53:27.412 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:53:27.413 [Task submitter] INFO  nextflow.Session - [5d/4bc69a] Submitted process > STAR_ALIGN (45)
Oct-22 17:55:03.847 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 124; name: STAR_ALIGN (45); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/4bc69a3046d78581b6b7ee004d1f9c]
Oct-22 17:55:03.850 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:55:03.850 [Task submitter] INFO  nextflow.Session - [33/768f72] Submitted process > STAR_ALIGN (46)
Oct-22 17:55:23.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 125; name: STAR_ALIGN (46); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/768f725cf28d8327cf888c42a49148]
Oct-22 17:55:33.865 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 126; name: STAR_ALIGN (47); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/cadf91ea90913f1dfbfe4f35a1e7d5]
~> TaskHandler[id: 128; name: STAR_ALIGN (49); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/1a4f30fa7c2f49f521b1145d70bd71]
~> TaskHandler[id: 127; name: STAR_ALIGN (48); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/2c6e2040824b62ef70dad895e39458]
~> TaskHandler[id: 129; name: STAR_ALIGN (50); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/f7b26bb109b13eabea6dc3ce37e929]
~> TaskHandler[id: 131; name: STAR_ALIGN (52); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/dddd56d9979b3e8d33aaabefc7c349]
~> TaskHandler[id: 133; name: STAR_ALIGN (54); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/c02cbc2094ff323f0475510a79420c]
~> TaskHandler[id: 130; name: STAR_ALIGN (51); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/dd77a6177f20c4a10d8a7c68c57cf9]
~> TaskHandler[id: 132; name: STAR_ALIGN (53); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/dd8c7ed316dc12625d396ea3fe421e]
~> TaskHandler[id: 134; name: STAR_ALIGN (55); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/1ee84e7d47874e479ae2502f352bf6]
~> TaskHandler[id: 136; name: STAR_ALIGN (57); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/f5e5f5bdca9a76672b306631aca05a]
.. remaining tasks omitted.
Oct-22 17:56:48.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 125; name: STAR_ALIGN (46); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/768f725cf28d8327cf888c42a49148]
Oct-22 17:56:48.171 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:56:48.171 [Task submitter] INFO  nextflow.Session - [ea/cadf91] Submitted process > STAR_ALIGN (47)
Oct-22 17:58:27.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 126; name: STAR_ALIGN (47); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/cadf91ea90913f1dfbfe4f35a1e7d5]
Oct-22 17:58:27.521 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 17:58:27.522 [Task submitter] INFO  nextflow.Session - [15/1a4f30] Submitted process > STAR_ALIGN (49)
Oct-22 18:00:23.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 128; name: STAR_ALIGN (49); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/1a4f30fa7c2f49f521b1145d70bd71]
Oct-22 18:00:34.580 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 127; name: STAR_ALIGN (48); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/2c6e2040824b62ef70dad895e39458]
~> TaskHandler[id: 129; name: STAR_ALIGN (50); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/f7b26bb109b13eabea6dc3ce37e929]
~> TaskHandler[id: 131; name: STAR_ALIGN (52); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/dddd56d9979b3e8d33aaabefc7c349]
~> TaskHandler[id: 133; name: STAR_ALIGN (54); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/c02cbc2094ff323f0475510a79420c]
~> TaskHandler[id: 130; name: STAR_ALIGN (51); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/dd77a6177f20c4a10d8a7c68c57cf9]
~> TaskHandler[id: 132; name: STAR_ALIGN (53); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/dd8c7ed316dc12625d396ea3fe421e]
~> TaskHandler[id: 134; name: STAR_ALIGN (55); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/1ee84e7d47874e479ae2502f352bf6]
~> TaskHandler[id: 136; name: STAR_ALIGN (57); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/f5e5f5bdca9a76672b306631aca05a]
~> TaskHandler[id: 135; name: STAR_ALIGN (56); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/c9382ead322f8deb5e1fe5edf7a593]
~> TaskHandler[id: 139; name: STAR_ALIGN (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b05cbf434e8779733664d4fa63cc65]
.. remaining tasks omitted.
Oct-22 18:00:40.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 128; name: STAR_ALIGN (49); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/1a4f30fa7c2f49f521b1145d70bd71]
Oct-22 18:00:40.231 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:00:40.231 [Task submitter] INFO  nextflow.Session - [90/2c6e20] Submitted process > STAR_ALIGN (48)
Oct-22 18:02:47.381 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 127; name: STAR_ALIGN (48); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/2c6e2040824b62ef70dad895e39458]
Oct-22 18:02:47.385 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:02:47.385 [Task submitter] INFO  nextflow.Session - [55/f7b26b] Submitted process > STAR_ALIGN (50)
Oct-22 18:05:17.601 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 129; name: STAR_ALIGN (50); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/f7b26bb109b13eabea6dc3ce37e929]
Oct-22 18:05:17.605 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:05:17.605 [Task submitter] INFO  nextflow.Session - [4e/dddd56] Submitted process > STAR_ALIGN (52)
Oct-22 18:05:23.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 131; name: STAR_ALIGN (52); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/dddd56d9979b3e8d33aaabefc7c349]
Oct-22 18:05:34.615 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 133; name: STAR_ALIGN (54); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/c02cbc2094ff323f0475510a79420c]
~> TaskHandler[id: 130; name: STAR_ALIGN (51); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/dd77a6177f20c4a10d8a7c68c57cf9]
~> TaskHandler[id: 132; name: STAR_ALIGN (53); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/dd8c7ed316dc12625d396ea3fe421e]
~> TaskHandler[id: 134; name: STAR_ALIGN (55); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/1ee84e7d47874e479ae2502f352bf6]
~> TaskHandler[id: 136; name: STAR_ALIGN (57); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/f5e5f5bdca9a76672b306631aca05a]
~> TaskHandler[id: 135; name: STAR_ALIGN (56); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/c9382ead322f8deb5e1fe5edf7a593]
~> TaskHandler[id: 139; name: STAR_ALIGN (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b05cbf434e8779733664d4fa63cc65]
~> TaskHandler[id: 137; name: STAR_ALIGN (58); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/636a1f6b395ede0f8918296f3cb1f0]
~> TaskHandler[id: 138; name: STAR_ALIGN (59); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/0d399ff4fa249e92bdca0c4f64a0c3]
~> TaskHandler[id: 140; name: STAR_ALIGN (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a1bb605373ecc43f669b8cb812cde4]
.. remaining tasks omitted.
Oct-22 18:06:48.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 131; name: STAR_ALIGN (52); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/dddd56d9979b3e8d33aaabefc7c349]
Oct-22 18:06:48.327 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:06:48.328 [Task submitter] INFO  nextflow.Session - [a6/c02cbc] Submitted process > STAR_ALIGN (54)
Oct-22 18:08:44.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 133; name: STAR_ALIGN (54); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/c02cbc2094ff323f0475510a79420c]
Oct-22 18:08:44.019 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:08:44.019 [Task submitter] INFO  nextflow.Session - [34/dd77a6] Submitted process > STAR_ALIGN (51)
Oct-22 18:10:23.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 130; name: STAR_ALIGN (51); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/dd77a6177f20c4a10d8a7c68c57cf9]
Oct-22 18:10:35.067 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 132; name: STAR_ALIGN (53); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/dd8c7ed316dc12625d396ea3fe421e]
~> TaskHandler[id: 134; name: STAR_ALIGN (55); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/1ee84e7d47874e479ae2502f352bf6]
~> TaskHandler[id: 136; name: STAR_ALIGN (57); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/f5e5f5bdca9a76672b306631aca05a]
~> TaskHandler[id: 135; name: STAR_ALIGN (56); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/c9382ead322f8deb5e1fe5edf7a593]
~> TaskHandler[id: 139; name: STAR_ALIGN (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b05cbf434e8779733664d4fa63cc65]
~> TaskHandler[id: 137; name: STAR_ALIGN (58); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/636a1f6b395ede0f8918296f3cb1f0]
~> TaskHandler[id: 138; name: STAR_ALIGN (59); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/0d399ff4fa249e92bdca0c4f64a0c3]
~> TaskHandler[id: 140; name: STAR_ALIGN (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a1bb605373ecc43f669b8cb812cde4]
~> TaskHandler[id: 143; name: STAR_ALIGN (64); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0605eb168a4d3255104a1178bb21a]
~> TaskHandler[id: 141; name: STAR_ALIGN (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/e0f879e5599ee40a6d6d0883f2b21a]
.. remaining tasks omitted.
Oct-22 18:11:05.586 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 130; name: STAR_ALIGN (51); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/dd77a6177f20c4a10d8a7c68c57cf9]
Oct-22 18:11:05.590 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:11:05.590 [Task submitter] INFO  nextflow.Session - [a4/dd8c7e] Submitted process > STAR_ALIGN (53)
Oct-22 18:13:24.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 132; name: STAR_ALIGN (53); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/dd8c7ed316dc12625d396ea3fe421e]
Oct-22 18:13:24.948 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:13:24.948 [Task submitter] INFO  nextflow.Session - [e5/1ee84e] Submitted process > STAR_ALIGN (55)
Oct-22 18:15:23.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 134; name: STAR_ALIGN (55); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/1ee84e7d47874e479ae2502f352bf6]
Oct-22 18:15:36.004 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 136; name: STAR_ALIGN (57); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/f5e5f5bdca9a76672b306631aca05a]
~> TaskHandler[id: 135; name: STAR_ALIGN (56); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/c9382ead322f8deb5e1fe5edf7a593]
~> TaskHandler[id: 139; name: STAR_ALIGN (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b05cbf434e8779733664d4fa63cc65]
~> TaskHandler[id: 137; name: STAR_ALIGN (58); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/636a1f6b395ede0f8918296f3cb1f0]
~> TaskHandler[id: 138; name: STAR_ALIGN (59); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/0d399ff4fa249e92bdca0c4f64a0c3]
~> TaskHandler[id: 140; name: STAR_ALIGN (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a1bb605373ecc43f669b8cb812cde4]
~> TaskHandler[id: 143; name: STAR_ALIGN (64); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0605eb168a4d3255104a1178bb21a]
~> TaskHandler[id: 141; name: STAR_ALIGN (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/e0f879e5599ee40a6d6d0883f2b21a]
~> TaskHandler[id: 145; name: STAR_ALIGN (66); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/7f20895d53712da1adae5590a294f3]
~> TaskHandler[id: 142; name: STAR_ALIGN (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/824261cbe04bff00c67d35e37eeffd]
.. remaining tasks omitted.
Oct-22 18:15:48.604 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 134; name: STAR_ALIGN (55); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/1ee84e7d47874e479ae2502f352bf6]
Oct-22 18:15:48.608 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:15:48.608 [Task submitter] INFO  nextflow.Session - [94/f5e5f5] Submitted process > STAR_ALIGN (57)
Oct-22 18:18:46.916 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 136; name: STAR_ALIGN (57); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/f5e5f5bdca9a76672b306631aca05a]
Oct-22 18:18:46.921 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:18:46.922 [Task submitter] INFO  nextflow.Session - [8f/c9382e] Submitted process > STAR_ALIGN (56)
Oct-22 18:20:23.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 135; name: STAR_ALIGN (56); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/c9382ead322f8deb5e1fe5edf7a593]
Oct-22 18:20:36.970 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 139; name: STAR_ALIGN (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b05cbf434e8779733664d4fa63cc65]
~> TaskHandler[id: 137; name: STAR_ALIGN (58); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/636a1f6b395ede0f8918296f3cb1f0]
~> TaskHandler[id: 138; name: STAR_ALIGN (59); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/0d399ff4fa249e92bdca0c4f64a0c3]
~> TaskHandler[id: 140; name: STAR_ALIGN (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a1bb605373ecc43f669b8cb812cde4]
~> TaskHandler[id: 143; name: STAR_ALIGN (64); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0605eb168a4d3255104a1178bb21a]
~> TaskHandler[id: 141; name: STAR_ALIGN (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/e0f879e5599ee40a6d6d0883f2b21a]
~> TaskHandler[id: 145; name: STAR_ALIGN (66); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/7f20895d53712da1adae5590a294f3]
~> TaskHandler[id: 142; name: STAR_ALIGN (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/824261cbe04bff00c67d35e37eeffd]
~> TaskHandler[id: 146; name: STAR_ALIGN (67); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/ed63c76b40b8327b4f7555febd0597]
~> TaskHandler[id: 144; name: STAR_ALIGN (65); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a1de88e8b390b36061ee2298f840cd]
.. remaining tasks omitted.
Oct-22 18:20:57.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 135; name: STAR_ALIGN (56); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/c9382ead322f8deb5e1fe5edf7a593]
Oct-22 18:20:57.963 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:20:57.963 [Task submitter] INFO  nextflow.Session - [cf/b05cbf] Submitted process > STAR_ALIGN (60)
Oct-22 18:23:09.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 139; name: STAR_ALIGN (60); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/b05cbf434e8779733664d4fa63cc65]
Oct-22 18:23:09.566 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:23:09.567 [Task submitter] INFO  nextflow.Session - [b1/636a1f] Submitted process > STAR_ALIGN (58)
Oct-22 18:24:57.620 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 137; name: STAR_ALIGN (58); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/636a1f6b395ede0f8918296f3cb1f0]
Oct-22 18:24:57.624 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:24:57.624 [Task submitter] INFO  nextflow.Session - [92/0d399f] Submitted process > STAR_ALIGN (59)
Oct-22 18:25:23.352 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 138; name: STAR_ALIGN (59); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/0d399ff4fa249e92bdca0c4f64a0c3]
Oct-22 18:25:37.643 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 140; name: STAR_ALIGN (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a1bb605373ecc43f669b8cb812cde4]
~> TaskHandler[id: 143; name: STAR_ALIGN (64); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0605eb168a4d3255104a1178bb21a]
~> TaskHandler[id: 141; name: STAR_ALIGN (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/e0f879e5599ee40a6d6d0883f2b21a]
~> TaskHandler[id: 145; name: STAR_ALIGN (66); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/7f20895d53712da1adae5590a294f3]
~> TaskHandler[id: 142; name: STAR_ALIGN (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/824261cbe04bff00c67d35e37eeffd]
~> TaskHandler[id: 146; name: STAR_ALIGN (67); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/ed63c76b40b8327b4f7555febd0597]
~> TaskHandler[id: 144; name: STAR_ALIGN (65); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a1de88e8b390b36061ee2298f840cd]
~> TaskHandler[id: 147; name: STAR_ALIGN (68); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/45f165c84d4edab3802f9fdaf76c4f]
~> TaskHandler[id: 148; name: STAR_ALIGN (69); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/c7df187478e11877d512bac6a2e03b]
~> TaskHandler[id: 149; name: STAR_ALIGN (70); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/f4beaff4ad3000a152ac6e01b0b099]
.. remaining tasks omitted.
Oct-22 18:27:47.790 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 138; name: STAR_ALIGN (59); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/0d399ff4fa249e92bdca0c4f64a0c3]
Oct-22 18:27:47.794 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:27:47.794 [Task submitter] INFO  nextflow.Session - [b8/a1bb60] Submitted process > STAR_ALIGN (61)
Oct-22 18:29:33.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 140; name: STAR_ALIGN (61); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a1bb605373ecc43f669b8cb812cde4]
Oct-22 18:29:33.511 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:29:33.511 [Task submitter] INFO  nextflow.Session - [35/d0605e] Submitted process > STAR_ALIGN (64)
Oct-22 18:30:23.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 143; name: STAR_ALIGN (64); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0605eb168a4d3255104a1178bb21a]
Oct-22 18:30:38.540 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 141; name: STAR_ALIGN (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/e0f879e5599ee40a6d6d0883f2b21a]
~> TaskHandler[id: 145; name: STAR_ALIGN (66); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/7f20895d53712da1adae5590a294f3]
~> TaskHandler[id: 142; name: STAR_ALIGN (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/824261cbe04bff00c67d35e37eeffd]
~> TaskHandler[id: 146; name: STAR_ALIGN (67); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/ed63c76b40b8327b4f7555febd0597]
~> TaskHandler[id: 144; name: STAR_ALIGN (65); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a1de88e8b390b36061ee2298f840cd]
~> TaskHandler[id: 147; name: STAR_ALIGN (68); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/45f165c84d4edab3802f9fdaf76c4f]
~> TaskHandler[id: 148; name: STAR_ALIGN (69); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/c7df187478e11877d512bac6a2e03b]
~> TaskHandler[id: 149; name: STAR_ALIGN (70); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/f4beaff4ad3000a152ac6e01b0b099]
~> TaskHandler[id: 151; name: STAR_ALIGN (72); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/b9c5975b177b4f2bec498351286594]
~> TaskHandler[id: 150; name: STAR_ALIGN (71); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/fdeab1d92f4afe5957e374be0143cf]
.. remaining tasks omitted.
Oct-22 18:31:54.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 143; name: STAR_ALIGN (64); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0605eb168a4d3255104a1178bb21a]
Oct-22 18:31:54.189 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:31:54.189 [Task submitter] INFO  nextflow.Session - [e3/e0f879] Submitted process > STAR_ALIGN (62)
Oct-22 18:33:37.434 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 141; name: STAR_ALIGN (62); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/e0f879e5599ee40a6d6d0883f2b21a]
Oct-22 18:33:37.438 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:33:37.438 [Task submitter] INFO  nextflow.Session - [9f/7f2089] Submitted process > STAR_ALIGN (66)
Oct-22 18:35:23.461 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 145; name: STAR_ALIGN (66); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/7f20895d53712da1adae5590a294f3]
Oct-22 18:35:39.494 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 142; name: STAR_ALIGN (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/824261cbe04bff00c67d35e37eeffd]
~> TaskHandler[id: 146; name: STAR_ALIGN (67); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/ed63c76b40b8327b4f7555febd0597]
~> TaskHandler[id: 144; name: STAR_ALIGN (65); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a1de88e8b390b36061ee2298f840cd]
~> TaskHandler[id: 147; name: STAR_ALIGN (68); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/45f165c84d4edab3802f9fdaf76c4f]
~> TaskHandler[id: 148; name: STAR_ALIGN (69); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/c7df187478e11877d512bac6a2e03b]
~> TaskHandler[id: 149; name: STAR_ALIGN (70); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/f4beaff4ad3000a152ac6e01b0b099]
~> TaskHandler[id: 151; name: STAR_ALIGN (72); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/b9c5975b177b4f2bec498351286594]
~> TaskHandler[id: 150; name: STAR_ALIGN (71); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/fdeab1d92f4afe5957e374be0143cf]
~> TaskHandler[id: 152; name: STAR_ALIGN (73); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/4ec359ba199b26c9604ddd67dd175e]
~> TaskHandler[id: 153; name: STAR_ALIGN (74); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/d8af59787ecde80ac366f5f3ee12bc]
.. remaining tasks omitted.
Oct-22 18:35:48.806 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 145; name: STAR_ALIGN (66); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/7f20895d53712da1adae5590a294f3]
Oct-22 18:35:48.810 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:35:48.810 [Task submitter] INFO  nextflow.Session - [7a/824261] Submitted process > STAR_ALIGN (63)
Oct-22 18:37:32.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 142; name: STAR_ALIGN (63); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/824261cbe04bff00c67d35e37eeffd]
Oct-22 18:37:32.206 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:37:32.206 [Task submitter] INFO  nextflow.Session - [94/ed63c7] Submitted process > STAR_ALIGN (67)
Oct-22 18:39:28.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 146; name: STAR_ALIGN (67); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/ed63c76b40b8327b4f7555febd0597]
Oct-22 18:39:28.864 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:39:28.865 [Task submitter] INFO  nextflow.Session - [84/a1de88] Submitted process > STAR_ALIGN (65)
Oct-22 18:40:23.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 144; name: STAR_ALIGN (65); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a1de88e8b390b36061ee2298f840cd]
Oct-22 18:40:39.901 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 147; name: STAR_ALIGN (68); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/45f165c84d4edab3802f9fdaf76c4f]
~> TaskHandler[id: 148; name: STAR_ALIGN (69); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/c7df187478e11877d512bac6a2e03b]
~> TaskHandler[id: 149; name: STAR_ALIGN (70); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/f4beaff4ad3000a152ac6e01b0b099]
~> TaskHandler[id: 151; name: STAR_ALIGN (72); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/b9c5975b177b4f2bec498351286594]
~> TaskHandler[id: 150; name: STAR_ALIGN (71); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/fdeab1d92f4afe5957e374be0143cf]
~> TaskHandler[id: 152; name: STAR_ALIGN (73); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/4ec359ba199b26c9604ddd67dd175e]
~> TaskHandler[id: 153; name: STAR_ALIGN (74); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/d8af59787ecde80ac366f5f3ee12bc]
~> TaskHandler[id: 154; name: STAR_ALIGN (75); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/a6544977582425dea6b8cc7464f993]
~> TaskHandler[id: 155; name: STAR_ALIGN (76); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/e643e3787b6743d64f648ea63ea62c]
~> TaskHandler[id: 156; name: BAM_COLLAPSE (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/cb2eb467daf0ca1a53a5503a394b22]
.. remaining tasks omitted.
Oct-22 18:41:15.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 144; name: STAR_ALIGN (65); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/a1de88e8b390b36061ee2298f840cd]
Oct-22 18:41:15.702 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:41:15.702 [Task submitter] INFO  nextflow.Session - [f9/45f165] Submitted process > STAR_ALIGN (68)
Oct-22 18:43:22.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 147; name: STAR_ALIGN (68); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/45f165c84d4edab3802f9fdaf76c4f]
Oct-22 18:43:22.042 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:43:22.043 [Task submitter] INFO  nextflow.Session - [b6/c7df18] Submitted process > STAR_ALIGN (69)
Oct-22 18:45:23.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 148; name: STAR_ALIGN (69); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/c7df187478e11877d512bac6a2e03b]
Oct-22 18:45:40.103 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 149; name: STAR_ALIGN (70); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/f4beaff4ad3000a152ac6e01b0b099]
~> TaskHandler[id: 151; name: STAR_ALIGN (72); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/b9c5975b177b4f2bec498351286594]
~> TaskHandler[id: 150; name: STAR_ALIGN (71); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/fdeab1d92f4afe5957e374be0143cf]
~> TaskHandler[id: 152; name: STAR_ALIGN (73); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/4ec359ba199b26c9604ddd67dd175e]
~> TaskHandler[id: 153; name: STAR_ALIGN (74); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/d8af59787ecde80ac366f5f3ee12bc]
~> TaskHandler[id: 154; name: STAR_ALIGN (75); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/a6544977582425dea6b8cc7464f993]
~> TaskHandler[id: 155; name: STAR_ALIGN (76); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/e643e3787b6743d64f648ea63ea62c]
~> TaskHandler[id: 156; name: BAM_COLLAPSE (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/cb2eb467daf0ca1a53a5503a394b22]
~> TaskHandler[id: 157; name: BAM_COLLAPSE (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e51423d716eb0b626eb7021c6b6c76]
~> TaskHandler[id: 158; name: BAM_COLLAPSE (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/9ba6f3937ddc422e55f141e7228bd5]
.. remaining tasks omitted.
Oct-22 18:45:55.509 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 148; name: STAR_ALIGN (69); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/c7df187478e11877d512bac6a2e03b]
Oct-22 18:45:55.513 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:45:55.513 [Task submitter] INFO  nextflow.Session - [17/f4beaf] Submitted process > STAR_ALIGN (70)
Oct-22 18:48:40.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 149; name: STAR_ALIGN (70); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/f4beaff4ad3000a152ac6e01b0b099]
Oct-22 18:48:40.973 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:48:40.973 [Task submitter] INFO  nextflow.Session - [c2/b9c597] Submitted process > STAR_ALIGN (72)
Oct-22 18:50:23.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 151; name: STAR_ALIGN (72); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/b9c5975b177b4f2bec498351286594]
Oct-22 18:50:41.023 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 150; name: STAR_ALIGN (71); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/fdeab1d92f4afe5957e374be0143cf]
~> TaskHandler[id: 152; name: STAR_ALIGN (73); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/4ec359ba199b26c9604ddd67dd175e]
~> TaskHandler[id: 153; name: STAR_ALIGN (74); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/d8af59787ecde80ac366f5f3ee12bc]
~> TaskHandler[id: 154; name: STAR_ALIGN (75); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/a6544977582425dea6b8cc7464f993]
~> TaskHandler[id: 155; name: STAR_ALIGN (76); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/e643e3787b6743d64f648ea63ea62c]
~> TaskHandler[id: 156; name: BAM_COLLAPSE (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/cb2eb467daf0ca1a53a5503a394b22]
~> TaskHandler[id: 157; name: BAM_COLLAPSE (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e51423d716eb0b626eb7021c6b6c76]
~> TaskHandler[id: 158; name: BAM_COLLAPSE (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/9ba6f3937ddc422e55f141e7228bd5]
~> TaskHandler[id: 159; name: BAM_COLLAPSE (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/16fe9bca9445ece86476417167e187]
~> TaskHandler[id: 160; name: BAM_COLLAPSE (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/8b5df0bb5bfc8795c752dcee50a5a8]
.. remaining tasks omitted.
Oct-22 18:50:47.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 151; name: STAR_ALIGN (72); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/b9c5975b177b4f2bec498351286594]
Oct-22 18:50:47.478 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:50:47.478 [Task submitter] INFO  nextflow.Session - [1b/fdeab1] Submitted process > STAR_ALIGN (71)
Oct-22 18:53:39.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 150; name: STAR_ALIGN (71); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/fdeab1d92f4afe5957e374be0143cf]
Oct-22 18:53:39.590 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:53:39.591 [Task submitter] INFO  nextflow.Session - [44/4ec359] Submitted process > STAR_ALIGN (73)
Oct-22 18:55:23.604 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 152; name: STAR_ALIGN (73); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/4ec359ba199b26c9604ddd67dd175e]
Oct-22 18:55:38.649 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 152; name: STAR_ALIGN (73); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/4ec359ba199b26c9604ddd67dd175e]
Oct-22 18:55:38.653 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:55:38.653 [Task submitter] INFO  nextflow.Session - [5d/d8af59] Submitted process > STAR_ALIGN (74)
Oct-22 18:55:41.656 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 154; name: STAR_ALIGN (75); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/a6544977582425dea6b8cc7464f993]
~> TaskHandler[id: 155; name: STAR_ALIGN (76); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/e643e3787b6743d64f648ea63ea62c]
~> TaskHandler[id: 156; name: BAM_COLLAPSE (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/cb2eb467daf0ca1a53a5503a394b22]
~> TaskHandler[id: 157; name: BAM_COLLAPSE (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e51423d716eb0b626eb7021c6b6c76]
~> TaskHandler[id: 158; name: BAM_COLLAPSE (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/9ba6f3937ddc422e55f141e7228bd5]
~> TaskHandler[id: 159; name: BAM_COLLAPSE (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/16fe9bca9445ece86476417167e187]
~> TaskHandler[id: 160; name: BAM_COLLAPSE (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/8b5df0bb5bfc8795c752dcee50a5a8]
~> TaskHandler[id: 161; name: BAM_COLLAPSE (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/20b6d23cdea4dac0586c158b83500c]
~> TaskHandler[id: 162; name: BAM_COLLAPSE (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2b/ed78a76989669ff78f3d6c0fc23ae6]
~> TaskHandler[id: 163; name: BAM_COLLAPSE (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/56/5ee591e57c378e38af871f23c1c0c2]
.. remaining tasks omitted.
Oct-22 18:57:55.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 153; name: STAR_ALIGN (74); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/d8af59787ecde80ac366f5f3ee12bc]
Oct-22 18:57:55.720 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 18:57:55.720 [Task submitter] INFO  nextflow.Session - [e2/a65449] Submitted process > STAR_ALIGN (75)
Oct-22 19:00:23.687 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 154; name: STAR_ALIGN (75); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/a6544977582425dea6b8cc7464f993]
Oct-22 19:00:41.789 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 75 -- tasks to be submitted are shown below
~> TaskHandler[id: 155; name: STAR_ALIGN (76); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/e643e3787b6743d64f648ea63ea62c]
~> TaskHandler[id: 156; name: BAM_COLLAPSE (1); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/cb2eb467daf0ca1a53a5503a394b22]
~> TaskHandler[id: 157; name: BAM_COLLAPSE (2); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e51423d716eb0b626eb7021c6b6c76]
~> TaskHandler[id: 158; name: BAM_COLLAPSE (3); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/9ba6f3937ddc422e55f141e7228bd5]
~> TaskHandler[id: 159; name: BAM_COLLAPSE (4); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/16fe9bca9445ece86476417167e187]
~> TaskHandler[id: 160; name: BAM_COLLAPSE (5); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/8b5df0bb5bfc8795c752dcee50a5a8]
~> TaskHandler[id: 161; name: BAM_COLLAPSE (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/20b6d23cdea4dac0586c158b83500c]
~> TaskHandler[id: 162; name: BAM_COLLAPSE (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2b/ed78a76989669ff78f3d6c0fc23ae6]
~> TaskHandler[id: 163; name: BAM_COLLAPSE (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/56/5ee591e57c378e38af871f23c1c0c2]
~> TaskHandler[id: 164; name: BAM_COLLAPSE (9); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/1c85a18e0c9763b321a2b6ab65079f]
.. remaining tasks omitted.
Oct-22 19:01:26.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 154; name: STAR_ALIGN (75); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/a6544977582425dea6b8cc7464f993]
Oct-22 19:01:26.848 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:01:26.848 [Task submitter] INFO  nextflow.Session - [67/e643e3] Submitted process > STAR_ALIGN (76)
Oct-22 19:04:36.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 155; name: STAR_ALIGN (76); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/e643e3787b6743d64f648ea63ea62c]
Oct-22 19:04:36.758 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:36.758 [Task submitter] INFO  nextflow.Session - [1b/cb2eb4] Submitted process > BAM_COLLAPSE (1)
Oct-22 19:04:47.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 156; name: BAM_COLLAPSE (1); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/cb2eb467daf0ca1a53a5503a394b22]
Oct-22 19:04:47.848 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:47.849 [Task submitter] INFO  nextflow.Session - [70/e51423] Submitted process > BAM_COLLAPSE (2)
Oct-22 19:04:48.854 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:48.855 [Task submitter] INFO  nextflow.Session - [f5/20b294] Submitted process > BAM_SPLIT (1)
Oct-22 19:04:48.859 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:48.859 [Task submitter] INFO  nextflow.Session - [b1/eb6273] Submitted process > ADD_EMPTY_COUNTS (RNAneuro236_trimmed_tRNAs-almost-mapped)
Oct-22 19:04:48.863 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:48.863 [Task submitter] INFO  nextflow.Session - [f5/09ff0d] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro236_trimmed_tRNAs-almost-mapped)
Oct-22 19:04:49.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 234; name: ADD_EMPTY_COUNTS (RNAneuro236_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/eb627327554d6ed6903a83dd4a5453]
Oct-22 19:04:51.183 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 232; name: BAM_SPLIT (1); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/20b294188cedca37fd058912a8eafc]
Oct-22 19:04:51.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 233; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro236_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/09ff0da0249fd3c664931435c7d8db]
Oct-22 19:04:51.602 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:51.602 [Task submitter] INFO  nextflow.Session - [c6/f5ba92] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro236_trimmed_accepted_hits_ncRNAs)
Oct-22 19:04:51.606 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:51.606 [Task submitter] INFO  nextflow.Session - [dc/f5057f] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro236_trimmed_accepted_hits_tRNAs)
Oct-22 19:04:51.609 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:51.609 [Task submitter] INFO  nextflow.Session - [0a/3f5eb0] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro236_trimmed_accepted_hits_tRNAs)
Oct-22 19:04:51.613 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:51.613 [Task submitter] INFO  nextflow.Session - [45/1bcd7d] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro236_trimmed_accepted_hits_ncRNAs)
Oct-22 19:04:51.616 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:51.616 [Task submitter] INFO  nextflow.Session - [45/1721fb] Submitted process > FEATURE_COUNT_TRNA (RNAneuro236_trimmed_accepted_hits_tRNAs)
Oct-22 19:04:52.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 237; name: FEATURE_COUNT_TRNA (RNAneuro236_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/1721fb57eebd41ade26d8e232dce0f]
Oct-22 19:04:52.222 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 238; name: FEATURE_COUNT_NCRNA (RNAneuro236_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/1bcd7d94383f3a0a2a45221f474da1]
Oct-22 19:04:54.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 236; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro236_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/f5057f9d04ee2de6e33087bb86691b]
Oct-22 19:04:55.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 239; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro236_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/3f5eb0ecb3df8b6e68f602003dc005]
Oct-22 19:04:56.495 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:56.495 [Task submitter] INFO  nextflow.Session - [40/3e23e1] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro236_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:04:56.499 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:04:56.499 [Task submitter] INFO  nextflow.Session - [72/87e8b9] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro236_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:04:56.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 241; name: GENERATE_DEPTHFILE_STATS (RNAneuro236_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/3e23e10d53725adf23462a03d22856]
Oct-22 19:04:59.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 157; name: BAM_COLLAPSE (2); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e51423d716eb0b626eb7021c6b6c76]
Oct-22 19:05:00.002 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:00.003 [Task submitter] INFO  nextflow.Session - [74/9ba6f3] Submitted process > BAM_COLLAPSE (3)
Oct-22 19:05:01.137 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:01.137 [Task submitter] INFO  nextflow.Session - [63/d43ad0] Submitted process > BAM_SPLIT (2)
Oct-22 19:05:01.141 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:01.141 [Task submitter] INFO  nextflow.Session - [74/b6ccc2] Submitted process > ADD_EMPTY_COUNTS (RNAneuro220_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:01.145 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:01.145 [Task submitter] INFO  nextflow.Session - [c1/f07806] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro220_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:01.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 244; name: ADD_EMPTY_COUNTS (RNAneuro220_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/b6ccc23946cc7889418751fd42a5dd]
Oct-22 19:05:01.940 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 240; name: PLOT_TRNA_ALL_PLOTS (RNAneuro236_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/72/87e8b91056025db0aa981ec736b288]
Oct-22 19:05:03.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 242; name: BAM_SPLIT (2); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/63/d43ad0eddd610595bcabefa4e3d748]
Oct-22 19:05:03.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 243; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro220_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/f07806b373c772015433a336e8efdc]
Oct-22 19:05:03.441 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:03.441 [Task submitter] INFO  nextflow.Session - [fc/d643a1] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro220_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:03.444 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:03.444 [Task submitter] INFO  nextflow.Session - [5b/d4e1f5] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro220_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:03.465 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:03.465 [Task submitter] INFO  nextflow.Session - [c9/d1f4e2] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro220_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:03.467 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:03.467 [Task submitter] INFO  nextflow.Session - [24/4b5f34] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro220_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:03.470 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:03.470 [Task submitter] INFO  nextflow.Session - [12/5acee4] Submitted process > FEATURE_COUNT_TRNA (RNAneuro220_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:03.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 247; name: FEATURE_COUNT_TRNA (RNAneuro220_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/5acee4c2520c20e1932be8fb07e675]
Oct-22 19:05:03.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 246; name: FEATURE_COUNT_NCRNA (RNAneuro220_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/4b5f34a40e66c36efc58a4b682f1ca]
Oct-22 19:05:04.395 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 158; name: BAM_COLLAPSE (3); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/9ba6f3937ddc422e55f141e7228bd5]
Oct-22 19:05:04.398 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:04.399 [Task submitter] INFO  nextflow.Session - [d8/16fe9b] Submitted process > BAM_COLLAPSE (4)
Oct-22 19:05:05.403 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:05.404 [Task submitter] INFO  nextflow.Session - [6a/8c9c96] Submitted process > BAM_SPLIT (3)
Oct-22 19:05:05.407 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:05.408 [Task submitter] INFO  nextflow.Session - [c2/1954d0] Submitted process > ADD_EMPTY_COUNTS (RNAneuro226_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:05.411 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:05.411 [Task submitter] INFO  nextflow.Session - [73/377e12] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro226_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:05.495 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 251; name: ADD_EMPTY_COUNTS (RNAneuro226_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/1954d02d655f9a3a79ba7a33a0d698]
Oct-22 19:05:07.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 249; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro220_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/d4e1f51878eb31750f43baeb53b4f7]
Oct-22 19:05:07.301 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 250; name: BAM_SPLIT (3); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/8c9c96cae902a4375071eedd1da15a]
Oct-22 19:05:07.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 248; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro220_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c9/d1f4e2b49446d5e640a4e9020a3b74]
Oct-22 19:05:07.717 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:07.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 252; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro226_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/377e12b698ee31e88aebc01f387cb6]
Oct-22 19:05:07.718 [Task submitter] INFO  nextflow.Session - [c7/40f263] Submitted process > FEATURE_COUNT_TRNA (RNAneuro226_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:07.722 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:07.722 [Task submitter] INFO  nextflow.Session - [22/52ee47] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro226_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:07.726 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:07.726 [Task submitter] INFO  nextflow.Session - [48/1ec28d] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro226_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:07.729 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:07.730 [Task submitter] INFO  nextflow.Session - [69/5e3bc2] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro226_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:07.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:07.734 [Task submitter] INFO  nextflow.Session - [d2/d392ab] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro226_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:07.738 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:07.739 [Task submitter] INFO  nextflow.Session - [7a/e48d92] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro220_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:08.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 255; name: FEATURE_COUNT_TRNA (RNAneuro226_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c7/40f263ec473c2fabdf99fad2f78ccc]
Oct-22 19:05:08.221 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:08.221 [Task submitter] INFO  nextflow.Session - [75/a570e3] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro220_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:08.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 257; name: FEATURE_COUNT_NCRNA (RNAneuro226_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d2/d392aba4a200949090e049a5a17ec8]
Oct-22 19:05:08.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 259; name: GENERATE_DEPTHFILE_STATS (RNAneuro220_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/75/a570e3cc03a4f592a0a0c5e2b5c6ff]
Oct-22 19:05:11.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 253; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro226_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/52ee4745d4431b910aedb9c913c10a]
Oct-22 19:05:12.181 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 254; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro226_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/5e3bc2990108a3e073a9ec6e10adee]
Oct-22 19:05:12.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 258; name: PLOT_TRNA_ALL_PLOTS (RNAneuro220_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/e48d92791bc3d52e71fbd3e63d0b34]
Oct-22 19:05:12.276 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:12.276 [Task submitter] INFO  nextflow.Session - [32/539fd5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro226_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:12.281 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:12.282 [Task submitter] INFO  nextflow.Session - [1b/18a857] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro226_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:12.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 260; name: GENERATE_DEPTHFILE_STATS (RNAneuro226_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/539fd517686316f980474a58c2127f]
Oct-22 19:05:16.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 261; name: PLOT_TRNA_ALL_PLOTS (RNAneuro226_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/18a857d60d58bb0f15504def4bb5bc]
Oct-22 19:05:23.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- submitted tasks are shown below
~> TaskHandler[id: 235; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro236_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/f5ba92b2e67b9724b7f7495317723b]
~> TaskHandler[id: 245; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro220_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/d643a1b15709674ad165838041d5e8]
~> TaskHandler[id: 159; name: BAM_COLLAPSE (4); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/16fe9bca9445ece86476417167e187]
~> TaskHandler[id: 256; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro226_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/1ec28de8e170e3e041445850f6e145]
Oct-22 19:05:27.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 159; name: BAM_COLLAPSE (4); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/16fe9bca9445ece86476417167e187]
Oct-22 19:05:27.585 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:27.585 [Task submitter] INFO  nextflow.Session - [94/8b5df0] Submitted process > BAM_COLLAPSE (5)
Oct-22 19:05:28.590 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:28.590 [Task submitter] INFO  nextflow.Session - [dd/8cae27] Submitted process > BAM_SPLIT (4)
Oct-22 19:05:28.594 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:28.594 [Task submitter] INFO  nextflow.Session - [32/d13d13] Submitted process > ADD_EMPTY_COUNTS (RNAneuro217_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:28.598 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:28.598 [Task submitter] INFO  nextflow.Session - [99/3ce753] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro217_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:28.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 264; name: ADD_EMPTY_COUNTS (RNAneuro217_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/d13d1360eb3cf8d585df01f51306bd]
Oct-22 19:05:30.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 263; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro217_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/99/3ce7532bfba6f0a213727c3c0cd7c6]
Oct-22 19:05:31.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 262; name: BAM_SPLIT (4); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dd/8cae27e2b196e1c138830428716e58]
Oct-22 19:05:32.125 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:32.125 [Task submitter] INFO  nextflow.Session - [bd/4a6aac] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro217_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:32.129 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:32.129 [Task submitter] INFO  nextflow.Session - [52/26d21f] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro217_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:32.137 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:32.137 [Task submitter] INFO  nextflow.Session - [4d/22d902] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro217_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:32.141 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:32.141 [Task submitter] INFO  nextflow.Session - [88/354763] Submitted process > FEATURE_COUNT_TRNA (RNAneuro217_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:32.146 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:32.146 [Task submitter] INFO  nextflow.Session - [08/cc7d36] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro217_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:32.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 268; name: FEATURE_COUNT_TRNA (RNAneuro217_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/88/3547630c605cb853b0e92afafc0926]
Oct-22 19:05:32.450 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 265; name: FEATURE_COUNT_NCRNA (RNAneuro217_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4d/22d90275a2b954836ec25f2494d490]
Oct-22 19:05:34.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 266; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro217_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/4a6aac77605cffac7e8bc5ef4196d1]
Oct-22 19:05:35.833 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 269; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro217_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/cc7d36e9718f8d671864f7311fbe8c]
Oct-22 19:05:36.837 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:36.837 [Task submitter] INFO  nextflow.Session - [87/1e6d4d] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro217_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:36.842 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:36.842 [Task submitter] INFO  nextflow.Session - [7d/24f9d2] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro217_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:37.121 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 271; name: GENERATE_DEPTHFILE_STATS (RNAneuro217_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/1e6d4d1c8dca39958543be689e94db]
Oct-22 19:05:38.238 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 235; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro236_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/f5ba92b2e67b9724b7f7495317723b]
Oct-22 19:05:39.242 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:39.243 [Task submitter] INFO  nextflow.Session - [4f/4d1084] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro236_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:05:40.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 270; name: PLOT_TRNA_ALL_PLOTS (RNAneuro217_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/24f9d296f0636684d41a0d13af6cd4]
Oct-22 19:05:40.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 272; name: GENERATE_DEPTHFILE_STATS (RNAneuro236_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/4d1084cd6409f2e160f731495a0213]
Oct-22 19:05:42.690 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 71 -- tasks to be submitted are shown below
~> TaskHandler[id: 161; name: BAM_COLLAPSE (6); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/20b6d23cdea4dac0586c158b83500c]
~> TaskHandler[id: 162; name: BAM_COLLAPSE (7); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2b/ed78a76989669ff78f3d6c0fc23ae6]
~> TaskHandler[id: 163; name: BAM_COLLAPSE (8); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/56/5ee591e57c378e38af871f23c1c0c2]
~> TaskHandler[id: 164; name: BAM_COLLAPSE (9); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/1c85a18e0c9763b321a2b6ab65079f]
~> TaskHandler[id: 165; name: BAM_COLLAPSE (10); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/e58d0980e2dd8ca4413db98815f697]
~> TaskHandler[id: 166; name: BAM_COLLAPSE (11); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/30cc0e574ca4f4dfc98f557835c920]
~> TaskHandler[id: 167; name: BAM_COLLAPSE (12); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/2fd97fbf62d85d4b957b7c72c2ac33]
~> TaskHandler[id: 168; name: BAM_COLLAPSE (13); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/3d67a168ec320b8a53a1785ee85ecf]
~> TaskHandler[id: 169; name: BAM_COLLAPSE (14); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a8/d074f42906cb58083e2d9b53c4fccb]
~> TaskHandler[id: 170; name: BAM_COLLAPSE (15); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/6d76ceaf6dfe6145a75dab375e2331]
.. remaining tasks omitted.
Oct-22 19:05:44.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 160; name: BAM_COLLAPSE (5); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/8b5df0bb5bfc8795c752dcee50a5a8]
Oct-22 19:05:44.714 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:44.714 [Task submitter] INFO  nextflow.Session - [48/20b6d2] Submitted process > BAM_COLLAPSE (6)
Oct-22 19:05:45.720 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:45.720 [Task submitter] INFO  nextflow.Session - [6a/7dec0f] Submitted process > BAM_SPLIT (5)
Oct-22 19:05:45.724 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:45.724 [Task submitter] INFO  nextflow.Session - [28/c0f7ff] Submitted process > ADD_EMPTY_COUNTS (RNAneuro221_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:45.727 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:45.728 [Task submitter] INFO  nextflow.Session - [5c/0d3842] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro221_trimmed_tRNAs-almost-mapped)
Oct-22 19:05:45.811 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 275; name: ADD_EMPTY_COUNTS (RNAneuro221_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/28/c0f7ffcb5ba9d3475e2b74d53235d6]
Oct-22 19:05:48.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 274; name: BAM_SPLIT (5); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/7dec0f0d56ab32827646fefe96ba8d]
Oct-22 19:05:48.441 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 273; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro221_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/0d3842e8e51a0480a880ef1e0b295c]
Oct-22 19:05:48.447 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:48.447 [Task submitter] INFO  nextflow.Session - [c0/858d42] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro221_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:48.451 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:48.451 [Task submitter] INFO  nextflow.Session - [bb/ff11eb] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro221_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:48.454 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:48.454 [Task submitter] INFO  nextflow.Session - [02/cef642] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro221_trimmed_accepted_hits_ncRNAs)
Oct-22 19:05:48.457 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:48.457 [Task submitter] INFO  nextflow.Session - [c3/10c4d0] Submitted process > FEATURE_COUNT_TRNA (RNAneuro221_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:48.460 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:48.460 [Task submitter] INFO  nextflow.Session - [34/7f7fc7] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro221_trimmed_accepted_hits_tRNAs)
Oct-22 19:05:48.914 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 278; name: FEATURE_COUNT_TRNA (RNAneuro221_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c3/10c4d0eb699e8038171cd7aeb3535b]
Oct-22 19:05:49.000 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 276; name: FEATURE_COUNT_NCRNA (RNAneuro221_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/02/cef642b9d0175c7655d9921d4c0406]
Oct-22 19:05:51.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 245; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro220_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/d643a1b15709674ad165838041d5e8]
Oct-22 19:05:52.024 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 279; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro221_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c0/858d421df184256783e5e4a7f33a77]
Oct-22 19:05:52.030 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:52.031 [Task submitter] INFO  nextflow.Session - [16/b84a20] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro220_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:05:52.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 280; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro221_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/7f7fc79c31c5732dc2408f1ce0a577]
Oct-22 19:05:53.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 281; name: GENERATE_DEPTHFILE_STATS (RNAneuro220_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/b84a20f683b0303db42fd1862fd2f4]
Oct-22 19:05:53.437 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:53.437 [Task submitter] INFO  nextflow.Session - [aa/4ef117] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro221_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:53.442 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:53.442 [Task submitter] INFO  nextflow.Session - [cc/229cb2] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro221_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:05:53.730 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 283; name: GENERATE_DEPTHFILE_STATS (RNAneuro221_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/aa/4ef1177f6f5a6d1f8cf38b3f1d634b]
Oct-22 19:05:55.291 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 256; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro226_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/1ec28de8e170e3e041445850f6e145]
Oct-22 19:05:56.295 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:05:56.296 [Task submitter] INFO  nextflow.Session - [b8/a74a44] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro226_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:05:57.434 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 282; name: PLOT_TRNA_ALL_PLOTS (RNAneuro221_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cc/229cb2e40b4ddfdb35189af7259c87]
Oct-22 19:05:57.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 284; name: GENERATE_DEPTHFILE_STATS (RNAneuro226_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/a74a4471814c15bc1a1afed8fc5059]
Oct-22 19:06:08.699 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 161; name: BAM_COLLAPSE (6); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/20b6d23cdea4dac0586c158b83500c]
Oct-22 19:06:08.702 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:08.702 [Task submitter] INFO  nextflow.Session - [2b/ed78a7] Submitted process > BAM_COLLAPSE (7)
Oct-22 19:06:09.707 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:09.707 [Task submitter] INFO  nextflow.Session - [0f/8a56d9] Submitted process > BAM_SPLIT (6)
Oct-22 19:06:09.710 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:09.710 [Task submitter] INFO  nextflow.Session - [8e/991919] Submitted process > ADD_EMPTY_COUNTS (RNAneuro215_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:09.714 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:09.714 [Task submitter] INFO  nextflow.Session - [34/94c968] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro215_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:09.796 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 285; name: ADD_EMPTY_COUNTS (RNAneuro215_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/9919198692b5a6e40b1b1b433f64bd]
Oct-22 19:06:11.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 287; name: BAM_SPLIT (6); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/8a56d9c6561165e7c6ff2fa8dd053c]
Oct-22 19:06:11.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 286; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro215_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/94c968bfc4f6c316424f36cd2f0dad]
Oct-22 19:06:11.969 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:11.969 [Task submitter] INFO  nextflow.Session - [e7/18043f] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro215_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:11.973 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:11.974 [Task submitter] INFO  nextflow.Session - [33/e14b4b] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro215_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:11.977 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:11.977 [Task submitter] INFO  nextflow.Session - [58/17ccab] Submitted process > FEATURE_COUNT_TRNA (RNAneuro215_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:11.980 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:11.981 [Task submitter] INFO  nextflow.Session - [bb/418280] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro215_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:11.984 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:11.984 [Task submitter] INFO  nextflow.Session - [77/01d473] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro215_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:11.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 162; name: BAM_COLLAPSE (7); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2b/ed78a76989669ff78f3d6c0fc23ae6]
Oct-22 19:06:11.999 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:12.000 [Task submitter] INFO  nextflow.Session - [56/5ee591] Submitted process > BAM_COLLAPSE (8)
Oct-22 19:06:12.307 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 289; name: FEATURE_COUNT_TRNA (RNAneuro215_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/17ccab2712a205f15f896bc4118d96]
Oct-22 19:06:12.310 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:12.310 [Task submitter] INFO  nextflow.Session - [15/d0cefb] Submitted process > BAM_SPLIT (7)
Oct-22 19:06:12.313 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:12.313 [Task submitter] INFO  nextflow.Session - [66/b48468] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro214_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:12.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 290; name: FEATURE_COUNT_NCRNA (RNAneuro215_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/77/01d473c2a47b42ebec22955fc6effd]
Oct-22 19:06:12.420 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:12.420 [Task submitter] INFO  nextflow.Session - [bd/cd2f12] Submitted process > ADD_EMPTY_COUNTS (RNAneuro214_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:12.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 295; name: ADD_EMPTY_COUNTS (RNAneuro214_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/cd2f1246fe34a428c248a8a32d0634]
Oct-22 19:06:14.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 294; name: BAM_SPLIT (7); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/d0cefb62deeeb177596fb9e895d986]
Oct-22 19:06:15.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 293; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro214_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/b484687147354546a1cdd0e388ea6e]
Oct-22 19:06:15.705 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:15.705 [Task submitter] INFO  nextflow.Session - [12/9e6dd4] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro214_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:15.708 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:15.708 [Task submitter] INFO  nextflow.Session - [cc/d8b020] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro214_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:15.710 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:15.710 [Task submitter] INFO  nextflow.Session - [21/c2e96d] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro214_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:16.616 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 291; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro215_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/18043f95999aa1cb7eb2c1f3297556]
Oct-22 19:06:16.619 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:16.619 [Task submitter] INFO  nextflow.Session - [83/78e14c] Submitted process > FEATURE_COUNT_TRNA (RNAneuro214_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:16.704 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 299; name: FEATURE_COUNT_TRNA (RNAneuro214_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/78e14c572bab74d0acbaebaf397a5d]
Oct-22 19:06:16.707 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:16.707 [Task submitter] INFO  nextflow.Session - [5e/476fe2] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro214_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:16.870 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 298; name: FEATURE_COUNT_NCRNA (RNAneuro214_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/476fe2b7e3ec97e36c67b889bcc021]
Oct-22 19:06:17.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 292; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro215_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/4182804c64d55545d7478786721c61]
Oct-22 19:06:18.335 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:18.336 [Task submitter] INFO  nextflow.Session - [e8/3be1e6] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro215_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:18.338 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:18.338 [Task submitter] INFO  nextflow.Session - [e5/f0cad0] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro215_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:18.651 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 302; name: GENERATE_DEPTHFILE_STATS (RNAneuro215_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/3be1e6906532adbe1fe904fd451f98]
Oct-22 19:06:18.814 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 267; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro217_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/26d21f244d375053cb30b05c65f976]
Oct-22 19:06:18.891 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 296; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro214_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/9e6dd43107aa854de3e89570fa9577]
Oct-22 19:06:18.893 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:18.894 [Task submitter] INFO  nextflow.Session - [61/e665fc] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro217_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:06:19.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 300; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro214_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/21/c2e96d7e4eabe35c160894e99ed80a]
Oct-22 19:06:20.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 303; name: GENERATE_DEPTHFILE_STATS (RNAneuro217_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/e665fc4329ccc841f6cb4341cc28ef]
Oct-22 19:06:20.330 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:20.330 [Task submitter] INFO  nextflow.Session - [ff/631a7e] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro214_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:20.333 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:20.333 [Task submitter] INFO  nextflow.Session - [43/69a423] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro214_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:20.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 305; name: GENERATE_DEPTHFILE_STATS (RNAneuro214_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/69a423c85efd748c960a2f020f18ca]
Oct-22 19:06:22.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 301; name: PLOT_TRNA_ALL_PLOTS (RNAneuro215_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/f0cad0c742450ce20971675db88da1]
Oct-22 19:06:24.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 304; name: PLOT_TRNA_ALL_PLOTS (RNAneuro214_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/631a7e9ecf5e3e9990d557a6c92216]
Oct-22 19:06:33.946 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 163; name: BAM_COLLAPSE (8); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/56/5ee591e57c378e38af871f23c1c0c2]
Oct-22 19:06:33.949 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:33.949 [Task submitter] INFO  nextflow.Session - [cb/1c85a1] Submitted process > BAM_COLLAPSE (9)
Oct-22 19:06:35.071 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:35.072 [Task submitter] INFO  nextflow.Session - [41/321968] Submitted process > BAM_SPLIT (8)
Oct-22 19:06:35.074 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:35.074 [Task submitter] INFO  nextflow.Session - [45/5ac3ed] Submitted process > ADD_EMPTY_COUNTS (RNAneuro231_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:35.077 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:35.078 [Task submitter] INFO  nextflow.Session - [54/f26724] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro231_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:35.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 307; name: ADD_EMPTY_COUNTS (RNAneuro231_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/5ac3edc33855a17d70127359ef04ae]
Oct-22 19:06:37.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 306; name: BAM_SPLIT (8); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/3219682224268dd49eb96ea09b664c]
Oct-22 19:06:37.764 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 277; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro221_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/ff11eba2a1a7209c234d2efc990af9]
Oct-22 19:06:37.766 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:37.767 [Task submitter] INFO  nextflow.Session - [0f/97311a] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro231_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:37.770 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:37.770 [Task submitter] INFO  nextflow.Session - [4c/29c49f] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro231_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:37.772 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:37.772 [Task submitter] INFO  nextflow.Session - [6d/809320] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro231_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:37.775 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:37.775 [Task submitter] INFO  nextflow.Session - [0f/3bba1d] Submitted process > FEATURE_COUNT_TRNA (RNAneuro231_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:37.777 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:37.777 [Task submitter] INFO  nextflow.Session - [ed/1c29ad] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro231_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:38.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 308; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro231_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/f2672488f1da6f22731a03f98ddfc4]
Oct-22 19:06:38.109 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:38.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 312; name: FEATURE_COUNT_TRNA (RNAneuro231_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/3bba1dd667282164146295c026befb]
Oct-22 19:06:38.110 [Task submitter] INFO  nextflow.Session - [6c/28b12b] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro221_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:06:38.238 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 310; name: FEATURE_COUNT_NCRNA (RNAneuro231_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/1c29ad55a6402e2c6f1b02905c5899]
Oct-22 19:06:39.580 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 314; name: GENERATE_DEPTHFILE_STATS (RNAneuro221_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6c/28b12b8ac74ed4a8e22fad3405c0a7]
Oct-22 19:06:41.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 313; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro231_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/97311af11a5d0455cabe3652ed82d7]
Oct-22 19:06:41.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 311; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro231_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/29c49f9d96b604df64603764417476]
Oct-22 19:06:42.452 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 164; name: BAM_COLLAPSE (9); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/1c85a18e0c9763b321a2b6ab65079f]
Oct-22 19:06:42.455 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:42.455 [Task submitter] INFO  nextflow.Session - [0a/e58d09] Submitted process > BAM_COLLAPSE (10)
Oct-22 19:06:42.457 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:42.457 [Task submitter] INFO  nextflow.Session - [a2/706227] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro231_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:42.460 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:42.460 [Task submitter] INFO  nextflow.Session - [36/c5e8d1] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro231_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:42.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 316; name: GENERATE_DEPTHFILE_STATS (RNAneuro231_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/706227eb768d23066fc699e8cf10b8]
Oct-22 19:06:42.716 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:42.716 [Task submitter] INFO  nextflow.Session - [79/e45678] Submitted process > BAM_SPLIT (9)
Oct-22 19:06:42.719 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:42.719 [Task submitter] INFO  nextflow.Session - [22/20f8b3] Submitted process > ADD_EMPTY_COUNTS (RNAneuro216_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:42.722 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:42.723 [Task submitter] INFO  nextflow.Session - [31/39d20f] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro216_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:42.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 319; name: ADD_EMPTY_COUNTS (RNAneuro216_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/20f8b3384c210f9a02c1facf05e593]
Oct-22 19:06:44.379 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 317; name: BAM_SPLIT (9); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/e45678eb539cfcb5bd217da4e6888c]
Oct-22 19:06:44.811 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 318; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro216_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/39d20f2a81719cd81f016a974efdf5]
Oct-22 19:06:44.815 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:44.816 [Task submitter] INFO  nextflow.Session - [17/c91ec9] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro216_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:44.820 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:44.821 [Task submitter] INFO  nextflow.Session - [69/3229b1] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro216_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:44.824 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:44.824 [Task submitter] INFO  nextflow.Session - [86/d5045c] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro216_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:44.827 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:44.827 [Task submitter] INFO  nextflow.Session - [3e/16f08a] Submitted process > FEATURE_COUNT_TRNA (RNAneuro216_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:45.391 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 322; name: FEATURE_COUNT_TRNA (RNAneuro216_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3e/16f08a9dcf72213a4a5942c7a9dc10]
Oct-22 19:06:45.393 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:45.393 [Task submitter] INFO  nextflow.Session - [30/21dbdf] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro216_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:45.555 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 323; name: FEATURE_COUNT_NCRNA (RNAneuro216_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/30/21dbdfaf2bf1185cdc04d7da0c2630]
Oct-22 19:06:47.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 315; name: PLOT_TRNA_ALL_PLOTS (RNAneuro231_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/c5e8d197d77c97b0de4f386bee5840]
Oct-22 19:06:48.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 324; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro216_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/c91ec9639a353375aa875ba5c5fa71]
Oct-22 19:06:48.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 320; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro216_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/3229b15545187c9adad8c70d686af7]
Oct-22 19:06:49.949 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:49.949 [Task submitter] INFO  nextflow.Session - [4e/0d0b31] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro216_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:49.954 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:49.954 [Task submitter] INFO  nextflow.Session - [6e/0ca499] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro216_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:06:50.242 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 326; name: GENERATE_DEPTHFILE_STATS (RNAneuro216_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/0d0b31bea291d4a4e384586a8f4f06]
Oct-22 19:06:52.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 165; name: BAM_COLLAPSE (10); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/e58d0980e2dd8ca4413db98815f697]
Oct-22 19:06:52.200 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:52.200 [Task submitter] INFO  nextflow.Session - [d3/30cc0e] Submitted process > BAM_COLLAPSE (11)
Oct-22 19:06:53.206 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:53.206 [Task submitter] INFO  nextflow.Session - [f1/2cf356] Submitted process > BAM_SPLIT (10)
Oct-22 19:06:53.210 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:53.211 [Task submitter] INFO  nextflow.Session - [f7/a37457] Submitted process > ADD_EMPTY_COUNTS (RNAneuro232_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:53.214 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:53.214 [Task submitter] INFO  nextflow.Session - [0c/134bab] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro232_trimmed_tRNAs-almost-mapped)
Oct-22 19:06:53.483 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 329; name: ADD_EMPTY_COUNTS (RNAneuro232_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/a374574cb54b056120912d0f8c4cfb]
Oct-22 19:06:55.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 327; name: BAM_SPLIT (10); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f1/2cf356606dd684d792a7e304d86132]
Oct-22 19:06:55.906 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 325; name: PLOT_TRNA_ALL_PLOTS (RNAneuro216_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/0ca499276ad369327fba7d93a72d69]
Oct-22 19:06:55.910 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:55.910 [Task submitter] INFO  nextflow.Session - [3d/fece3a] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro232_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:55.915 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:55.916 [Task submitter] INFO  nextflow.Session - [08/601a01] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro232_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:55.920 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:55.920 [Task submitter] INFO  nextflow.Session - [04/ee7040] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro232_trimmed_accepted_hits_ncRNAs)
Oct-22 19:06:56.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 328; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro232_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0c/134babb2fa3191999f204642b8313c]
Oct-22 19:06:56.463 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:56.463 [Task submitter] INFO  nextflow.Session - [f0/0728a8] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro232_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:56.739 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 334; name: FEATURE_COUNT_NCRNA (RNAneuro232_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/ee7040de3f48e89d62b17166dd4b35]
Oct-22 19:06:56.743 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:06:56.743 [Task submitter] INFO  nextflow.Session - [89/56fc8e] Submitted process > FEATURE_COUNT_TRNA (RNAneuro232_trimmed_accepted_hits_tRNAs)
Oct-22 19:06:56.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 333; name: FEATURE_COUNT_TRNA (RNAneuro232_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/89/56fc8ee98567523b934b15e4dfa57e]
Oct-22 19:06:59.730 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 332; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro232_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3d/fece3a3330d28fc4f334f02cd9111e]
Oct-22 19:07:00.314 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 330; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro232_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f0/0728a8437e9d07cdf5703131acac47]
Oct-22 19:07:01.317 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:01.317 [Task submitter] INFO  nextflow.Session - [4c/c8ce69] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro232_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:01.320 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:01.320 [Task submitter] INFO  nextflow.Session - [ea/e42bab] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro232_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:01.623 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 336; name: GENERATE_DEPTHFILE_STATS (RNAneuro232_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/c8ce69a7358081cdf2d43e9742e17a]
Oct-22 19:07:02.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 166; name: BAM_COLLAPSE (11); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/30cc0e574ca4f4dfc98f557835c920]
Oct-22 19:07:02.839 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:02.839 [Task submitter] INFO  nextflow.Session - [08/2fd97f] Submitted process > BAM_COLLAPSE (12)
Oct-22 19:07:03.601 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 288; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro215_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/e14b4be10b64e7cb8202ac63269937]
Oct-22 19:07:03.604 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:03.604 [Task submitter] INFO  nextflow.Session - [d8/4bb44f] Submitted process > BAM_SPLIT (11)
Oct-22 19:07:03.608 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:03.608 [Task submitter] INFO  nextflow.Session - [19/65d737] Submitted process > ADD_EMPTY_COUNTS (RNAneuro225_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:03.611 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:03.611 [Task submitter] INFO  nextflow.Session - [df/18785b] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro225_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:03.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 338; name: ADD_EMPTY_COUNTS (RNAneuro225_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/19/65d737f703e9c3de83ea06e0e1b12c]
Oct-22 19:07:03.692 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:03.692 [Task submitter] INFO  nextflow.Session - [06/b16208] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro215_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:07:05.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 337; name: BAM_SPLIT (11); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/4bb44ffddcaad3a064285808efe02f]
Oct-22 19:07:06.089 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 339; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro225_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/df/18785baaf8f09be78efc6cb99a724d]
Oct-22 19:07:06.092 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:06.092 [Task submitter] INFO  nextflow.Session - [26/468953] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro225_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:06.095 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:06.095 [Task submitter] INFO  nextflow.Session - [9f/4e03dd] Submitted process > FEATURE_COUNT_TRNA (RNAneuro225_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:06.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 344; name: FEATURE_COUNT_TRNA (RNAneuro225_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/4e03dd2d2e37f4b3f8bba0e71c24f9]
Oct-22 19:07:06.849 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:06.849 [Task submitter] INFO  nextflow.Session - [63/7ca000] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro225_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:07.000 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 340; name: GENERATE_DEPTHFILE_STATS (RNAneuro215_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/06/b162085eb2fffb0bbff186fe502b3a]
Oct-22 19:07:07.003 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:07.003 [Task submitter] INFO  nextflow.Session - [dc/0791ef] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro225_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:07.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 297; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro214_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cc/d8b020be56afec63e13f174a4766fd]
Oct-22 19:07:07.243 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:07.243 [Task submitter] INFO  nextflow.Session - [80/7251d0] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro225_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:07.421 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 345; name: FEATURE_COUNT_NCRNA (RNAneuro225_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/80/7251d0a15872f10609dab327f6b745]
Oct-22 19:07:07.424 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:07.425 [Task submitter] INFO  nextflow.Session - [c1/479f33] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro214_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:07:08.454 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 335; name: PLOT_TRNA_ALL_PLOTS (RNAneuro232_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/e42bab178e532b5476e0b606d60b8f]
Oct-22 19:07:08.935 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 346; name: GENERATE_DEPTHFILE_STATS (RNAneuro214_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/479f3324f12e5025081ca7f3d966ff]
Oct-22 19:07:09.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 343; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro225_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/468953b2d675ed67ced0345b638ebe]
Oct-22 19:07:10.699 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 341; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro225_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/0791efbaec7b39c034decbaacc0c30]
Oct-22 19:07:11.703 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:11.703 [Task submitter] INFO  nextflow.Session - [1b/bb1d90] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro225_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:11.706 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:11.706 [Task submitter] INFO  nextflow.Session - [c4/9d05ca] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro225_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:11.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 348; name: GENERATE_DEPTHFILE_STATS (RNAneuro225_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/bb1d90ab59f76f1987888516438a09]
Oct-22 19:07:15.258 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 167; name: BAM_COLLAPSE (12); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/2fd97fbf62d85d4b957b7c72c2ac33]
Oct-22 19:07:15.261 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:15.261 [Task submitter] INFO  nextflow.Session - [b6/3d67a1] Submitted process > BAM_COLLAPSE (13)
Oct-22 19:07:16.264 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:16.265 [Task submitter] INFO  nextflow.Session - [58/abfdd8] Submitted process > BAM_SPLIT (12)
Oct-22 19:07:16.267 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:16.267 [Task submitter] INFO  nextflow.Session - [64/b452a7] Submitted process > ADD_EMPTY_COUNTS (RNAneuro240_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:16.271 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:16.271 [Task submitter] INFO  nextflow.Session - [83/0ff778] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro240_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:16.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 349; name: ADD_EMPTY_COUNTS (RNAneuro240_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/b452a7463bba8e3318553155bdf22c]
Oct-22 19:07:18.415 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 351; name: BAM_SPLIT (12); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/abfdd800f676c765fb8957b4d915d0]
Oct-22 19:07:18.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 347; name: PLOT_TRNA_ALL_PLOTS (RNAneuro225_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c4/9d05ca5605024992c1611d9bda26c3]
Oct-22 19:07:18.479 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:18.479 [Task submitter] INFO  nextflow.Session - [9e/c4b572] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro240_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:18.482 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:18.482 [Task submitter] INFO  nextflow.Session - [74/378825] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro240_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:18.485 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:18.485 [Task submitter] INFO  nextflow.Session - [6b/f28cca] Submitted process > FEATURE_COUNT_TRNA (RNAneuro240_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:18.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 350; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro240_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/0ff7783acacfa6f6526d26e8209f86]
Oct-22 19:07:18.809 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:18.810 [Task submitter] INFO  nextflow.Session - [a7/f49444] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro240_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:19.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 353; name: FEATURE_COUNT_TRNA (RNAneuro240_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6b/f28cca75a9e52e5bb3e881100b22c3]
Oct-22 19:07:19.048 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:19.048 [Task submitter] INFO  nextflow.Session - [53/1ebc61] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro240_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:19.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 352; name: FEATURE_COUNT_NCRNA (RNAneuro240_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/37882595b06e7c123a51d2dd228e03]
Oct-22 19:07:21.260 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 355; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro240_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9e/c4b572ec55d7cfe923e9352e345a21]
Oct-22 19:07:22.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 354; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro240_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/53/1ebc61b11a7710ded4892e93193691]
Oct-22 19:07:23.671 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:23.671 [Task submitter] INFO  nextflow.Session - [33/bf77bf] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro240_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:23.675 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:23.675 [Task submitter] INFO  nextflow.Session - [20/e266f5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro240_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:23.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 358; name: GENERATE_DEPTHFILE_STATS (RNAneuro240_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/20/e266f5d250ef06ff80b3127ca3e85c]
Oct-22 19:07:25.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 309; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro231_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/8093206ff8ef631cdb328476a359de]
Oct-22 19:07:26.517 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:26.518 [Task submitter] INFO  nextflow.Session - [77/908c2f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro231_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:07:27.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 357; name: PLOT_TRNA_ALL_PLOTS (RNAneuro240_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/bf77bfde3ff7dcc9a8efc91e66d964]
Oct-22 19:07:27.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 359; name: GENERATE_DEPTHFILE_STATS (RNAneuro231_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/77/908c2f74e52724efa04f33c5b69e14]
Oct-22 19:07:31.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 168; name: BAM_COLLAPSE (13); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/3d67a168ec320b8a53a1785ee85ecf]
Oct-22 19:07:31.683 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:31.684 [Task submitter] INFO  nextflow.Session - [a8/d074f4] Submitted process > BAM_COLLAPSE (14)
Oct-22 19:07:32.687 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:32.687 [Task submitter] INFO  nextflow.Session - [de/6fb743] Submitted process > BAM_SPLIT (13)
Oct-22 19:07:32.689 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:32.690 [Task submitter] INFO  nextflow.Session - [89/fb9116] Submitted process > ADD_EMPTY_COUNTS (RNAneuro219_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:32.692 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:32.692 [Task submitter] INFO  nextflow.Session - [58/2c2c4e] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro219_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:32.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 360; name: ADD_EMPTY_COUNTS (RNAneuro219_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/89/fb9116f03f0879b6ba01743396be57]
Oct-22 19:07:34.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 361; name: BAM_SPLIT (13); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/de/6fb743dea66935bb5dbbc340e373c6]
Oct-22 19:07:34.723 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 362; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro219_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/2c2c4e9194d851e0d86325a688aade]
Oct-22 19:07:34.726 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:34.726 [Task submitter] INFO  nextflow.Session - [46/4c83c2] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro219_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:34.729 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:34.729 [Task submitter] INFO  nextflow.Session - [ce/b5d7c9] Submitted process > FEATURE_COUNT_TRNA (RNAneuro219_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:34.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:34.733 [Task submitter] INFO  nextflow.Session - [48/739116] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro219_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:34.736 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:34.736 [Task submitter] INFO  nextflow.Session - [43/cd0baf] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro219_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:35.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 364; name: FEATURE_COUNT_TRNA (RNAneuro219_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/b5d7c9b8cc1fa09c913b263442047e]
Oct-22 19:07:35.131 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:35.132 [Task submitter] INFO  nextflow.Session - [71/fabc36] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro219_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:35.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 365; name: FEATURE_COUNT_NCRNA (RNAneuro219_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/7391162e3d557fbef42f27ddd080b2]
Oct-22 19:07:35.812 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 169; name: BAM_COLLAPSE (14); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a8/d074f42906cb58083e2d9b53c4fccb]
Oct-22 19:07:35.815 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:35.815 [Task submitter] INFO  nextflow.Session - [67/6d76ce] Submitted process > BAM_COLLAPSE (15)
Oct-22 19:07:36.819 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:36.819 [Task submitter] INFO  nextflow.Session - [a7/65175e] Submitted process > BAM_SPLIT (14)
Oct-22 19:07:37.041 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 321; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro216_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/86/d5045c26cb26d7e3a7aa615992af85]
Oct-22 19:07:37.043 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:37.044 [Task submitter] INFO  nextflow.Session - [82/2ac5f2] Submitted process > ADD_EMPTY_COUNTS (RNAneuro224_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:37.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 370; name: ADD_EMPTY_COUNTS (RNAneuro224_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/82/2ac5f2b57abe94cc9a29993d8c9f62]
Oct-22 19:07:37.716 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:37.716 [Task submitter] INFO  nextflow.Session - [6b/31afcd] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro224_trimmed_tRNAs-almost-mapped)
Oct-22 19:07:38.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 363; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro219_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/46/4c83c28a777431a9c7dac4050be016]
Oct-22 19:07:38.966 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:38.967 [Task submitter] INFO  nextflow.Session - [e8/11ba6d] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro216_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:07:38.982 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 369; name: BAM_SPLIT (14); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/65175eed30bac34449fb2558974421]
Oct-22 19:07:39.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 366; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro219_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/cd0bafda026cc01a66d5235f9619b6]
Oct-22 19:07:39.985 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:39.985 [Task submitter] INFO  nextflow.Session - [08/c7f911] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro224_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:39.987 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:39.987 [Task submitter] INFO  nextflow.Session - [7b/c9255b] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro224_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:40.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 375; name: FEATURE_COUNT_NCRNA (RNAneuro224_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7b/c9255bef01ee6dcb9356453fb58334]
Oct-22 19:07:40.659 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:40.659 [Task submitter] INFO  nextflow.Session - [29/9cca10] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro224_trimmed_accepted_hits_ncRNAs)
Oct-22 19:07:40.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 368; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro224_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6b/31afcd4cb24ef8f4cd038c83c4ecfe]
Oct-22 19:07:40.981 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:40.981 [Task submitter] INFO  nextflow.Session - [64/da7a46] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro224_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:41.093 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 371; name: GENERATE_DEPTHFILE_STATS (RNAneuro216_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/11ba6d30e82072bc29de99bf734081]
Oct-22 19:07:41.095 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:41.095 [Task submitter] INFO  nextflow.Session - [0a/79d24a] Submitted process > FEATURE_COUNT_TRNA (RNAneuro224_trimmed_accepted_hits_tRNAs)
Oct-22 19:07:41.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 373; name: FEATURE_COUNT_TRNA (RNAneuro224_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/79d24afa765eba2f04df601f8d8b73]
Oct-22 19:07:41.187 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:41.187 [Task submitter] INFO  nextflow.Session - [fb/64c3f9] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro219_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:41.467 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 378; name: GENERATE_DEPTHFILE_STATS (RNAneuro219_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/64c3f9d3d4aee658cb7a57239b5d16]
Oct-22 19:07:41.470 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:41.470 [Task submitter] INFO  nextflow.Session - [df/134a33] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro219_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:43.220 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 374; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro224_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/c7f911f15da253a1be02a7494ddff6]
Oct-22 19:07:44.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 331; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro232_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/601a010efd0470eb81838df29ef6e3]
Oct-22 19:07:44.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 376; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro224_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/da7a46b7a313cac6058d3aecb02abd]
Oct-22 19:07:44.851 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:44.852 [Task submitter] INFO  nextflow.Session - [ff/06faa9] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro232_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:07:45.459 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 377; name: PLOT_TRNA_ALL_PLOTS (RNAneuro219_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/df/134a33cf5d408cd3d656dd54f6a9bf]
Oct-22 19:07:45.462 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:45.463 [Task submitter] INFO  nextflow.Session - [69/30aab5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro224_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:45.466 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:45.466 [Task submitter] INFO  nextflow.Session - [8d/59bb0b] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro224_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:07:45.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 381; name: GENERATE_DEPTHFILE_STATS (RNAneuro224_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/30aab53ec29418c7d57d82c72d6a62]
Oct-22 19:07:46.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 379; name: GENERATE_DEPTHFILE_STATS (RNAneuro232_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/06faa91c74b759d9872e5be608d9e3]
Oct-22 19:07:49.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 380; name: PLOT_TRNA_ALL_PLOTS (RNAneuro224_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/59bb0b8ec96fe5051aa2c8e3af9297]
Oct-22 19:07:54.420 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 342; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro225_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/63/7ca000ef6e923303be6f90aaaf51a8]
Oct-22 19:07:55.423 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:07:55.424 [Task submitter] INFO  nextflow.Session - [ce/0ca77e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro225_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:07:56.848 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 382; name: GENERATE_DEPTHFILE_STATS (RNAneuro225_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/0ca77eeb666d14fba1ffafbfff3dcd]
Oct-22 19:08:06.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 356; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro240_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/f49444270b7f1cea5451b24c21d019]
Oct-22 19:08:07.221 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:07.221 [Task submitter] INFO  nextflow.Session - [0a/77b841] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro240_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:08:08.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 383; name: GENERATE_DEPTHFILE_STATS (RNAneuro240_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/77b8413e942e6fbdae9850938eef22]
Oct-22 19:08:12.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 170; name: BAM_COLLAPSE (15); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/6d76ceaf6dfe6145a75dab375e2331]
Oct-22 19:08:12.723 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:12.723 [Task submitter] INFO  nextflow.Session - [40/3fdbb6] Submitted process > BAM_COLLAPSE (16)
Oct-22 19:08:13.728 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:13.728 [Task submitter] INFO  nextflow.Session - [a6/901684] Submitted process > BAM_SPLIT (15)
Oct-22 19:08:13.731 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:13.732 [Task submitter] INFO  nextflow.Session - [54/d0ef39] Submitted process > ADD_EMPTY_COUNTS (RNAneuro238_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:13.735 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:13.735 [Task submitter] INFO  nextflow.Session - [8b/4dfa94] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro238_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:13.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 384; name: ADD_EMPTY_COUNTS (RNAneuro238_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/d0ef39e8af46bd978c025b44549dab]
Oct-22 19:08:15.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 385; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro238_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/4dfa94daed0dc5106aaa933d902515]
Oct-22 19:08:15.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 386; name: BAM_SPLIT (15); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/901684a14d28b9de78068c1ee79e24]
Oct-22 19:08:16.762 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:16.763 [Task submitter] INFO  nextflow.Session - [16/20814e] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro238_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:16.767 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:16.767 [Task submitter] INFO  nextflow.Session - [86/c5752d] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro238_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:16.770 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:16.770 [Task submitter] INFO  nextflow.Session - [61/e8ba99] Submitted process > FEATURE_COUNT_TRNA (RNAneuro238_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:16.773 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:16.773 [Task submitter] INFO  nextflow.Session - [9a/903424] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro238_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:16.776 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:16.776 [Task submitter] INFO  nextflow.Session - [73/ec0a8d] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro238_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:17.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 387; name: FEATURE_COUNT_TRNA (RNAneuro238_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/e8ba997dec3e27da6bf97020817ed9]
Oct-22 19:08:17.274 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 390; name: FEATURE_COUNT_NCRNA (RNAneuro238_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9a/90342410297bfd9688b77026d06806]
Oct-22 19:08:20.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 389; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro238_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/ec0a8d9b69024c6c09f7902399278f]
Oct-22 19:08:20.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 391; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro238_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/20814ec8af42887fcc18fc45b250f6]
Oct-22 19:08:20.715 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:20.715 [Task submitter] INFO  nextflow.Session - [31/51790a] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro238_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:08:20.721 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:20.721 [Task submitter] INFO  nextflow.Session - [b5/933cd2] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro238_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:08:20.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 393; name: GENERATE_DEPTHFILE_STATS (RNAneuro238_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/51790aa0bff29194888e238858a723]
Oct-22 19:08:23.148 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 367; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro219_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/fabc367e14a1ab35ff78dd2c883950]
Oct-22 19:08:24.152 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:24.152 [Task submitter] INFO  nextflow.Session - [0f/658a00] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro219_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:08:24.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 392; name: PLOT_TRNA_ALL_PLOTS (RNAneuro238_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b5/933cd2d5e76aa40cb0ef65b77e1b48]
Oct-22 19:08:25.882 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 171; name: BAM_COLLAPSE (16); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/3fdbb68ee02a3dfc989d6720eceb2a]
Oct-22 19:08:25.886 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:25.886 [Task submitter] INFO  nextflow.Session - [c2/6c540c] Submitted process > BAM_COLLAPSE (17)
Oct-22 19:08:26.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 394; name: GENERATE_DEPTHFILE_STATS (RNAneuro219_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/658a001166613c5f65272085a3181f]
Oct-22 19:08:26.743 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:26.743 [Task submitter] INFO  nextflow.Session - [63/f21cca] Submitted process > BAM_SPLIT (16)
Oct-22 19:08:26.746 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:26.747 [Task submitter] INFO  nextflow.Session - [24/d3642a] Submitted process > ADD_EMPTY_COUNTS (RNAneuro237_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:26.750 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:26.750 [Task submitter] INFO  nextflow.Session - [66/b37257] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro237_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:26.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 397; name: ADD_EMPTY_COUNTS (RNAneuro237_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/d3642a3c00e862fd0043cc64c7aad8]
Oct-22 19:08:28.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 395; name: BAM_SPLIT (16); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/63/f21ccaef2013ebad51831dff878ada]
Oct-22 19:08:28.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 396; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro237_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/b372574a5d59278c693ab51614b0c5]
Oct-22 19:08:28.716 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:28.716 [Task submitter] INFO  nextflow.Session - [0e/7823da] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro237_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:28.719 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:28.719 [Task submitter] INFO  nextflow.Session - [ce/000f71] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro237_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:28.722 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:28.724 [Task submitter] INFO  nextflow.Session - [ea/7c49ea] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro237_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:28.726 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:28.727 [Task submitter] INFO  nextflow.Session - [d9/c39cb6] Submitted process > FEATURE_COUNT_TRNA (RNAneuro237_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:28.730 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:28.730 [Task submitter] INFO  nextflow.Session - [00/968324] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro237_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:29.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 398; name: FEATURE_COUNT_TRNA (RNAneuro237_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/c39cb6278cd1c851ed8acb664e92e7]
Oct-22 19:08:29.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 399; name: FEATURE_COUNT_NCRNA (RNAneuro237_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/000f71b8e06f269156ad33963971e3]
Oct-22 19:08:29.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 372; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro224_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/29/9cca10b9d69a5051dc24ff8505946a]
Oct-22 19:08:30.969 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:30.969 [Task submitter] INFO  nextflow.Session - [e5/4c6eb7] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro224_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:08:32.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 403; name: GENERATE_DEPTHFILE_STATS (RNAneuro224_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/4c6eb70216cdb97ec679394023e225]
Oct-22 19:08:32.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 400; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro237_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0e/7823da3c76d0b69bf5a32189cbd2d9]
Oct-22 19:08:33.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 402; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro237_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/00/96832422b6ec0b7d5a6dc5d502678a]
Oct-22 19:08:35.055 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:35.055 [Task submitter] INFO  nextflow.Session - [7d/119365] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro237_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:08:35.059 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:35.059 [Task submitter] INFO  nextflow.Session - [7e/96c98d] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro237_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:08:35.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 172; name: BAM_COLLAPSE (17); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/6c540c3c98fb759bed34e1acaed6ce]
Oct-22 19:08:35.129 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:35.129 [Task submitter] INFO  nextflow.Session - [93/95878d] Submitted process > BAM_COLLAPSE (18)
Oct-22 19:08:35.361 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 405; name: GENERATE_DEPTHFILE_STATS (RNAneuro237_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/96c98d962394d61f51678b8aa2b4e6]
Oct-22 19:08:35.365 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:35.365 [Task submitter] INFO  nextflow.Session - [fe/a256bb] Submitted process > BAM_SPLIT (17)
Oct-22 19:08:35.370 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:35.370 [Task submitter] INFO  nextflow.Session - [b7/7fe9a1] Submitted process > ADD_EMPTY_COUNTS (RNAneuro228_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:35.374 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:35.374 [Task submitter] INFO  nextflow.Session - [c8/a7fbbb] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro228_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:35.463 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 407; name: ADD_EMPTY_COUNTS (RNAneuro228_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/7fe9a1b488f7ce11ff8d84373eab8a]
Oct-22 19:08:37.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 406; name: BAM_SPLIT (17); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/a256bbdada68d0390ac4866163eff9]
Oct-22 19:08:37.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 408; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro228_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/a7fbbb1214faafef82ac70c46c34b8]
Oct-22 19:08:37.491 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:37.492 [Task submitter] INFO  nextflow.Session - [35/70de42] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro228_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:37.495 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:37.496 [Task submitter] INFO  nextflow.Session - [4f/88a71a] Submitted process > FEATURE_COUNT_TRNA (RNAneuro228_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:37.499 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:37.499 [Task submitter] INFO  nextflow.Session - [af/f83ac5] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro228_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:37.502 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:37.502 [Task submitter] INFO  nextflow.Session - [98/b16ddb] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro228_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:37.505 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:37.506 [Task submitter] INFO  nextflow.Session - [d9/18f418] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro228_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:37.914 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 411; name: FEATURE_COUNT_TRNA (RNAneuro228_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/88a71a020c9544bac2453912328fbb]
Oct-22 19:08:38.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 412; name: FEATURE_COUNT_NCRNA (RNAneuro228_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/18f418ac74f4e2e0dcb5018d0fd181]
Oct-22 19:08:39.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 404; name: PLOT_TRNA_ALL_PLOTS (RNAneuro237_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/11936567315f54a7f6424375b30167]
Oct-22 19:08:41.086 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 410; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro228_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/70de423b78963b78443f598f7a9631]
Oct-22 19:08:41.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 409; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro228_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/b16ddb88bba3807e193f07ed2a9c89]
Oct-22 19:08:42.911 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:42.911 [Task submitter] INFO  nextflow.Session - [b4/57e3c4] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro228_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:08:42.915 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:42.915 [Task submitter] INFO  nextflow.Session - [7a/b716f4] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro228_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:08:43.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 415; name: GENERATE_DEPTHFILE_STATS (RNAneuro228_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/57e3c44ee5b7a01920be733751432c]
Oct-22 19:08:46.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 414; name: PLOT_TRNA_ALL_PLOTS (RNAneuro228_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/b716f464d147e69f6078d9eba68068]
Oct-22 19:08:54.058 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 173; name: BAM_COLLAPSE (18); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/93/95878d634c90bd3a1530fcf94e35d6]
Oct-22 19:08:54.060 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:54.060 [Task submitter] INFO  nextflow.Session - [1a/7324ef] Submitted process > BAM_COLLAPSE (19)
Oct-22 19:08:55.064 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:55.064 [Task submitter] INFO  nextflow.Session - [b7/074935] Submitted process > ADD_EMPTY_COUNTS (RNAneuro223_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:55.068 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:55.068 [Task submitter] INFO  nextflow.Session - [0b/2a50db] Submitted process > BAM_SPLIT (18)
Oct-22 19:08:55.071 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:55.071 [Task submitter] INFO  nextflow.Session - [c7/5665be] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro223_trimmed_tRNAs-almost-mapped)
Oct-22 19:08:55.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 417; name: ADD_EMPTY_COUNTS (RNAneuro223_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/07493547421b712027bad4722d6982]
Oct-22 19:08:56.569 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 416; name: BAM_SPLIT (18); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0b/2a50db69942fa32491caeb16b87a7b]
Oct-22 19:08:57.021 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 418; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro223_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c7/5665be632bea12d019277fc3144b9a]
Oct-22 19:08:57.024 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:57.024 [Task submitter] INFO  nextflow.Session - [6c/5ec3b7] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro223_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:57.027 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:57.027 [Task submitter] INFO  nextflow.Session - [ef/5c4fa8] Submitted process > FEATURE_COUNT_TRNA (RNAneuro223_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:57.031 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:57.031 [Task submitter] INFO  nextflow.Session - [f6/fe67c6] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro223_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:57.033 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:57.033 [Task submitter] INFO  nextflow.Session - [4c/d0153f] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro223_trimmed_accepted_hits_tRNAs)
Oct-22 19:08:57.036 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:08:57.036 [Task submitter] INFO  nextflow.Session - [3a/e0ab0f] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro223_trimmed_accepted_hits_ncRNAs)
Oct-22 19:08:57.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 419; name: FEATURE_COUNT_TRNA (RNAneuro223_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ef/5c4fa8fe9c2cd0bfa0444f462d939f]
Oct-22 19:08:57.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 422; name: FEATURE_COUNT_NCRNA (RNAneuro223_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/e0ab0f4e39519be22b8ff428f7b507]
Oct-22 19:09:00.940 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 421; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro223_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6c/5ec3b7ee8c9056c9f1d0d85b11a40f]
Oct-22 19:09:01.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 420; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro223_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/d0153f001137f91913531aa112f69b]
Oct-22 19:09:02.271 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:02.272 [Task submitter] INFO  nextflow.Session - [ce/cec8d2] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro223_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:09:02.275 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:02.276 [Task submitter] INFO  nextflow.Session - [65/eb8456] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro223_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:09:02.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 425; name: GENERATE_DEPTHFILE_STATS (RNAneuro223_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/cec8d29f816b807da05e87032d5997]
Oct-22 19:09:03.456 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 388; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro238_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/86/c5752d731e6fac751072b73f1c8858]
Oct-22 19:09:04.460 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:04.460 [Task submitter] INFO  nextflow.Session - [f3/ad6eea] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro238_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:09:05.900 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 426; name: GENERATE_DEPTHFILE_STATS (RNAneuro238_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f3/ad6eeafdc42ea92a64bef2866782e5]
Oct-22 19:09:06.273 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 424; name: PLOT_TRNA_ALL_PLOTS (RNAneuro223_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/65/eb84564f65784936e13ba229f0e1f9]
Oct-22 19:09:15.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 401; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro237_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/7c49ea864e06e9ed150d756fc00c7a]
Oct-22 19:09:16.925 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:16.925 [Task submitter] INFO  nextflow.Session - [e4/aa238f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro237_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:09:18.315 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 427; name: GENERATE_DEPTHFILE_STATS (RNAneuro237_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/aa238fdc33a2db70d414340ba0df2d]
Oct-22 19:09:24.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 413; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro228_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/af/f83ac526a03c1506ad61def7bb6c2c]
Oct-22 19:09:25.474 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:25.474 [Task submitter] INFO  nextflow.Session - [7f/8347d6] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro228_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:09:26.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 174; name: BAM_COLLAPSE (19); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/7324ef82c52ca7d28ffaef1e6e4c53]
Oct-22 19:09:26.806 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:26.806 [Task submitter] INFO  nextflow.Session - [96/11a70c] Submitted process > BAM_COLLAPSE (20)
Oct-22 19:09:27.516 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 428; name: GENERATE_DEPTHFILE_STATS (RNAneuro228_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/8347d67df81f456644f8dd1bfe37ad]
Oct-22 19:09:27.519 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:27.519 [Task submitter] INFO  nextflow.Session - [8d/82060b] Submitted process > BAM_SPLIT (19)
Oct-22 19:09:27.524 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:27.524 [Task submitter] INFO  nextflow.Session - [b6/7fecd1] Submitted process > ADD_EMPTY_COUNTS (RNAneuro222_trimmed_tRNAs-almost-mapped)
Oct-22 19:09:27.527 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:27.527 [Task submitter] INFO  nextflow.Session - [14/e3653a] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro222_trimmed_tRNAs-almost-mapped)
Oct-22 19:09:27.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 431; name: ADD_EMPTY_COUNTS (RNAneuro222_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/7fecd1f377d214a2a49513d631e7f0]
Oct-22 19:09:29.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 429; name: BAM_SPLIT (19); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/82060bfe8d5b02db9d03203c8c0c4f]
Oct-22 19:09:29.565 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 430; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro222_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/14/e3653a9d7d4eb61baa40ee780d5142]
Oct-22 19:09:29.568 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:29.568 [Task submitter] INFO  nextflow.Session - [5a/ae89da] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro222_trimmed_accepted_hits_tRNAs)
Oct-22 19:09:29.571 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:29.571 [Task submitter] INFO  nextflow.Session - [fe/07e161] Submitted process > FEATURE_COUNT_TRNA (RNAneuro222_trimmed_accepted_hits_tRNAs)
Oct-22 19:09:29.574 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:29.574 [Task submitter] INFO  nextflow.Session - [dc/ea4e6f] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro222_trimmed_accepted_hits_ncRNAs)
Oct-22 19:09:29.577 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:29.577 [Task submitter] INFO  nextflow.Session - [28/6c3f67] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro222_trimmed_accepted_hits_ncRNAs)
Oct-22 19:09:29.580 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:29.580 [Task submitter] INFO  nextflow.Session - [e9/f6ef29] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro222_trimmed_accepted_hits_tRNAs)
Oct-22 19:09:29.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 433; name: FEATURE_COUNT_TRNA (RNAneuro222_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/07e161ede73604c38d28839048675d]
Oct-22 19:09:29.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 435; name: FEATURE_COUNT_NCRNA (RNAneuro222_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/ea4e6f752267eb806059e6d2c7519f]
Oct-22 19:09:33.123 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 434; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro222_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5a/ae89da408cadcea2aeed8c00107b30]
Oct-22 19:09:33.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 436; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro222_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e9/f6ef29277a02cb36553181f4356e4a]
Oct-22 19:09:34.349 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:34.349 [Task submitter] INFO  nextflow.Session - [a0/d4151f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro222_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:09:34.353 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:34.353 [Task submitter] INFO  nextflow.Session - [bc/7fe562] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro222_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:09:34.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 438; name: GENERATE_DEPTHFILE_STATS (RNAneuro222_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a0/d4151f44b132ec154c5ea7f081ebc5]
Oct-22 19:09:38.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 437; name: PLOT_TRNA_ALL_PLOTS (RNAneuro222_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/7fe56248c9b76dee7d7dfa87560f5d]
Oct-22 19:09:43.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 423; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro223_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f6/fe67c65e0a1463574aac95c19fcd1e]
Oct-22 19:09:44.285 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:09:44.286 [Task submitter] INFO  nextflow.Session - [8b/7a441e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro223_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:09:45.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 439; name: GENERATE_DEPTHFILE_STATS (RNAneuro223_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/7a441e03fb73c0c2a850911fc25935]
Oct-22 19:10:03.023 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 175; name: BAM_COLLAPSE (20); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/96/11a70c49609cacae1e4da05a1f001d]
Oct-22 19:10:03.027 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:03.027 [Task submitter] INFO  nextflow.Session - [b1/6f9db7] Submitted process > BAM_COLLAPSE (21)
Oct-22 19:10:04.033 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:04.033 [Task submitter] INFO  nextflow.Session - [be/e771f1] Submitted process > BAM_SPLIT (20)
Oct-22 19:10:04.036 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:04.036 [Task submitter] INFO  nextflow.Session - [6d/c602b3] Submitted process > ADD_EMPTY_COUNTS (RNAneuro235_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:04.040 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:04.040 [Task submitter] INFO  nextflow.Session - [0a/cd5b16] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro235_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:04.135 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 441; name: ADD_EMPTY_COUNTS (RNAneuro235_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/c602b3360bcb05f8a267361c2f22e5]
Oct-22 19:10:06.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 440; name: BAM_SPLIT (20); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/e771f13ab74b323bf6448ddcc7b1fb]
Oct-22 19:10:06.265 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 442; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro235_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/cd5b16cc7c2d86d62358be6633c76e]
Oct-22 19:10:06.270 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:06.270 [Task submitter] INFO  nextflow.Session - [92/7dd4f5] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro235_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:06.275 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:06.275 [Task submitter] INFO  nextflow.Session - [f3/e51502] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro235_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:06.279 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:06.279 [Task submitter] INFO  nextflow.Session - [1a/6ebb57] Submitted process > FEATURE_COUNT_TRNA (RNAneuro235_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:06.282 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:06.282 [Task submitter] INFO  nextflow.Session - [80/f0b4c8] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro235_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:06.285 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:06.285 [Task submitter] INFO  nextflow.Session - [8d/60eb55] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro235_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:07.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 447; name: FEATURE_COUNT_TRNA (RNAneuro235_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/6ebb57ee3b97bec356c235794d7c92]
Oct-22 19:10:07.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 443; name: FEATURE_COUNT_NCRNA (RNAneuro235_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/60eb55b58624fc3335f4803c3de6f2]
Oct-22 19:10:10.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 444; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro235_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/7dd4f56bd357f0a33612a8d008e1c4]
Oct-22 19:10:10.551 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 446; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro235_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f3/e5150269744bb575d06fd1d01ddca3]
Oct-22 19:10:11.556 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:11.556 [Task submitter] INFO  nextflow.Session - [ab/426e28] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro235_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:11.560 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:11.561 [Task submitter] INFO  nextflow.Session - [b6/2b0660] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro235_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:11.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 449; name: GENERATE_DEPTHFILE_STATS (RNAneuro235_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ab/426e28d8db08f86df8346a3b055cac]
Oct-22 19:10:14.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 432; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro222_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/28/6c3f67ffac239055997117a7bdd888]
Oct-22 19:10:15.053 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:15.054 [Task submitter] INFO  nextflow.Session - [d8/f095e1] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro222_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:10:15.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 448; name: PLOT_TRNA_ALL_PLOTS (RNAneuro235_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/2b0660be2989e1c8161b6f0f0e43f2]
Oct-22 19:10:16.476 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 450; name: GENERATE_DEPTHFILE_STATS (RNAneuro222_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/f095e192ffe81a9f2f862dee630a32]
Oct-22 19:10:23.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 176; name: BAM_COLLAPSE (21); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/6f9db7915e84419760dc79d42c3a72]
~> TaskHandler[id: 445; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro235_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/80/f0b4c82766250f07b69dcc2d517c5c]
Oct-22 19:10:25.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 176; name: BAM_COLLAPSE (21); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/6f9db7915e84419760dc79d42c3a72]
Oct-22 19:10:25.630 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:25.631 [Task submitter] INFO  nextflow.Session - [6e/d3a8c1] Submitted process > BAM_COLLAPSE (22)
Oct-22 19:10:26.665 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:26.665 [Task submitter] INFO  nextflow.Session - [ee/d8797c] Submitted process > BAM_SPLIT (21)
Oct-22 19:10:26.668 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:26.668 [Task submitter] INFO  nextflow.Session - [c3/902548] Submitted process > ADD_EMPTY_COUNTS (RNAneuro255_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:26.671 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:26.671 [Task submitter] INFO  nextflow.Session - [b6/e7ea48] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro255_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:26.760 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 451; name: ADD_EMPTY_COUNTS (RNAneuro255_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c3/90254810a0ecab3ea96e0c9495022c]
Oct-22 19:10:28.584 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 453; name: BAM_SPLIT (21); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/d8797ca04b76031e9b3fe3119782db]
Oct-22 19:10:28.705 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 452; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro255_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/e7ea48723cce1666ac00527be2ea20]
Oct-22 19:10:28.708 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:28.708 [Task submitter] INFO  nextflow.Session - [d3/e88356] Submitted process > FEATURE_COUNT_TRNA (RNAneuro255_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:28.712 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:28.712 [Task submitter] INFO  nextflow.Session - [48/99e3ac] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro255_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:28.715 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:28.715 [Task submitter] INFO  nextflow.Session - [76/a1aa80] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro255_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:28.718 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:28.718 [Task submitter] INFO  nextflow.Session - [0b/3b0e1f] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro255_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:28.727 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:28.727 [Task submitter] INFO  nextflow.Session - [43/3b7dbc] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro255_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:29.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 454; name: FEATURE_COUNT_TRNA (RNAneuro255_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/e88356a6d923f67a33fe2f72a09a55]
Oct-22 19:10:29.137 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 456; name: FEATURE_COUNT_NCRNA (RNAneuro255_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0b/3b0e1f892859e7322bd955d18f9499]
Oct-22 19:10:32.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 177; name: BAM_COLLAPSE (22); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/d3a8c1b45f38c1a250270bf7aca4e0]
Oct-22 19:10:32.336 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:32.337 [Task submitter] INFO  nextflow.Session - [f6/fb9d78] Submitted process > BAM_COLLAPSE (23)
Oct-22 19:10:32.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 457; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro255_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/76/a1aa80e951630efbc9ae8bab35bba9]
Oct-22 19:10:32.370 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:32.370 [Task submitter] INFO  nextflow.Session - [73/f5e945] Submitted process > BAM_SPLIT (22)
Oct-22 19:10:32.372 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:32.372 [Task submitter] INFO  nextflow.Session - [3d/27c497] Submitted process > ADD_EMPTY_COUNTS (RNAneuro265_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:32.375 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:32.375 [Task submitter] INFO  nextflow.Session - [32/ca5f3d] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro265_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:32.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 460; name: ADD_EMPTY_COUNTS (RNAneuro265_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3d/27c4970f0a21a8fc8449422b67b87a]
Oct-22 19:10:33.518 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 458; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro255_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/3b7dbc67194a49e184764e50fa9b1a]
Oct-22 19:10:34.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 459; name: BAM_SPLIT (22); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/f5e945b0c1afab50d13e69c88ac928]
Oct-22 19:10:34.180 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:34.180 [Task submitter] INFO  nextflow.Session - [00/713381] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro255_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:34.183 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:34.183 [Task submitter] INFO  nextflow.Session - [bf/203abf] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro255_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:34.629 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 463; name: GENERATE_DEPTHFILE_STATS (RNAneuro255_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/00/7133812b2581e9dd70ef6afd5100c9]
Oct-22 19:10:34.632 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:34.632 [Task submitter] INFO  nextflow.Session - [a0/bb7343] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro265_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:34.635 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:34.635 [Task submitter] INFO  nextflow.Session - [9a/b5146e] Submitted process > FEATURE_COUNT_TRNA (RNAneuro265_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:34.638 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:34.638 [Task submitter] INFO  nextflow.Session - [b1/eed5db] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro265_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:34.643 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:34.643 [Task submitter] INFO  nextflow.Session - [85/285bb4] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro265_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:35.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 461; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro265_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/ca5f3d067eb57b5b7983667cc934da]
Oct-22 19:10:35.058 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:35.059 [Task submitter] INFO  nextflow.Session - [33/a05913] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro265_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:35.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 465; name: FEATURE_COUNT_TRNA (RNAneuro265_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9a/b5146e615760c103d9a97fd9afb7fc]
Oct-22 19:10:35.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 467; name: FEATURE_COUNT_NCRNA (RNAneuro265_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/a059133edf02fa6ec4011f74d187c1]
Oct-22 19:10:38.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 466; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro265_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a0/bb734321edd75fd31862f43fe77258]
Oct-22 19:10:38.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 462; name: PLOT_TRNA_ALL_PLOTS (RNAneuro255_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/203abf714923a5b1b9a041a5abb17c]
Oct-22 19:10:38.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 468; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro265_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/85/285bb46e8d4f35e654c014d61a0ff8]
Oct-22 19:10:39.657 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:39.657 [Task submitter] INFO  nextflow.Session - [07/b634a6] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro265_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:39.661 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:39.661 [Task submitter] INFO  nextflow.Session - [ed/489420] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro265_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:39.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 470; name: GENERATE_DEPTHFILE_STATS (RNAneuro265_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/b634a6ec40f27c5b2c4715cae2db37]
Oct-22 19:10:41.487 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 178; name: BAM_COLLAPSE (23); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f6/fb9d784073acec339b7e3eb92e6a43]
Oct-22 19:10:41.490 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:41.490 [Task submitter] INFO  nextflow.Session - [bc/7b6967] Submitted process > BAM_COLLAPSE (24)
Oct-22 19:10:42.510 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:42.510 [Task submitter] INFO  nextflow.Session - [21/d61bdc] Submitted process > BAM_SPLIT (23)
Oct-22 19:10:42.514 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:42.514 [Task submitter] INFO  nextflow.Session - [2a/a6aa17] Submitted process > ADD_EMPTY_COUNTS (RNAneuro213_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:42.521 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:42.521 [Task submitter] INFO  nextflow.Session - [d0/b5ed7d] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro213_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:42.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 473; name: ADD_EMPTY_COUNTS (RNAneuro213_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2a/a6aa17c398e432ee9bffa30a44dad6]
Oct-22 19:10:43.610 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 52 -- tasks to be submitted are shown below
~> TaskHandler[id: 180; name: BAM_COLLAPSE (25); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/d6307eebc5bac00757f90128e8598a]
~> TaskHandler[id: 181; name: BAM_COLLAPSE (26); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/49b240db3aa4231ac4a49bf55f8424]
~> TaskHandler[id: 182; name: BAM_COLLAPSE (27); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/a0823ef8f57224377c93977f857f0d]
~> TaskHandler[id: 183; name: BAM_COLLAPSE (28); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/dc900d7b825e9acdaa12d4d0ad62ca]
~> TaskHandler[id: 184; name: BAM_COLLAPSE (29); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/225290fe7c0e70220d22a8837fd190]
~> TaskHandler[id: 185; name: BAM_COLLAPSE (30); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/ad53b2a77474815e97bf0141fd26cb]
~> TaskHandler[id: 186; name: BAM_COLLAPSE (31); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/db8f0a32123b11b312260c56636fde]
~> TaskHandler[id: 187; name: BAM_COLLAPSE (32); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/65/2d1ac44eea28577f7fb460b7e9f764]
~> TaskHandler[id: 188; name: BAM_COLLAPSE (33); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/d9666f208517caa087e69d171e3059]
~> TaskHandler[id: 189; name: BAM_COLLAPSE (34); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/3912fcf805e3e2fed0748bf6c15af3]
.. remaining tasks omitted.
Oct-22 19:10:44.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 471; name: BAM_SPLIT (23); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/21/d61bdcd00823f01a2c81192dfb6fab]
Oct-22 19:10:45.016 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 472; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro213_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/b5ed7dc784c352d24508b90b4fcaa9]
Oct-22 19:10:45.019 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:45.020 [Task submitter] INFO  nextflow.Session - [97/e8ef01] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro213_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:45.023 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:45.023 [Task submitter] INFO  nextflow.Session - [27/2cd1ff] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro213_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:45.026 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:45.026 [Task submitter] INFO  nextflow.Session - [af/6b4b8b] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro213_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:45.029 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:45.029 [Task submitter] INFO  nextflow.Session - [6a/927283] Submitted process > FEATURE_COUNT_TRNA (RNAneuro213_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:45.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 469; name: PLOT_TRNA_ALL_PLOTS (RNAneuro265_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/489420105f7362212bd899bcfb0782]
Oct-22 19:10:45.473 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:45.474 [Task submitter] INFO  nextflow.Session - [39/fb72da] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro213_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:45.517 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 478; name: FEATURE_COUNT_TRNA (RNAneuro213_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/927283f7f46ac130768d93690be4c0]
Oct-22 19:10:45.596 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 475; name: FEATURE_COUNT_NCRNA (RNAneuro213_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/2cd1ffb0b1f5062438f7c9e5bc9b99]
Oct-22 19:10:47.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 179; name: BAM_COLLAPSE (24); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/7b69675160b6f9bf1da9941b9f84da]
Oct-22 19:10:47.128 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:47.128 [Task submitter] INFO  nextflow.Session - [6a/d6307e] Submitted process > BAM_COLLAPSE (25)
Oct-22 19:10:48.132 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:48.133 [Task submitter] INFO  nextflow.Session - [31/512ed2] Submitted process > BAM_SPLIT (24)
Oct-22 19:10:48.136 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:48.136 [Task submitter] INFO  nextflow.Session - [45/374364] Submitted process > ADD_EMPTY_COUNTS (RNAneuro234_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:48.425 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 481; name: ADD_EMPTY_COUNTS (RNAneuro234_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/374364bef55ba878116c3ea953dfc3]
Oct-22 19:10:48.429 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:48.429 [Task submitter] INFO  nextflow.Session - [95/927979] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro234_trimmed_tRNAs-almost-mapped)
Oct-22 19:10:49.358 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 477; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro213_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/97/e8ef01c35fa36a70b94d60aed8561b]
Oct-22 19:10:50.546 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 480; name: BAM_SPLIT (24); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/512ed237301d579dd988ea95f44d9b]
Oct-22 19:10:50.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 474; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro213_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/af/6b4b8beca1b7354e01eba29d97b7e8]
Oct-22 19:10:50.780 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:50.780 [Task submitter] INFO  nextflow.Session - [82/06cfe8] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro234_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:50.784 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:50.784 [Task submitter] INFO  nextflow.Session - [26/c5b032] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro234_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:50.788 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:50.788 [Task submitter] INFO  nextflow.Session - [11/49fd22] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro234_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:51.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 479; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro234_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/95/927979bacea9faf294c3a8ac580590]
Oct-22 19:10:51.640 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:51.640 [Task submitter] INFO  nextflow.Session - [3e/3377b3] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro234_trimmed_accepted_hits_ncRNAs)
Oct-22 19:10:51.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 486; name: FEATURE_COUNT_NCRNA (RNAneuro234_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3e/3377b314cb8b00501872375d025f1d]
Oct-22 19:10:51.812 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:51.812 [Task submitter] INFO  nextflow.Session - [f5/e094c1] Submitted process > FEATURE_COUNT_TRNA (RNAneuro234_trimmed_accepted_hits_tRNAs)
Oct-22 19:10:51.903 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 484; name: FEATURE_COUNT_TRNA (RNAneuro234_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/e094c17f99f5a154ab8af25043296b]
Oct-22 19:10:51.905 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:51.906 [Task submitter] INFO  nextflow.Session - [21/f50fff] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro213_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:52.173 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 488; name: GENERATE_DEPTHFILE_STATS (RNAneuro213_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/21/f50ffff263be5ec25852fbb7ef1a74]
Oct-22 19:10:52.176 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:52.176 [Task submitter] INFO  nextflow.Session - [c1/a1f789] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro213_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:54.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 445; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro235_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/80/f0b4c82766250f07b69dcc2d517c5c]
Oct-22 19:10:54.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 485; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro234_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/82/06cfe8ef9436547e4884af2e2e2397]
Oct-22 19:10:54.531 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:54.531 [Task submitter] INFO  nextflow.Session - [20/a24da3] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro235_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:10:55.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 483; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro234_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/49fd22a9ffaebd0b6702921b1c8d6c]
Oct-22 19:10:56.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 489; name: GENERATE_DEPTHFILE_STATS (RNAneuro235_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/20/a24da3c5e410afe9bdc07f0aebb6b5]
Oct-22 19:10:56.053 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:56.053 [Task submitter] INFO  nextflow.Session - [82/d00eb5] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro234_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:56.056 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:56.056 [Task submitter] INFO  nextflow.Session - [ac/cba182] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro234_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:10:56.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 491; name: GENERATE_DEPTHFILE_STATS (RNAneuro234_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ac/cba18289c89c1f458b58415c115e35]
Oct-22 19:10:56.483 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 487; name: PLOT_TRNA_ALL_PLOTS (RNAneuro213_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/a1f78919da33c089a8b99d6199486e]
Oct-22 19:10:59.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 180; name: BAM_COLLAPSE (25); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/d6307eebc5bac00757f90128e8598a]
Oct-22 19:10:59.964 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:10:59.964 [Task submitter] INFO  nextflow.Session - [9b/49b240] Submitted process > BAM_COLLAPSE (26)
Oct-22 19:11:00.967 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:00.968 [Task submitter] INFO  nextflow.Session - [54/9f9333] Submitted process > BAM_SPLIT (25)
Oct-22 19:11:00.970 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:00.970 [Task submitter] INFO  nextflow.Session - [4f/942f8e] Submitted process > ADD_EMPTY_COUNTS (RNAneuro230_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:00.972 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:00.972 [Task submitter] INFO  nextflow.Session - [93/e8cd95] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro230_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:01.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 493; name: ADD_EMPTY_COUNTS (RNAneuro230_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/942f8e67d3c45bc0907dc9fb085fee]
Oct-22 19:11:01.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 490; name: PLOT_TRNA_ALL_PLOTS (RNAneuro234_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/82/d00eb596ccc985f5a121f5e0cfb5b7]
Oct-22 19:11:02.974 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 492; name: BAM_SPLIT (25); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/9f93339a71b72a140c2106b7e4e237]
Oct-22 19:11:03.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 494; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro230_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/93/e8cd950bd2e90766c98e4cbeff2ea1]
Oct-22 19:11:03.083 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:03.083 [Task submitter] INFO  nextflow.Session - [b2/1184e9] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro230_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:03.085 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:03.085 [Task submitter] INFO  nextflow.Session - [b8/1b1597] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro230_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:03.087 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:03.087 [Task submitter] INFO  nextflow.Session - [08/faf7e7] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro230_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:03.089 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:03.089 [Task submitter] INFO  nextflow.Session - [a1/91e0bc] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro230_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:03.980 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 496; name: FEATURE_COUNT_NCRNA (RNAneuro230_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a1/91e0bcc60adb119da318146355b56d]
Oct-22 19:11:03.983 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:03.983 [Task submitter] INFO  nextflow.Session - [05/c1da16] Submitted process > FEATURE_COUNT_TRNA (RNAneuro230_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:04.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 497; name: FEATURE_COUNT_TRNA (RNAneuro230_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/05/c1da16f4efe3f7fc2fe5cf758e3a46]
Oct-22 19:11:05.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 495; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro230_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b2/1184e9025b1b2a4496595567f55ec9]
Oct-22 19:11:07.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 498; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro230_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/faf7e7bca44467cb808190b5c4384f]
Oct-22 19:11:08.468 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:08.468 [Task submitter] INFO  nextflow.Session - [75/fa7a1a] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro230_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:08.471 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:08.471 [Task submitter] INFO  nextflow.Session - [e3/801eb5] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro230_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:08.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 501; name: GENERATE_DEPTHFILE_STATS (RNAneuro230_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/75/fa7a1a9ba71042315a728b861596ef]
Oct-22 19:11:12.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 500; name: PLOT_TRNA_ALL_PLOTS (RNAneuro230_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/801eb5616b9e7f243e4069e58bea3f]
Oct-22 19:11:16.422 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 181; name: BAM_COLLAPSE (26); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/49b240db3aa4231ac4a49bf55f8424]
Oct-22 19:11:16.425 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:16.425 [Task submitter] INFO  nextflow.Session - [fc/a0823e] Submitted process > BAM_COLLAPSE (27)
Oct-22 19:11:17.794 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:17.795 [Task submitter] INFO  nextflow.Session - [ee/885e04] Submitted process > BAM_SPLIT (26)
Oct-22 19:11:17.797 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:17.797 [Task submitter] INFO  nextflow.Session - [09/2fe3ea] Submitted process > ADD_EMPTY_COUNTS (RNAneuro244_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:17.800 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:17.800 [Task submitter] INFO  nextflow.Session - [08/43b43a] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro244_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:17.894 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 504; name: ADD_EMPTY_COUNTS (RNAneuro244_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/09/2fe3eab9e29519d9dfbc5f67711087]
Oct-22 19:11:19.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 455; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro255_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/99e3acd56cf0ca4f705a4b82f2feec]
Oct-22 19:11:19.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 502; name: BAM_SPLIT (26); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/885e04a26ad009f757193c1b54bcd7]
Oct-22 19:11:19.801 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:19.802 [Task submitter] INFO  nextflow.Session - [ad/1b0ec1] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro255_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:11:20.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 503; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro244_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/43b43a27aa99b1aa7bbd4541b7cb26]
Oct-22 19:11:20.011 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:20.011 [Task submitter] INFO  nextflow.Session - [fd/e94a67] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro244_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:20.013 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:20.013 [Task submitter] INFO  nextflow.Session - [fe/ed9859] Submitted process > FEATURE_COUNT_TRNA (RNAneuro244_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:20.015 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:20.016 [Task submitter] INFO  nextflow.Session - [69/333482] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro244_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:20.671 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 509; name: FEATURE_COUNT_TRNA (RNAneuro244_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/ed985967157510ebc7b1a7f747ce0b]
Oct-22 19:11:20.673 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:20.673 [Task submitter] INFO  nextflow.Session - [24/1ec0dc] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro244_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:20.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 507; name: FEATURE_COUNT_NCRNA (RNAneuro244_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/333482973ed2e5ee05ef506e7606ca]
Oct-22 19:11:20.750 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:20.750 [Task submitter] INFO  nextflow.Session - [7f/fc3c83] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro244_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:21.765 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 505; name: GENERATE_DEPTHFILE_STATS (RNAneuro255_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ad/1b0ec144e1e436e011594838c02a75]
Oct-22 19:11:23.481 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 464; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro265_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/eed5db99c6d00952d8b3bb385128ca]
Oct-22 19:11:23.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 506; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro244_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/e94a677c36fd4baf2cc2df18083e0b]
Oct-22 19:11:23.646 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:23.646 [Task submitter] INFO  nextflow.Session - [f9/c10530] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro265_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:11:24.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 510; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro244_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/fc3c834243d0fcf0bc34e4f5507751]
Oct-22 19:11:25.121 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 511; name: GENERATE_DEPTHFILE_STATS (RNAneuro265_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/c10530b4d34150751675d51b561f5a]
Oct-22 19:11:25.123 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:25.123 [Task submitter] INFO  nextflow.Session - [09/f8dc50] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro244_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:25.126 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:25.126 [Task submitter] INFO  nextflow.Session - [0a/60a550] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro244_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:25.403 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 513; name: GENERATE_DEPTHFILE_STATS (RNAneuro244_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/09/f8dc50dbc75a7d0f9ab23bbb500916]
Oct-22 19:11:28.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 182; name: BAM_COLLAPSE (27); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/a0823ef8f57224377c93977f857f0d]
Oct-22 19:11:28.786 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:28.787 [Task submitter] INFO  nextflow.Session - [69/dc900d] Submitted process > BAM_COLLAPSE (28)
Oct-22 19:11:30.104 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:30.104 [Task submitter] INFO  nextflow.Session - [d9/b397fa] Submitted process > ADD_EMPTY_COUNTS (RNAneuro233_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:30.107 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:30.107 [Task submitter] INFO  nextflow.Session - [e5/924cca] Submitted process > BAM_SPLIT (27)
Oct-22 19:11:30.109 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:30.109 [Task submitter] INFO  nextflow.Session - [a6/9044d6] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro233_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:30.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 514; name: ADD_EMPTY_COUNTS (RNAneuro233_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/b397fa8508be18a8562984d241821f]
Oct-22 19:11:30.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 512; name: PLOT_TRNA_ALL_PLOTS (RNAneuro244_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/60a5503f9dfc496022925e11e0c7cd]
Oct-22 19:11:31.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 516; name: BAM_SPLIT (27); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/924cca2ccfead36b59ef83fceae412]
Oct-22 19:11:32.084 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 515; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro233_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/9044d6112abc70bbd4faf76a0cacf1]
Oct-22 19:11:32.086 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:32.086 [Task submitter] INFO  nextflow.Session - [fc/74027d] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro233_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:32.088 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:32.088 [Task submitter] INFO  nextflow.Session - [fc/f1dc5c] Submitted process > FEATURE_COUNT_TRNA (RNAneuro233_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:32.090 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:32.090 [Task submitter] INFO  nextflow.Session - [ba/56812a] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro233_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:32.092 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:32.092 [Task submitter] INFO  nextflow.Session - [70/192a1b] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro233_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:32.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 518; name: FEATURE_COUNT_TRNA (RNAneuro233_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/f1dc5c48d3502dfb21e2bc4c391468]
Oct-22 19:11:32.970 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:32.970 [Task submitter] INFO  nextflow.Session - [f4/f06d99] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro233_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:33.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 519; name: FEATURE_COUNT_NCRNA (RNAneuro233_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/56812a403ff709d579eb55924e129a]
Oct-22 19:11:35.339 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 476; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro213_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/39/fb72da735e4cd09333ac9cb086edef]
Oct-22 19:11:36.343 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:36.343 [Task submitter] INFO  nextflow.Session - [1c/d39093] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro213_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:11:36.544 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 521; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro233_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/74027d1200a4c9115f4a904e73de90]
Oct-22 19:11:36.744 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 517; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro233_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f4/f06d994fed0baded01eddfc77d3e9d]
Oct-22 19:11:37.748 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:37.748 [Task submitter] INFO  nextflow.Session - [ce/851e55] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro233_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:37.751 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:37.751 [Task submitter] INFO  nextflow.Session - [dd/4821c6] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro233_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:37.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 522; name: GENERATE_DEPTHFILE_STATS (RNAneuro213_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1c/d3909356b4a3aaac17813b54c53fd0]
Oct-22 19:11:38.051 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 524; name: GENERATE_DEPTHFILE_STATS (RNAneuro233_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/851e55251d424b79245c35adc22598]
Oct-22 19:11:39.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 482; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro234_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/c5b032530435629afbb45a3ce88c39]
Oct-22 19:11:40.472 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:40.472 [Task submitter] INFO  nextflow.Session - [ef/1cbfd2] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro234_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:11:41.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 523; name: PLOT_TRNA_ALL_PLOTS (RNAneuro233_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dd/4821c677a4ed5e19fcc80fa6bf36a3]
Oct-22 19:11:41.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 525; name: GENERATE_DEPTHFILE_STATS (RNAneuro234_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ef/1cbfd2807e2c64933e9dd4be358dbf]
Oct-22 19:11:43.997 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 183; name: BAM_COLLAPSE (28); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/dc900d7b825e9acdaa12d4d0ad62ca]
Oct-22 19:11:43.999 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:44.000 [Task submitter] INFO  nextflow.Session - [b6/225290] Submitted process > BAM_COLLAPSE (29)
Oct-22 19:11:45.004 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:45.004 [Task submitter] INFO  nextflow.Session - [b9/186077] Submitted process > BAM_SPLIT (28)
Oct-22 19:11:45.007 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:45.007 [Task submitter] INFO  nextflow.Session - [7e/c6daf8] Submitted process > ADD_EMPTY_COUNTS (RNAneuro239_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:45.011 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:45.011 [Task submitter] INFO  nextflow.Session - [a7/0c0774] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro239_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:45.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 528; name: ADD_EMPTY_COUNTS (RNAneuro239_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/c6daf8420917f857ac8e3dc2805887]
Oct-22 19:11:47.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 526; name: BAM_SPLIT (28); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b9/1860777264f790deb8deae2a6e2a40]
Oct-22 19:11:47.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 527; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro239_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/0c077436c21d0b1f824c98ec78923d]
Oct-22 19:11:47.219 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:47.219 [Task submitter] INFO  nextflow.Session - [97/e97561] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro239_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:47.222 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:47.222 [Task submitter] INFO  nextflow.Session - [80/6d2a34] Submitted process > FEATURE_COUNT_TRNA (RNAneuro239_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:47.225 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:47.225 [Task submitter] INFO  nextflow.Session - [9d/ddd17c] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro239_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:47.228 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:47.228 [Task submitter] INFO  nextflow.Session - [55/95c1ad] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro239_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:47.230 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:47.231 [Task submitter] INFO  nextflow.Session - [42/e2b648] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro239_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:47.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 533; name: FEATURE_COUNT_TRNA (RNAneuro239_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/80/6d2a34fc2687f9710e6db7d9d9adef]
Oct-22 19:11:47.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 532; name: FEATURE_COUNT_NCRNA (RNAneuro239_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/ddd17cab46367884131e22fecf39b0]
Oct-22 19:11:50.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 529; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro239_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/97/e9756158ce46d74258c1a985a0d7f3]
Oct-22 19:11:51.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 531; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro239_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/95c1ad3a507287e79ccd83e1f7a924]
Oct-22 19:11:51.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 499; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro230_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/1b1597f747279501960e235df21f21]
Oct-22 19:11:51.295 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:51.296 [Task submitter] INFO  nextflow.Session - [37/97ad2c] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro239_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:51.299 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:51.299 [Task submitter] INFO  nextflow.Session - [3a/05a68d] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro239_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:11:51.302 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:51.302 [Task submitter] INFO  nextflow.Session - [89/d77457] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro230_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:11:51.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 534; name: GENERATE_DEPTHFILE_STATS (RNAneuro239_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/37/97ad2ce18d063bfc0d338c5ab4b874]
Oct-22 19:11:52.775 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 536; name: GENERATE_DEPTHFILE_STATS (RNAneuro230_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/89/d77457baca6496aa83748913d6b145]
Oct-22 19:11:56.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 184; name: BAM_COLLAPSE (29); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/225290fe7c0e70220d22a8837fd190]
Oct-22 19:11:56.076 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:56.076 [Task submitter] INFO  nextflow.Session - [36/ad53b2] Submitted process > BAM_COLLAPSE (30)
Oct-22 19:11:56.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 535; name: PLOT_TRNA_ALL_PLOTS (RNAneuro239_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/05a68d38def78fab9c812264df5144]
Oct-22 19:11:56.305 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:56.305 [Task submitter] INFO  nextflow.Session - [33/9e77d5] Submitted process > BAM_SPLIT (29)
Oct-22 19:11:56.308 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:56.309 [Task submitter] INFO  nextflow.Session - [4b/335e66] Submitted process > ADD_EMPTY_COUNTS (RNAneuro227_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:56.312 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:56.312 [Task submitter] INFO  nextflow.Session - [bc/d2ff1c] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro227_trimmed_tRNAs-almost-mapped)
Oct-22 19:11:56.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 537; name: ADD_EMPTY_COUNTS (RNAneuro227_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/335e669b32fdedcef38b31bb5005a2]
Oct-22 19:11:58.122 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 538; name: BAM_SPLIT (29); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/9e77d5f87f59b5f6d97f5459d848ed]
Oct-22 19:11:58.306 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 539; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro227_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/d2ff1c2a55415dc4f641db155a1aae]
Oct-22 19:11:58.309 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:58.309 [Task submitter] INFO  nextflow.Session - [7b/8c1403] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro227_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:58.312 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:58.312 [Task submitter] INFO  nextflow.Session - [6f/ff64e6] Submitted process > FEATURE_COUNT_TRNA (RNAneuro227_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:58.315 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:58.315 [Task submitter] INFO  nextflow.Session - [04/04f992] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro227_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:58.318 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:58.318 [Task submitter] INFO  nextflow.Session - [a7/bc30cb] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro227_trimmed_accepted_hits_ncRNAs)
Oct-22 19:11:58.322 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:11:58.322 [Task submitter] INFO  nextflow.Session - [64/6c24d6] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro227_trimmed_accepted_hits_tRNAs)
Oct-22 19:11:59.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 541; name: FEATURE_COUNT_TRNA (RNAneuro227_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/ff64e6d0a24f29b2a3d7d1d38241c4]
Oct-22 19:11:59.446 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 542; name: FEATURE_COUNT_NCRNA (RNAneuro227_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/bc30cb43b96cbb122faa3231e81e50]
Oct-22 19:12:02.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 540; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro227_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7b/8c14039e2958857094d4cfbff02311]
Oct-22 19:12:02.934 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 543; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro227_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/6c24d66bd7501c53cae1537cbc1f10]
Oct-22 19:12:03.938 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:03.938 [Task submitter] INFO  nextflow.Session - [25/e09866] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro227_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:12:03.942 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:03.942 [Task submitter] INFO  nextflow.Session - [c8/4e2b2f] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro227_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:12:04.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 546; name: GENERATE_DEPTHFILE_STATS (RNAneuro227_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/25/e098660b3a93b5b9b3678614fbb9f8]
Oct-22 19:12:07.905 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 545; name: PLOT_TRNA_ALL_PLOTS (RNAneuro227_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/4e2b2f90e5fd9e2232634db65d5aa6]
Oct-22 19:12:07.986 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 508; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro244_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/1ec0dc7be87cf87978b8065769f003]
Oct-22 19:12:08.990 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:08.990 [Task submitter] INFO  nextflow.Session - [61/4de757] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro244_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:12:10.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 547; name: GENERATE_DEPTHFILE_STATS (RNAneuro244_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/4de75717cf737f5935ba53523d700d]
Oct-22 19:12:19.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 520; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro233_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/192a1baf97d2cc5dbb93c0502b4f21]
Oct-22 19:12:20.786 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:20.786 [Task submitter] INFO  nextflow.Session - [45/e35ea4] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro233_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:12:22.187 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 548; name: GENERATE_DEPTHFILE_STATS (RNAneuro233_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/e35ea4b354b09b63e6d200a3e3025e]
Oct-22 19:12:31.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 185; name: BAM_COLLAPSE (30); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/ad53b2a77474815e97bf0141fd26cb]
Oct-22 19:12:31.572 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:31.572 [Task submitter] INFO  nextflow.Session - [ba/db8f0a] Submitted process > BAM_COLLAPSE (31)
Oct-22 19:12:32.827 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:32.828 [Task submitter] INFO  nextflow.Session - [c6/2bb787] Submitted process > BAM_SPLIT (30)
Oct-22 19:12:32.831 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:32.831 [Task submitter] INFO  nextflow.Session - [7b/bf56be] Submitted process > ADD_EMPTY_COUNTS (RNAneuro218_trimmed_tRNAs-almost-mapped)
Oct-22 19:12:32.834 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:32.834 [Task submitter] INFO  nextflow.Session - [01/44cf4a] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro218_trimmed_tRNAs-almost-mapped)
Oct-22 19:12:32.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 549; name: ADD_EMPTY_COUNTS (RNAneuro218_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7b/bf56bed548cdeae19e0beb19c579ab]
Oct-22 19:12:34.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 550; name: BAM_SPLIT (30); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c6/2bb7879d963dee319506c62218a7ba]
Oct-22 19:12:35.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 551; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro218_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/44cf4a681a58b151fa89e60ea6e342]
Oct-22 19:12:35.023 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:35.023 [Task submitter] INFO  nextflow.Session - [98/36ff59] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro218_trimmed_accepted_hits_tRNAs)
Oct-22 19:12:35.027 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:35.027 [Task submitter] INFO  nextflow.Session - [e3/339882] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro218_trimmed_accepted_hits_ncRNAs)
Oct-22 19:12:35.032 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:35.032 [Task submitter] INFO  nextflow.Session - [da/127ba8] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro218_trimmed_accepted_hits_ncRNAs)
Oct-22 19:12:35.036 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:35.036 [Task submitter] INFO  nextflow.Session - [71/66118b] Submitted process > FEATURE_COUNT_TRNA (RNAneuro218_trimmed_accepted_hits_tRNAs)
Oct-22 19:12:35.040 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:35.040 [Task submitter] INFO  nextflow.Session - [5b/7b3788] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro218_trimmed_accepted_hits_tRNAs)
Oct-22 19:12:35.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 555; name: FEATURE_COUNT_TRNA (RNAneuro218_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/66118b607dd5979a465af8fa2f1f82]
Oct-22 19:12:35.386 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 553; name: FEATURE_COUNT_NCRNA (RNAneuro218_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/3398820fe183cdaf7c6b60ba9bb998]
Oct-22 19:12:36.195 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 530; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro239_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/42/e2b648b58053c645e24621bedb7c84]
Oct-22 19:12:37.198 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:37.199 [Task submitter] INFO  nextflow.Session - [eb/0111b0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro239_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:12:38.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 186; name: BAM_COLLAPSE (31); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/db8f0a32123b11b312260c56636fde]
Oct-22 19:12:38.129 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:38.129 [Task submitter] INFO  nextflow.Session - [65/2d1ac4] Submitted process > BAM_COLLAPSE (32)
Oct-22 19:12:38.714 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 552; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro218_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/36ff59ce65cc8f5b09a69d6530af76]
Oct-22 19:12:38.718 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:38.718 [Task submitter] INFO  nextflow.Session - [d1/ab31ed] Submitted process > BAM_SPLIT (31)
Oct-22 19:12:38.722 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:38.722 [Task submitter] INFO  nextflow.Session - [ed/734aef] Submitted process > ADD_EMPTY_COUNTS (RNAneuro256_trimmed_tRNAs-almost-mapped)
Oct-22 19:12:38.725 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:38.725 [Task submitter] INFO  nextflow.Session - [2f/9914ea] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro256_trimmed_tRNAs-almost-mapped)
Oct-22 19:12:38.808 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 559; name: ADD_EMPTY_COUNTS (RNAneuro256_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/734aef477607e0f10c68f69b790c0d]
Oct-22 19:12:38.964 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 557; name: GENERATE_DEPTHFILE_STATS (RNAneuro239_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/eb/0111b02687a5d6578dc774e724858a]
Oct-22 19:12:39.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 556; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro218_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/7b37886f2ecbbca996dbe9b8c4bdb4]
Oct-22 19:12:40.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 558; name: BAM_SPLIT (31); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d1/ab31eddbc48786a7c44048a85cf54f]
Oct-22 19:12:40.573 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.573 [Task submitter] INFO  nextflow.Session - [4f/80d36e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro218_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:12:40.576 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.576 [Task submitter] INFO  nextflow.Session - [78/3a8e06] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro218_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:12:40.863 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 562; name: GENERATE_DEPTHFILE_STATS (RNAneuro218_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/80d36e0a74d5dfa58f5d00ee76c8fc]
Oct-22 19:12:40.865 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.865 [Task submitter] INFO  nextflow.Session - [f6/63f36f] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro256_trimmed_accepted_hits_tRNAs)
Oct-22 19:12:40.868 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.868 [Task submitter] INFO  nextflow.Session - [d9/f1c106] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro256_trimmed_accepted_hits_ncRNAs)
Oct-22 19:12:40.871 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.871 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 560; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro256_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2f/9914ea3f1dd1e3afaa261d491bb2d7]
Oct-22 19:12:40.871 [Task submitter] INFO  nextflow.Session - [f7/2b08c2] Submitted process > FEATURE_COUNT_TRNA (RNAneuro256_trimmed_accepted_hits_tRNAs)
Oct-22 19:12:40.874 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.874 [Task submitter] INFO  nextflow.Session - [66/4cd001] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro256_trimmed_accepted_hits_ncRNAs)
Oct-22 19:12:40.877 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:40.877 [Task submitter] INFO  nextflow.Session - [22/aee1b1] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro256_trimmed_accepted_hits_tRNAs)
Oct-22 19:12:41.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 565; name: FEATURE_COUNT_TRNA (RNAneuro256_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/2b08c28a82111361da4859bd0c549c]
Oct-22 19:12:41.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 563; name: FEATURE_COUNT_NCRNA (RNAneuro256_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/f1c106525eff75c6c04105282cdea5]
Oct-22 19:12:45.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 564; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro256_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f6/63f36f57392cfe3cfc9c6b3e86afb4]
Oct-22 19:12:45.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 567; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro256_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/aee1b13fd55170291e450e009751b7]
Oct-22 19:12:45.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 544; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro227_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/04f992e3556967caaf0ca88e7d81c4]
Oct-22 19:12:45.843 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:45.843 [Task submitter] INFO  nextflow.Session - [c4/6d42ae] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro256_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:12:45.845 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:45.846 [Task submitter] INFO  nextflow.Session - [0a/8dc7d9] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro256_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:12:45.848 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:45.849 [Task submitter] INFO  nextflow.Session - [10/6043a7] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro227_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:12:46.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 561; name: PLOT_TRNA_ALL_PLOTS (RNAneuro218_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/78/3a8e06a6b29d319f048d709a9dad6d]
Oct-22 19:12:46.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 569; name: GENERATE_DEPTHFILE_STATS (RNAneuro256_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c4/6d42aeac31f57a8f30322ecce7d878]
Oct-22 19:12:47.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 570; name: GENERATE_DEPTHFILE_STATS (RNAneuro227_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/6043a7628fdf02b0827be4214b0eb0]
Oct-22 19:12:49.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 568; name: PLOT_TRNA_ALL_PLOTS (RNAneuro256_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/8dc7d967b8de468a7fcde4f2664d80]
Oct-22 19:12:58.357 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 187; name: BAM_COLLAPSE (32); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/65/2d1ac44eea28577f7fb460b7e9f764]
Oct-22 19:12:58.360 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:58.360 [Task submitter] INFO  nextflow.Session - [fd/d9666f] Submitted process > BAM_COLLAPSE (33)
Oct-22 19:12:59.364 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:59.365 [Task submitter] INFO  nextflow.Session - [84/40e667] Submitted process > BAM_SPLIT (32)
Oct-22 19:12:59.368 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:59.368 [Task submitter] INFO  nextflow.Session - [2e/f4c140] Submitted process > ADD_EMPTY_COUNTS (RNAneuro242_trimmed_tRNAs-almost-mapped)
Oct-22 19:12:59.371 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:12:59.371 [Task submitter] INFO  nextflow.Session - [a9/cc00d2] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro242_trimmed_tRNAs-almost-mapped)
Oct-22 19:12:59.629 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 573; name: ADD_EMPTY_COUNTS (RNAneuro242_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/f4c14037d80ad7e4c3b7868ad87545]
Oct-22 19:13:02.233 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 572; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro242_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a9/cc00d23c07ed37c8febbdac1ecec58]
Oct-22 19:13:02.739 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 571; name: BAM_SPLIT (32); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/40e6673c82a655d3e6b66779aa322d]
Oct-22 19:13:03.743 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:03.743 [Task submitter] INFO  nextflow.Session - [64/f9b3a9] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro242_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:03.746 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:03.746 [Task submitter] INFO  nextflow.Session - [73/670e16] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro242_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:03.749 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:03.749 [Task submitter] INFO  nextflow.Session - [78/56514d] Submitted process > FEATURE_COUNT_TRNA (RNAneuro242_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:03.752 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:03.752 [Task submitter] INFO  nextflow.Session - [29/19a7a8] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro242_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:03.756 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:03.756 [Task submitter] INFO  nextflow.Session - [e2/201521] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro242_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:04.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 577; name: FEATURE_COUNT_TRNA (RNAneuro242_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/78/56514ded5c27197698c7e3c6eeb0a9]
Oct-22 19:13:04.221 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 574; name: FEATURE_COUNT_NCRNA (RNAneuro242_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/29/19a7a83dc36d64257441db609673b7]
Oct-22 19:13:05.356 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 188; name: BAM_COLLAPSE (33); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/d9666f208517caa087e69d171e3059]
Oct-22 19:13:05.360 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:05.361 [Task submitter] INFO  nextflow.Session - [e5/3912fc] Submitted process > BAM_COLLAPSE (34)
Oct-22 19:13:06.365 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:06.366 [Task submitter] INFO  nextflow.Session - [f2/b2d4ab] Submitted process > BAM_SPLIT (33)
Oct-22 19:13:06.370 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:06.370 [Task submitter] INFO  nextflow.Session - [d3/46e6b0] Submitted process > ADD_EMPTY_COUNTS (RNAneuro264_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:06.373 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:06.374 [Task submitter] INFO  nextflow.Session - [b1/a8d204] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro264_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:06.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 581; name: ADD_EMPTY_COUNTS (RNAneuro264_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/46e6b04f33a61798330ee8d7f71c4a]
Oct-22 19:13:07.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 578; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro242_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/f9b3a97aa00e38baae1fc0590b7a84]
Oct-22 19:13:08.441 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 579; name: BAM_SPLIT (33); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/b2d4ab67db0c796ac262365a8402c5]
Oct-22 19:13:08.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 580; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro264_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/a8d204a7a707a7bc238a295c0093ee]
Oct-22 19:13:08.555 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:08.555 [Task submitter] INFO  nextflow.Session - [ad/5c0be6] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro264_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:08.557 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:08.557 [Task submitter] INFO  nextflow.Session - [2d/6a62f4] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro264_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:08.559 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:08.560 [Task submitter] INFO  nextflow.Session - [5f/e91a93] Submitted process > FEATURE_COUNT_TRNA (RNAneuro264_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:08.562 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:08.562 [Task submitter] INFO  nextflow.Session - [d8/43fbe9] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro264_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:08.960 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 586; name: FEATURE_COUNT_TRNA (RNAneuro264_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5f/e91a93a73bb9ac56619b3ee3953bb7]
Oct-22 19:13:08.962 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:08.962 [Task submitter] INFO  nextflow.Session - [5b/4fbee2] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro264_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:09.014 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 575; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro242_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/2015219b09239d4a62b48b474e83d1]
Oct-22 19:13:09.036 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 584; name: FEATURE_COUNT_NCRNA (RNAneuro264_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/43fbe992ffb3c34b0b4d61561148c4]
Oct-22 19:13:09.038 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:09.038 [Task submitter] INFO  nextflow.Session - [ce/ab5460] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro242_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:09.040 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:09.040 [Task submitter] INFO  nextflow.Session - [10/9012b9] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro242_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:09.328 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 587; name: GENERATE_DEPTHFILE_STATS (RNAneuro242_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/9012b9cfc863755b11a5e05d31232c]
Oct-22 19:13:12.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 585; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro264_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ad/5c0be68da2d9e1e4abf020a387f8da]
Oct-22 19:13:13.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 583; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro264_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/4fbee2056a9904c101a9c6e4e20b2c]
Oct-22 19:13:13.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 588; name: PLOT_TRNA_ALL_PLOTS (RNAneuro242_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ce/ab5460ae6679b09d99b148963a3d3b]
Oct-22 19:13:13.515 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:13.515 [Task submitter] INFO  nextflow.Session - [10/95500e] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro264_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:13.517 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:13.518 [Task submitter] INFO  nextflow.Session - [7d/8379cc] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro264_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:13.815 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 590; name: GENERATE_DEPTHFILE_STATS (RNAneuro264_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/8379cc22d6cfc4e79ebebcb7ab838c]
Oct-22 19:13:17.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 589; name: PLOT_TRNA_ALL_PLOTS (RNAneuro264_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/95500e72c43115e14134b696f5fc5f]
Oct-22 19:13:23.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 554; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro218_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/127ba8c5f490b5ee38d679456b294a]
Oct-22 19:13:24.348 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:24.348 [Task submitter] INFO  nextflow.Session - [9f/65a984] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro218_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:13:27.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 189; name: BAM_COLLAPSE (34); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/3912fcf805e3e2fed0748bf6c15af3]
Oct-22 19:13:27.103 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:27.103 [Task submitter] INFO  nextflow.Session - [b3/0e51b2] Submitted process > BAM_COLLAPSE (35)
Oct-22 19:13:27.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 591; name: GENERATE_DEPTHFILE_STATS (RNAneuro218_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/65a9844cb3c2778180f3de28c0d3a0]
Oct-22 19:13:27.890 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:27.890 [Task submitter] INFO  nextflow.Session - [06/4a7238] Submitted process > BAM_SPLIT (34)
Oct-22 19:13:27.893 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:27.893 [Task submitter] INFO  nextflow.Session - [b2/6e09d6] Submitted process > ADD_EMPTY_COUNTS (RNAneuro245_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:27.895 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:27.895 [Task submitter] INFO  nextflow.Session - [ee/a3acca] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro245_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:28.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 594; name: ADD_EMPTY_COUNTS (RNAneuro245_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b2/6e09d606ce006d39f7606c3eefd88c]
Oct-22 19:13:30.284 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 593; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro245_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/a3acca6e5a93c12e2d118ec4b2f07b]
Oct-22 19:13:31.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 592; name: BAM_SPLIT (34); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/06/4a723829931983d548c40bbbf9bcad]
Oct-22 19:13:31.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 566; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro256_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/4cd00151d260c95b6d96eb088479c9]
Oct-22 19:13:31.889 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:31.889 [Task submitter] INFO  nextflow.Session - [35/55c89e] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro245_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:31.892 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:31.892 [Task submitter] INFO  nextflow.Session - [2e/556762] Submitted process > FEATURE_COUNT_TRNA (RNAneuro245_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:31.895 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:31.895 [Task submitter] INFO  nextflow.Session - [6e/e93cc2] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro245_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:31.897 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:31.897 [Task submitter] INFO  nextflow.Session - [b9/80295b] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro245_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:31.900 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:31.900 [Task submitter] INFO  nextflow.Session - [b6/72b310] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro245_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:32.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 598; name: FEATURE_COUNT_TRNA (RNAneuro245_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/556762fd44ab9dc5c897865a89a83b]
Oct-22 19:13:32.333 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:32.333 [Task submitter] INFO  nextflow.Session - [1e/1069a1] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro256_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:13:32.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 597; name: FEATURE_COUNT_NCRNA (RNAneuro245_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b9/80295ba2d806ba46a4746e1bf9bb96]
Oct-22 19:13:33.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 600; name: GENERATE_DEPTHFILE_STATS (RNAneuro256_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/1069a1aabe9579669bfb615861e6d6]
Oct-22 19:13:34.433 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 190; name: BAM_COLLAPSE (35); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b3/0e51b2c51cf47f010d31d6d9aa1338]
Oct-22 19:13:34.435 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:34.435 [Task submitter] INFO  nextflow.Session - [bf/83d406] Submitted process > BAM_COLLAPSE (36)
Oct-22 19:13:35.438 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:35.438 [Task submitter] INFO  nextflow.Session - [02/363a0c] Submitted process > BAM_SPLIT (35)
Oct-22 19:13:35.440 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:35.440 [Task submitter] INFO  nextflow.Session - [c1/5fb0c9] Submitted process > ADD_EMPTY_COUNTS (RNAneuro243_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:35.443 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:35.443 [Task submitter] INFO  nextflow.Session - [d5/910680] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro243_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:35.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 603; name: ADD_EMPTY_COUNTS (RNAneuro243_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/5fb0c96364f52512f97dce41c52afa]
Oct-22 19:13:36.739 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 596; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro245_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/55c89edc44851bfa57dc622369e327]
Oct-22 19:13:36.763 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 599; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro245_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/72b310a77f8cbe5a4f9c7479ab6b52]
Oct-22 19:13:37.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 602; name: BAM_SPLIT (35); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/02/363a0cf1f2b31fda10c41124fff01e]
Oct-22 19:13:37.167 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.167 [Task submitter] INFO  nextflow.Session - [b7/29c3f7] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro245_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:37.170 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.171 [Task submitter] INFO  nextflow.Session - [98/e7dba3] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro245_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:37.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 191; name: BAM_COLLAPSE (36); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/83d4063309ef0dafe8771aa6a4774c]
Oct-22 19:13:37.547 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.548 [Task submitter] INFO  nextflow.Session - [3a/b6486a] Submitted process > BAM_COLLAPSE (37)
Oct-22 19:13:37.551 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.551 [Task submitter] INFO  nextflow.Session - [fc/7a1fa6] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro243_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:37.557 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.557 [Task submitter] INFO  nextflow.Session - [90/689c27] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro243_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:37.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 604; name: GENERATE_DEPTHFILE_STATS (RNAneuro245_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/29c3f7a0650754ea3b736ac3eb6abc]
Oct-22 19:13:37.774 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.775 [Task submitter] INFO  nextflow.Session - [d9/8ac54a] Submitted process > FEATURE_COUNT_TRNA (RNAneuro243_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:37.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 601; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro243_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d5/910680bce2d329ab2ca36f81b437b6]
Oct-22 19:13:37.966 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.966 [Task submitter] INFO  nextflow.Session - [a2/e0b2e9] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro243_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:37.989 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 608; name: FEATURE_COUNT_TRNA (RNAneuro243_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/8ac54acd1d856929437977c3a7c3d2]
Oct-22 19:13:37.991 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:37.992 [Task submitter] INFO  nextflow.Session - [cb/0181a8] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro243_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:38.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 606; name: FEATURE_COUNT_NCRNA (RNAneuro243_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/689c27ca3fddc36848ded9038911f2]
Oct-22 19:13:38.021 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:38.022 [Task submitter] INFO  nextflow.Session - [a0/5f5a68] Submitted process > BAM_SPLIT (36)
Oct-22 19:13:40.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 611; name: BAM_SPLIT (36); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a0/5f5a684375d44d4ebc366982f7b618]
Oct-22 19:13:40.268 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:40.268 [Task submitter] INFO  nextflow.Session - [92/5c91b3] Submitted process > ADD_EMPTY_COUNTS (RNAneuro249_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:40.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 612; name: ADD_EMPTY_COUNTS (RNAneuro249_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/5c91b342a18692896fbd04fd69c7bc]
Oct-22 19:13:40.368 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:40.368 [Task submitter] INFO  nextflow.Session - [e5/502672] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro249_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:41.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 613; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro249_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/502672c306652e0d5948fcd1271af0]
Oct-22 19:13:41.821 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:41.821 [Task submitter] INFO  nextflow.Session - [69/1a3154] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro249_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:42.445 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 609; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro243_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/7a1fa6a428c51ca62351a2cd3ec45d]
Oct-22 19:13:42.448 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:42.449 [Task submitter] INFO  nextflow.Session - [3a/f82c31] Submitted process > FEATURE_COUNT_TRNA (RNAneuro249_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:42.530 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 615; name: FEATURE_COUNT_TRNA (RNAneuro249_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/f82c31cb5cff22c2e4d6797c40325d]
Oct-22 19:13:42.533 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:42.534 [Task submitter] INFO  nextflow.Session - [02/c23c02] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro249_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:42.707 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 614; name: FEATURE_COUNT_NCRNA (RNAneuro249_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/02/c23c028bde609ec7901364f1d7f9ca]
Oct-22 19:13:42.710 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:42.711 [Task submitter] INFO  nextflow.Session - [3f/635f42] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro249_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:42.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 610; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro243_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/0181a84346e6d0e697f8f4a636185f]
Oct-22 19:13:42.802 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:42.803 [Task submitter] INFO  nextflow.Session - [ec/f0b006] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro249_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:43.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 605; name: PLOT_TRNA_ALL_PLOTS (RNAneuro245_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/e7dba3302d8f635b66a256a5b37779]
Oct-22 19:13:43.216 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:43.216 [Task submitter] INFO  nextflow.Session - [8d/218a97] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro243_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:43.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 620; name: GENERATE_DEPTHFILE_STATS (RNAneuro243_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/218a9765543319d9f60d951624a1bc]
Oct-22 19:13:43.510 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:43.511 [Task submitter] INFO  nextflow.Session - [a4/17e1bc] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro243_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:44.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 192; name: BAM_COLLAPSE (37); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/b6486a81b4d53c5ea48e945dce7a5f]
Oct-22 19:13:44.892 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:44.892 [Task submitter] INFO  nextflow.Session - [e4/9e7c75] Submitted process > BAM_COLLAPSE (38)
Oct-22 19:13:44.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 618; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro249_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/1a3154a2f9a8f2bb444acf1965d3b4]
Oct-22 19:13:44.912 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:44.913 [Task submitter] INFO  nextflow.Session - [c7/354af5] Submitted process > BAM_SPLIT (37)
Oct-22 19:13:46.738 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 623; name: BAM_SPLIT (37); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c7/354af5d61c45c021fe79bf2606b40f]
Oct-22 19:13:46.742 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:46.742 [Task submitter] INFO  nextflow.Session - [bb/e6c0e3] Submitted process > ADD_EMPTY_COUNTS (RNAneuro250_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:46.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 622; name: ADD_EMPTY_COUNTS (RNAneuro250_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/e6c0e35ca7352a8a7b49b6f1a498cf]
Oct-22 19:13:46.833 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:46.834 [Task submitter] INFO  nextflow.Session - [6c/9fd213] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro250_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:47.014 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 617; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro249_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ec/f0b0067d30f1a2355049541b27a2e4]
Oct-22 19:13:47.016 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:47.017 [Task submitter] INFO  nextflow.Session - [eb/e7c6bf] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro250_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:48.306 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 619; name: PLOT_TRNA_ALL_PLOTS (RNAneuro243_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/17e1bc898b68c16c78847196e79a31]
Oct-22 19:13:48.309 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:48.309 [Task submitter] INFO  nextflow.Session - [d2/70e4bc] Submitted process > FEATURE_COUNT_TRNA (RNAneuro250_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:48.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 625; name: FEATURE_COUNT_TRNA (RNAneuro250_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d2/70e4bc58b83b1bd4c8f28969573de4]
Oct-22 19:13:48.410 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:48.411 [Task submitter] INFO  nextflow.Session - [08/1f7081] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro250_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:48.599 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 621; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro250_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6c/9fd2137cb6bed6f1212b46e2076206]
Oct-22 19:13:48.601 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:48.602 [Task submitter] INFO  nextflow.Session - [f4/6ebad7] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro250_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:51.037 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 193; name: BAM_COLLAPSE (38); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/9e7c750c241290a2ce1466c2ed9faf]
Oct-22 19:13:51.039 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:51.039 [Task submitter] INFO  nextflow.Session - [9a/46cb69] Submitted process > BAM_COLLAPSE (39)
Oct-22 19:13:51.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 626; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro250_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/eb/e7c6bf1a9aca13e053ff19c3441ed9]
Oct-22 19:13:51.061 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:51.061 [Task submitter] INFO  nextflow.Session - [04/aedda6] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro250_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:51.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 627; name: FEATURE_COUNT_NCRNA (RNAneuro250_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/aedda698b1543c83174e72f48b52f4]
Oct-22 19:13:51.231 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:51.232 [Task submitter] INFO  nextflow.Session - [08/b004bb] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro249_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:51.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 630; name: GENERATE_DEPTHFILE_STATS (RNAneuro249_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/b004bbaa947d6bf3468884364fa4a3]
Oct-22 19:13:51.800 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:51.800 [Task submitter] INFO  nextflow.Session - [7e/33a164] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro249_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:52.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 624; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro250_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/1f7081b041ac848e8d2da92bb30f57]
Oct-22 19:13:52.216 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:52.216 [Task submitter] INFO  nextflow.Session - [70/a64b65] Submitted process > BAM_SPLIT (38)
Oct-22 19:13:54.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 631; name: BAM_SPLIT (38); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/a64b659481ba1f0b86b41dc31d2f72]
Oct-22 19:13:54.497 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:54.497 [Task submitter] INFO  nextflow.Session - [fc/59f566] Submitted process > ADD_EMPTY_COUNTS (RNAneuro271_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:54.580 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 632; name: ADD_EMPTY_COUNTS (RNAneuro271_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/59f566fa3a65094770b3aaed6e4ea8]
Oct-22 19:13:54.583 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:54.583 [Task submitter] INFO  nextflow.Session - [e6/255625] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro271_trimmed_tRNAs-almost-mapped)
Oct-22 19:13:56.053 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 576; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro242_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/670e1620ef4e7fea61f62e0be27656]
Oct-22 19:13:56.058 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:56.058 [Task submitter] INFO  nextflow.Session - [56/6a28ca] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro250_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:56.067 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 633; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro271_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/25562509e62d0f92b998d49591c401]
Oct-22 19:13:56.070 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:56.071 [Task submitter] INFO  nextflow.Session - [1e/dd4b5a] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro250_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:13:56.323 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 635; name: GENERATE_DEPTHFILE_STATS (RNAneuro250_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/56/6a28caa0c383789b2fddce27b83d0b]
Oct-22 19:13:56.327 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:56.327 [Task submitter] INFO  nextflow.Session - [95/fc19a2] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro271_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:59.459 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 629; name: PLOT_TRNA_ALL_PLOTS (RNAneuro249_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/33a1640271eeb1fdce89194ca77a93]
Oct-22 19:13:59.461 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:59.461 [Task submitter] INFO  nextflow.Session - [ec/f6f431] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro271_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:59.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 582; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro264_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2d/6a62f40e16b7d107b3b648c034fbc6]
Oct-22 19:13:59.548 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:59.548 [Task submitter] INFO  nextflow.Session - [bd/d45d3e] Submitted process > FEATURE_COUNT_TRNA (RNAneuro271_trimmed_accepted_hits_tRNAs)
Oct-22 19:13:59.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 639; name: FEATURE_COUNT_TRNA (RNAneuro271_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/d45d3e048703727de99a9cb12c950c]
Oct-22 19:13:59.637 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:59.637 [Task submitter] INFO  nextflow.Session - [12/82c6c1] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro271_trimmed_accepted_hits_ncRNAs)
Oct-22 19:13:59.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 636; name: FEATURE_COUNT_NCRNA (RNAneuro271_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ec/f6f431eb86fa5e437c8da624a851db]
Oct-22 19:13:59.644 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:13:59.644 [Task submitter] INFO  nextflow.Session - [b1/c39f18] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro271_trimmed_accepted_hits_tRNAs)
Oct-22 19:14:02.522 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 634; name: PLOT_TRNA_ALL_PLOTS (RNAneuro250_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/dd4b5a462ed2f61465dd6e50a0420a]
Oct-22 19:14:02.526 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:02.526 [Task submitter] INFO  nextflow.Session - [ef/0dccf5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro242_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:02.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 638; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro271_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/95/fc19a28a467797baa28414176ec51a]
Oct-22 19:14:02.580 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:02.580 [Task submitter] INFO  nextflow.Session - [dc/5005c8] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro264_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:03.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 640; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro271_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/c39f18884c3dc283cf9b3e00c365a9]
Oct-22 19:14:04.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 641; name: GENERATE_DEPTHFILE_STATS (RNAneuro242_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ef/0dccf5c58cab5dae42dfc0a77d3501]
Oct-22 19:14:04.113 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:04.113 [Task submitter] INFO  nextflow.Session - [4f/5ed00a] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro271_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:14:04.116 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:04.116 [Task submitter] INFO  nextflow.Session - [99/53fac5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro271_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:14:04.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 642; name: GENERATE_DEPTHFILE_STATS (RNAneuro264_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/5005c8d4d7e1cc142c099786d7691e]
Oct-22 19:14:04.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 644; name: GENERATE_DEPTHFILE_STATS (RNAneuro271_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/99/53fac5b2689603ad0405b212fb2710]
Oct-22 19:14:08.143 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 643; name: PLOT_TRNA_ALL_PLOTS (RNAneuro271_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/5ed00a2c02b5014812fa47d911cb32]
Oct-22 19:14:15.150 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 194; name: BAM_COLLAPSE (39); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9a/46cb692c804c0104df661b7c7da7b7]
Oct-22 19:14:15.153 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:15.153 [Task submitter] INFO  nextflow.Session - [f1/ab9bf2] Submitted process > BAM_COLLAPSE (40)
Oct-22 19:14:16.157 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:16.157 [Task submitter] INFO  nextflow.Session - [ed/ee01bb] Submitted process > BAM_SPLIT (39)
Oct-22 19:14:16.161 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:16.161 [Task submitter] INFO  nextflow.Session - [e3/dabc0c] Submitted process > ADD_EMPTY_COUNTS (RNAneuro254_trimmed_tRNAs-almost-mapped)
Oct-22 19:14:16.164 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:16.164 [Task submitter] INFO  nextflow.Session - [11/59a2dd] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro254_trimmed_tRNAs-almost-mapped)
Oct-22 19:14:16.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 645; name: ADD_EMPTY_COUNTS (RNAneuro254_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/dabc0cc99eacab39880b40fa76c647]
Oct-22 19:14:18.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 647; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro254_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/59a2dd513a2326bced93cd85961a21]
Oct-22 19:14:18.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 646; name: BAM_SPLIT (39); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/ee01bb534180ab59980c54792a4a96]
Oct-22 19:14:19.375 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:19.375 [Task submitter] INFO  nextflow.Session - [0c/21b4f5] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro254_trimmed_accepted_hits_tRNAs)
Oct-22 19:14:19.378 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:19.378 [Task submitter] INFO  nextflow.Session - [5c/2dee6e] Submitted process > FEATURE_COUNT_TRNA (RNAneuro254_trimmed_accepted_hits_tRNAs)
Oct-22 19:14:19.380 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:19.381 [Task submitter] INFO  nextflow.Session - [29/ddaf84] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro254_trimmed_accepted_hits_tRNAs)
Oct-22 19:14:20.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 649; name: FEATURE_COUNT_TRNA (RNAneuro254_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/2dee6e150e9aa54cc4e50937316275]
Oct-22 19:14:20.111 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:20.111 [Task submitter] INFO  nextflow.Session - [10/bb0185] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro254_trimmed_accepted_hits_ncRNAs)
Oct-22 19:14:21.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 595; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro245_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/e93cc2dd63f56d711693e375c635e5]
Oct-22 19:14:21.810 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:21.810 [Task submitter] INFO  nextflow.Session - [40/fdaa67] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro254_trimmed_accepted_hits_ncRNAs)
Oct-22 19:14:22.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 652; name: FEATURE_COUNT_NCRNA (RNAneuro254_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/fdaa67c2753351ab197de49ff01f3d]
Oct-22 19:14:22.005 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:22.005 [Task submitter] INFO  nextflow.Session - [71/beeecf] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro245_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:22.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 651; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro254_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0c/21b4f564f0626fb61ead9ba4e7af11]
Oct-22 19:14:23.481 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 653; name: GENERATE_DEPTHFILE_STATS (RNAneuro245_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/beeecfb4ce972ecd60ab0616345bf1]
Oct-22 19:14:23.834 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 648; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro254_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/29/ddaf84917f1ed894a8fb4a103ceb0e]
Oct-22 19:14:24.840 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:24.840 [Task submitter] INFO  nextflow.Session - [b8/872cef] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro254_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:14:24.845 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:24.846 [Task submitter] INFO  nextflow.Session - [5a/2ab66d] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro254_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:14:25.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 654; name: GENERATE_DEPTHFILE_STATS (RNAneuro254_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/872cef920188a921f09e523af5acd3]
Oct-22 19:14:30.531 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 655; name: PLOT_TRNA_ALL_PLOTS (RNAneuro254_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5a/2ab66d9d28c50aadbd5778b51f42c3]
Oct-22 19:14:30.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 607; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro243_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/e0b2e97c370934567691f6dfd579fd]
Oct-22 19:14:31.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 616; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro249_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3f/635f422837cb6ffefe9960e5cde9d3]
Oct-22 19:14:31.074 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:31.074 [Task submitter] INFO  nextflow.Session - [e9/790dd2] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro243_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:32.077 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:32.078 [Task submitter] INFO  nextflow.Session - [e9/7e1ab1] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro249_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:32.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 656; name: GENERATE_DEPTHFILE_STATS (RNAneuro243_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e9/790dd2a93ddcd1f3392604b72522ff]
Oct-22 19:14:33.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 657; name: GENERATE_DEPTHFILE_STATS (RNAneuro249_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e9/7e1ab106d0ede3764178a4f4ff7c43]
Oct-22 19:14:36.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 628; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro250_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f4/6ebad750257adcee7676fadd7caacf]
Oct-22 19:14:37.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:37.733 [Task submitter] INFO  nextflow.Session - [9d/154e84] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro250_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:39.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 658; name: GENERATE_DEPTHFILE_STATS (RNAneuro250_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/154e84c09224fa90ef204d1253377b]
Oct-22 19:14:48.456 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 637; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro271_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/82c6c1b67e14dc2fcaeea00a7eeb53]
Oct-22 19:14:49.458 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:49.459 [Task submitter] INFO  nextflow.Session - [77/99d6dd] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro271_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:14:51.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 659; name: GENERATE_DEPTHFILE_STATS (RNAneuro271_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/77/99d6dd4a2478f88bf992c54038d6a9]
Oct-22 19:14:58.390 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 195; name: BAM_COLLAPSE (40); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f1/ab9bf210f97e79221dcac12723f282]
Oct-22 19:14:58.392 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:58.393 [Task submitter] INFO  nextflow.Session - [8b/082729] Submitted process > BAM_COLLAPSE (41)
Oct-22 19:14:59.396 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:59.397 [Task submitter] INFO  nextflow.Session - [2d/b3400e] Submitted process > BAM_SPLIT (40)
Oct-22 19:14:59.400 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:59.400 [Task submitter] INFO  nextflow.Session - [bb/fb4622] Submitted process > ADD_EMPTY_COUNTS (RNAneuro285_trimmed_tRNAs-almost-mapped)
Oct-22 19:14:59.403 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:14:59.403 [Task submitter] INFO  nextflow.Session - [b7/076d66] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro285_trimmed_tRNAs-almost-mapped)
Oct-22 19:14:59.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 660; name: ADD_EMPTY_COUNTS (RNAneuro285_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/fb462250651422ea212927d4ef2e7e]
Oct-22 19:15:01.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 662; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro285_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/076d667ff32ca67ec2f82e82e36f93]
Oct-22 19:15:02.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 661; name: BAM_SPLIT (40); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2d/b3400ee9ff54f12d7f6c995e674b11]
Oct-22 19:15:03.113 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:03.113 [Task submitter] INFO  nextflow.Session - [0b/2bd19e] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro285_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:03.116 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:03.116 [Task submitter] INFO  nextflow.Session - [98/7de456] Submitted process > FEATURE_COUNT_TRNA (RNAneuro285_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:03.119 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:03.119 [Task submitter] INFO  nextflow.Session - [d3/f11085] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro285_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:03.123 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:03.123 [Task submitter] INFO  nextflow.Session - [21/2f7b4c] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro285_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:03.125 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:03.125 [Task submitter] INFO  nextflow.Session - [42/3a1bb9] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro285_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:03.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 663; name: FEATURE_COUNT_TRNA (RNAneuro285_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/7de456fab97ccd23f9e3ffe50501fb]
Oct-22 19:15:03.885 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 667; name: FEATURE_COUNT_NCRNA (RNAneuro285_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/42/3a1bb9ec14168c2fdffa1289ad36ef]
Oct-22 19:15:07.178 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 666; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro285_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/21/2f7b4c0857fa04fe90a068e6acb0ee]
Oct-22 19:15:08.181 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:08.182 [Task submitter] INFO  nextflow.Session - [2e/6a5a0a] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro285_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:08.184 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:08.185 [Task submitter] INFO  nextflow.Session - [59/31f90a] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro285_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:08.500 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 669; name: GENERATE_DEPTHFILE_STATS (RNAneuro285_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/6a5a0aa7868f306d3e9f555ebb0ba0]
Oct-22 19:15:08.995 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 664; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro285_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0b/2bd19e7fb665a405118271898cc675]
Oct-22 19:15:09.074 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 650; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro254_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/bb0185cffda5d507ea1347bc4ce8bb]
Oct-22 19:15:10.077 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:10.077 [Task submitter] INFO  nextflow.Session - [53/2e21d0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro254_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:15:11.504 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 670; name: GENERATE_DEPTHFILE_STATS (RNAneuro254_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/53/2e21d0793455b70f077d6e19a188cb]
Oct-22 19:15:12.170 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 668; name: PLOT_TRNA_ALL_PLOTS (RNAneuro285_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/59/31f90a188b7e3b09dbf4945f5c55db]
Oct-22 19:15:20.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 196; name: BAM_COLLAPSE (41); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/08272922325a92a0ca2d86a41a3a4b]
Oct-22 19:15:20.270 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:20.270 [Task submitter] INFO  nextflow.Session - [38/8fc2c8] Submitted process > BAM_COLLAPSE (42)
Oct-22 19:15:21.274 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:21.275 [Task submitter] INFO  nextflow.Session - [36/b0f1ef] Submitted process > BAM_SPLIT (41)
Oct-22 19:15:21.278 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:21.278 [Task submitter] INFO  nextflow.Session - [84/5a69af] Submitted process > ADD_EMPTY_COUNTS (RNAneuro247_trimmed_tRNAs-almost-mapped)
Oct-22 19:15:21.281 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:21.281 [Task submitter] INFO  nextflow.Session - [02/952567] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro247_trimmed_tRNAs-almost-mapped)
Oct-22 19:15:21.579 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 671; name: ADD_EMPTY_COUNTS (RNAneuro247_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/5a69affd60f7eacb37ef335b9a1123]
Oct-22 19:15:23.550 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 673; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro247_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/02/95256789249aad6e57fd9c87e0f02d]
Oct-22 19:15:23.835 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below
~> TaskHandler[id: 665; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro285_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/f11085c113fe42465b749e223ba4e3]
~> TaskHandler[id: 197; name: BAM_COLLAPSE (42); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/8fc2c80e361999ca2b586bbeb14235]
~> TaskHandler[id: 672; name: BAM_SPLIT (41); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/b0f1ef100b0381d33591c294019d46]
Oct-22 19:15:23.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 672; name: BAM_SPLIT (41); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/b0f1ef100b0381d33591c294019d46]
Oct-22 19:15:24.839 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:24.839 [Task submitter] INFO  nextflow.Session - [d1/643888] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro247_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:24.842 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:24.842 [Task submitter] INFO  nextflow.Session - [79/103df7] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro247_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:24.846 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:24.846 [Task submitter] INFO  nextflow.Session - [eb/b53d7f] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro247_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:24.848 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:24.848 [Task submitter] INFO  nextflow.Session - [42/68538e] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro247_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:24.852 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:24.852 [Task submitter] INFO  nextflow.Session - [1b/66205d] Submitted process > FEATURE_COUNT_TRNA (RNAneuro247_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:25.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 678; name: FEATURE_COUNT_TRNA (RNAneuro247_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/66205d1238cf90bdd34331d8961011]
Oct-22 19:15:25.292 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 674; name: FEATURE_COUNT_NCRNA (RNAneuro247_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/42/68538e0f76c71bee58d4fe64d9f3da]
Oct-22 19:15:28.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 675; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro247_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/eb/b53d7f5df7d9a04988a03c1a57b03e]
Oct-22 19:15:28.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 677; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro247_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d1/643888ebc70e007d76dd512e90eb74]
Oct-22 19:15:28.989 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:28.990 [Task submitter] INFO  nextflow.Session - [6c/f0d37a] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro247_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:28.993 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:28.993 [Task submitter] INFO  nextflow.Session - [b6/8bd674] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro247_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:29.254 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 680; name: GENERATE_DEPTHFILE_STATS (RNAneuro247_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6c/f0d37a2ce2d2c5ac37a2fffbecb929]
Oct-22 19:15:31.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 197; name: BAM_COLLAPSE (42); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/8fc2c80e361999ca2b586bbeb14235]
Oct-22 19:15:31.335 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:31.335 [Task submitter] INFO  nextflow.Session - [2e/3ebc70] Submitted process > BAM_COLLAPSE (43)
Oct-22 19:15:32.473 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:32.473 [Task submitter] INFO  nextflow.Session - [54/41d1c9] Submitted process > BAM_SPLIT (42)
Oct-22 19:15:32.476 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:32.476 [Task submitter] INFO  nextflow.Session - [34/78204e] Submitted process > ADD_EMPTY_COUNTS (RNAneuro241_trimmed_tRNAs-almost-mapped)
Oct-22 19:15:32.479 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:32.479 [Task submitter] INFO  nextflow.Session - [d8/8a9fc6] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro241_trimmed_tRNAs-almost-mapped)
Oct-22 19:15:32.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 682; name: ADD_EMPTY_COUNTS (RNAneuro241_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/78204e583f9aa415896cb6290a8bd3]
Oct-22 19:15:34.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 681; name: BAM_SPLIT (42); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/41d1c9335d75eb9fda6aa9de132ef8]
Oct-22 19:15:34.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 679; name: PLOT_TRNA_ALL_PLOTS (RNAneuro247_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/8bd6740f340e9743a2d2990617f3ac]
Oct-22 19:15:34.616 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:34.616 [Task submitter] INFO  nextflow.Session - [2c/01ea27] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro241_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:34.619 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:34.619 [Task submitter] INFO  nextflow.Session - [67/9265b3] Submitted process > FEATURE_COUNT_TRNA (RNAneuro241_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:34.623 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:34.623 [Task submitter] INFO  nextflow.Session - [92/7287e3] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro241_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:34.626 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:34.626 [Task submitter] INFO  nextflow.Session - [57/8c9592] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro241_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:34.629 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:34.629 [Task submitter] INFO  nextflow.Session - [f8/b1e000] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro241_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:34.963 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 684; name: FEATURE_COUNT_TRNA (RNAneuro241_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/9265b31f2fb7d5347c38c4efb61334]
Oct-22 19:15:34.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 683; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro241_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/8a9fc6fd12d08d83bfc96915d1013f]
Oct-22 19:15:35.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 688; name: FEATURE_COUNT_NCRNA (RNAneuro241_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/57/8c9592ba0c0212c87c701b2bcecfb2]
Oct-22 19:15:37.758 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 685; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro241_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/01ea27f54ebc4a60098cc232e1d81f]
Oct-22 19:15:38.413 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 686; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro241_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/7287e3aa11f87bc673860495a9625f]
Oct-22 19:15:39.662 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:39.662 [Task submitter] INFO  nextflow.Session - [4a/fe1fd8] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro241_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:39.665 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:39.665 [Task submitter] INFO  nextflow.Session - [72/79a42c] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro241_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:39.735 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 198; name: BAM_COLLAPSE (43); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/3ebc7030b6c4bd6be3bb41b4b3a89d]
Oct-22 19:15:39.743 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:39.744 [Task submitter] INFO  nextflow.Session - [5e/7f1e19] Submitted process > BAM_COLLAPSE (44)
Oct-22 19:15:39.940 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 690; name: GENERATE_DEPTHFILE_STATS (RNAneuro241_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4a/fe1fd8e9b40bbf7ed2a5a1f9df1a62]
Oct-22 19:15:39.944 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:39.944 [Task submitter] INFO  nextflow.Session - [43/016e8e] Submitted process > BAM_SPLIT (43)
Oct-22 19:15:39.948 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:39.948 [Task submitter] INFO  nextflow.Session - [28/cfb46e] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro251_trimmed_tRNAs-almost-mapped)
Oct-22 19:15:39.952 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:39.952 [Task submitter] INFO  nextflow.Session - [97/bd026d] Submitted process > ADD_EMPTY_COUNTS (RNAneuro251_trimmed_tRNAs-almost-mapped)
Oct-22 19:15:40.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 693; name: ADD_EMPTY_COUNTS (RNAneuro251_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/97/bd026db0b45ce6b1465551f5aedb44]
Oct-22 19:15:41.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 691; name: BAM_SPLIT (43); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/016e8ea9a53921e5d15b0a9cb9a48e]
Oct-22 19:15:42.071 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 692; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro251_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/28/cfb46ebfae13d80c3ad0613902e3cc]
Oct-22 19:15:42.073 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:42.074 [Task submitter] INFO  nextflow.Session - [f0/c083bf] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro251_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:42.077 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:42.077 [Task submitter] INFO  nextflow.Session - [dc/3d9424] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro251_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:42.081 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:42.082 [Task submitter] INFO  nextflow.Session - [0f/d7d063] Submitted process > FEATURE_COUNT_TRNA (RNAneuro251_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:42.085 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:42.085 [Task submitter] INFO  nextflow.Session - [2a/d88338] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro251_trimmed_accepted_hits_ncRNAs)
Oct-22 19:15:42.773 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 695; name: FEATURE_COUNT_TRNA (RNAneuro251_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/d7d0637f38f8dcde9e7ea1cfbe65b1]
Oct-22 19:15:42.776 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:42.776 [Task submitter] INFO  nextflow.Session - [00/a27228] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro251_trimmed_accepted_hits_tRNAs)
Oct-22 19:15:42.846 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 694; name: FEATURE_COUNT_NCRNA (RNAneuro251_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/3d9424551bad9bc6ef3939bab87518]
Oct-22 19:15:43.847 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 32 -- tasks to be submitted are shown below
~> TaskHandler[id: 200; name: BAM_COLLAPSE (45); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/413b3ed7f735bb17383cf7c65e319b]
~> TaskHandler[id: 201; name: BAM_COLLAPSE (46); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/c5d747425eea38c92e33e72d69d1ad]
~> TaskHandler[id: 202; name: BAM_COLLAPSE (47); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/2466f0a773a35f0ca0dc5c5a1d447a]
~> TaskHandler[id: 203; name: BAM_COLLAPSE (48); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cd/786cecb28fa68e5514ff0470550cbc]
~> TaskHandler[id: 204; name: BAM_COLLAPSE (49); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/851fbb1aed1372b1447cdc2f632b0d]
~> TaskHandler[id: 205; name: BAM_COLLAPSE (50); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e6bf2191853a265cadcac4757803e9]
~> TaskHandler[id: 206; name: BAM_COLLAPSE (51); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/53c819c5604fd417bd8d512eff80a4]
~> TaskHandler[id: 207; name: BAM_COLLAPSE (52); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/502b37e993b5b4500c2d124bd79d80]
~> TaskHandler[id: 208; name: BAM_COLLAPSE (53); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/51b52131ee32078f53894bc8d7dd56]
~> TaskHandler[id: 209; name: BAM_COLLAPSE (54); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/522c895d6b9b66eab223423f1eec42]
.. remaining tasks omitted.
Oct-22 19:15:45.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 689; name: PLOT_TRNA_ALL_PLOTS (RNAneuro241_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/72/79a42c35846d0762aca069baaef203]
Oct-22 19:15:46.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 696; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro251_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f0/c083bfccab7074437d33705f2abd26]
Oct-22 19:15:46.906 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 697; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro251_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/00/a27228b30bc90dbfdd53710835e597]
Oct-22 19:15:47.909 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:47.910 [Task submitter] INFO  nextflow.Session - [22/f4df1c] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro251_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:47.912 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:47.913 [Task submitter] INFO  nextflow.Session - [0a/ea5ae7] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro251_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:15:48.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 700; name: GENERATE_DEPTHFILE_STATS (RNAneuro251_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/ea5ae71d27290a5635e02e3228e2d0]
Oct-22 19:15:51.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 665; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro285_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/f11085c113fe42465b749e223ba4e3]
Oct-22 19:15:51.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 699; name: PLOT_TRNA_ALL_PLOTS (RNAneuro251_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/f4df1cf90fa16037d35479e6b899c1]
Oct-22 19:15:51.972 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:15:51.973 [Task submitter] INFO  nextflow.Session - [f7/fac863] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro285_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:15:53.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 701; name: GENERATE_DEPTHFILE_STATS (RNAneuro285_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/fac8632d33838bf109d5c89429f777]
Oct-22 19:16:05.030 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 199; name: BAM_COLLAPSE (44); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/7f1e19d34efc6de82270a014998188]
Oct-22 19:16:05.033 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:05.033 [Task submitter] INFO  nextflow.Session - [a2/413b3e] Submitted process > BAM_COLLAPSE (45)
Oct-22 19:16:06.037 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:06.037 [Task submitter] INFO  nextflow.Session - [68/1c4965] Submitted process > BAM_SPLIT (44)
Oct-22 19:16:06.040 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:06.041 [Task submitter] INFO  nextflow.Session - [33/5eaa23] Submitted process > ADD_EMPTY_COUNTS (RNAneuro248_trimmed_tRNAs-almost-mapped)
Oct-22 19:16:06.044 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:06.044 [Task submitter] INFO  nextflow.Session - [6f/593a4d] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro248_trimmed_tRNAs-almost-mapped)
Oct-22 19:16:06.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 702; name: ADD_EMPTY_COUNTS (RNAneuro248_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/5eaa23d68861be884c5479da172add]
Oct-22 19:16:08.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 703; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro248_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/593a4df2c9f83fbeef83ddaad384ce]
Oct-22 19:16:08.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 704; name: BAM_SPLIT (44); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/1c4965a7ebf4342bad39f4b3aa766b]
Oct-22 19:16:09.574 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:09.574 [Task submitter] INFO  nextflow.Session - [2e/f6eee3] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro248_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:09.577 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:09.577 [Task submitter] INFO  nextflow.Session - [22/a8ae80] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro248_trimmed_accepted_hits_ncRNAs)
Oct-22 19:16:09.580 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:09.580 [Task submitter] INFO  nextflow.Session - [f2/97bb27] Submitted process > FEATURE_COUNT_TRNA (RNAneuro248_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:09.583 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:09.583 [Task submitter] INFO  nextflow.Session - [d3/ec9708] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro248_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:09.587 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:09.587 [Task submitter] INFO  nextflow.Session - [f2/8b445a] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro248_trimmed_accepted_hits_ncRNAs)
Oct-22 19:16:10.073 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 707; name: FEATURE_COUNT_TRNA (RNAneuro248_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/97bb27b20ce591990d2b92c86fed67]
Oct-22 19:16:10.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 705; name: FEATURE_COUNT_NCRNA (RNAneuro248_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/8b445a8dad05f6d9972e04d29af722]
Oct-22 19:16:12.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 676; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro247_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/103df74ec16c49b5086a171121b8cf]
Oct-22 19:16:13.095 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 706; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro248_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/f6eee34078313e04773f2536af8f7f]
Oct-22 19:16:13.098 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:13.098 [Task submitter] INFO  nextflow.Session - [48/5265d0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro247_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:16:13.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 709; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro248_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/ec970835391067b3e6862c81587fa4]
Oct-22 19:16:14.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 710; name: GENERATE_DEPTHFILE_STATS (RNAneuro247_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/48/5265d0439ff5c3fb95d7f33bb0239b]
Oct-22 19:16:14.514 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:14.515 [Task submitter] INFO  nextflow.Session - [5e/b08033] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro248_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:16:14.518 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:14.518 [Task submitter] INFO  nextflow.Session - [ab/ad002d] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro248_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:16:14.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 712; name: GENERATE_DEPTHFILE_STATS (RNAneuro248_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/b080330c5917b7f2131309c41ac614]
Oct-22 19:16:18.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 711; name: PLOT_TRNA_ALL_PLOTS (RNAneuro248_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ab/ad002d2ae1494f396fb398311b4678]
Oct-22 19:16:22.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 687; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro241_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f8/b1e0000b0f4e64102f1e5f8b915727]
Oct-22 19:16:23.005 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:23.005 [Task submitter] INFO  nextflow.Session - [1a/bf73d0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro241_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:16:24.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 713; name: GENERATE_DEPTHFILE_STATS (RNAneuro241_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/bf73d0b4e01fec83818972a4a99e53]
Oct-22 19:16:27.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 200; name: BAM_COLLAPSE (45); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/413b3ed7f735bb17383cf7c65e319b]
Oct-22 19:16:27.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:27.733 [Task submitter] INFO  nextflow.Session - [c8/c5d747] Submitted process > BAM_COLLAPSE (46)
Oct-22 19:16:29.012 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:29.013 [Task submitter] INFO  nextflow.Session - [3b/73b3c5] Submitted process > BAM_SPLIT (45)
Oct-22 19:16:29.016 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:29.016 [Task submitter] INFO  nextflow.Session - [12/28a4a3] Submitted process > ADD_EMPTY_COUNTS (RNAneuro270_trimmed_tRNAs-almost-mapped)
Oct-22 19:16:29.019 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:29.020 [Task submitter] INFO  nextflow.Session - [08/7c8946] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro270_trimmed_tRNAs-almost-mapped)
Oct-22 19:16:29.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 714; name: ADD_EMPTY_COUNTS (RNAneuro270_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/28a4a3156f3ee1c4cdd0b650e133ac]
Oct-22 19:16:31.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 716; name: BAM_SPLIT (45); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3b/73b3c58c66d176f84a452cee38d291]
Oct-22 19:16:31.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 715; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro270_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/7c89465893bd332c389030fbc6abb1]
Oct-22 19:16:31.179 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:31.180 [Task submitter] INFO  nextflow.Session - [1f/273bb8] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro270_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:31.185 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:31.185 [Task submitter] INFO  nextflow.Session - [4c/37d0fa] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro270_trimmed_accepted_hits_ncRNAs)
Oct-22 19:16:31.188 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:31.188 [Task submitter] INFO  nextflow.Session - [4d/372907] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro270_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:31.192 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:31.192 [Task submitter] INFO  nextflow.Session - [9f/d06534] Submitted process > FEATURE_COUNT_TRNA (RNAneuro270_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:31.195 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:31.196 [Task submitter] INFO  nextflow.Session - [35/d0c74a] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro270_trimmed_accepted_hits_ncRNAs)
Oct-22 19:16:31.875 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 717; name: FEATURE_COUNT_TRNA (RNAneuro270_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/d0653415fdf31f7db9485150e60adf]
Oct-22 19:16:31.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 720; name: FEATURE_COUNT_NCRNA (RNAneuro270_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/d0c74a8f56d0dd11e6bdec7abb273b]
Oct-22 19:16:32.205 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 698; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro251_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2a/d8833891b7a9735486cf454730f5eb]
Oct-22 19:16:33.208 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:33.208 [Task submitter] INFO  nextflow.Session - [9c/15bd00] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro251_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:16:34.631 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 722; name: GENERATE_DEPTHFILE_STATS (RNAneuro251_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/15bd003533240f8bc4c3ac52e41fd2]
Oct-22 19:16:35.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 721; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro270_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4d/372907b5cb8ac0bfa884e83bbdd661]
Oct-22 19:16:35.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 718; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro270_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/273bb818a7bf842686079384e1a676]
Oct-22 19:16:35.692 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:35.693 [Task submitter] INFO  nextflow.Session - [9b/70bb2c] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro270_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:16:35.695 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:35.696 [Task submitter] INFO  nextflow.Session - [8d/a7b155] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro270_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:16:35.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 724; name: GENERATE_DEPTHFILE_STATS (RNAneuro270_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/70bb2cebf9ca644ed6b838bbe15639]
Oct-22 19:16:38.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 201; name: BAM_COLLAPSE (46); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/c5d747425eea38c92e33e72d69d1ad]
Oct-22 19:16:38.795 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:38.795 [Task submitter] INFO  nextflow.Session - [e7/2466f0] Submitted process > BAM_COLLAPSE (47)
Oct-22 19:16:39.799 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:39.799 [Task submitter] INFO  nextflow.Session - [04/721cc1] Submitted process > BAM_SPLIT (46)
Oct-22 19:16:39.802 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:39.803 [Task submitter] INFO  nextflow.Session - [59/5be3c8] Submitted process > ADD_EMPTY_COUNTS (RNAneuro269_trimmed_tRNAs-almost-mapped)
Oct-22 19:16:39.807 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:39.807 [Task submitter] INFO  nextflow.Session - [94/6a0755] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro269_trimmed_tRNAs-almost-mapped)
Oct-22 19:16:39.894 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 725; name: ADD_EMPTY_COUNTS (RNAneuro269_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/59/5be3c841aa780e4d999eda6ee7f015]
Oct-22 19:16:40.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 723; name: PLOT_TRNA_ALL_PLOTS (RNAneuro270_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/a7b155053e3fd2d9457c2d781ef381]
Oct-22 19:16:41.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 727; name: BAM_SPLIT (46); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/721cc1ca31331727cb51d0134b452f]
Oct-22 19:16:42.080 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 726; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro269_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/6a075577739c6cef2ca46fdb129aab]
Oct-22 19:16:42.082 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:42.083 [Task submitter] INFO  nextflow.Session - [49/86aa39] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro269_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:42.086 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:42.086 [Task submitter] INFO  nextflow.Session - [67/9822cf] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro269_trimmed_accepted_hits_ncRNAs)
Oct-22 19:16:42.090 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:42.090 [Task submitter] INFO  nextflow.Session - [cc/2863c3] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro269_trimmed_accepted_hits_ncRNAs)
Oct-22 19:16:42.094 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:42.094 [Task submitter] INFO  nextflow.Session - [b5/1cd096] Submitted process > FEATURE_COUNT_TRNA (RNAneuro269_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:42.098 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:42.099 [Task submitter] INFO  nextflow.Session - [0e/281b63] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro269_trimmed_accepted_hits_tRNAs)
Oct-22 19:16:42.370 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 732; name: FEATURE_COUNT_TRNA (RNAneuro269_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b5/1cd096865d1cc972ad7f42a8403168]
Oct-22 19:16:42.446 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 730; name: FEATURE_COUNT_NCRNA (RNAneuro269_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/9822cf0f0299a0d18113ae8c0b3c6c]
Oct-22 19:16:45.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 729; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro269_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/49/86aa398d5556bd51df767819e15ee2]
Oct-22 19:16:45.883 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 731; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro269_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0e/281b63415319564c63ba56b5a6ffe2]
Oct-22 19:16:46.887 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:46.887 [Task submitter] INFO  nextflow.Session - [4c/bc3b50] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro269_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:16:46.890 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:46.890 [Task submitter] INFO  nextflow.Session - [70/91bd52] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro269_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:16:47.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 734; name: GENERATE_DEPTHFILE_STATS (RNAneuro269_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/bc3b50c21dfc7eae0003ccb8304ed3]
Oct-22 19:16:50.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 733; name: PLOT_TRNA_ALL_PLOTS (RNAneuro269_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/91bd52587070da70578f74d20d8753]
Oct-22 19:16:56.419 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 708; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro248_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/a8ae80594bfd4ed8899207ef5ba6b4]
Oct-22 19:16:57.422 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:16:57.423 [Task submitter] INFO  nextflow.Session - [c1/fc5bbb] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro248_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:16:58.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 735; name: GENERATE_DEPTHFILE_STATS (RNAneuro248_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/fc5bbb79dbb76f2609cffeb915cb14]
Oct-22 19:17:16.304 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 202; name: BAM_COLLAPSE (47); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/2466f0a773a35f0ca0dc5c5a1d447a]
Oct-22 19:17:16.306 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:16.307 [Task submitter] INFO  nextflow.Session - [cd/786cec] Submitted process > BAM_COLLAPSE (48)
Oct-22 19:17:17.310 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:17.310 [Task submitter] INFO  nextflow.Session - [87/336259] Submitted process > BAM_SPLIT (47)
Oct-22 19:17:17.313 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:17.313 [Task submitter] INFO  nextflow.Session - [59/476225] Submitted process > ADD_EMPTY_COUNTS (RNAneuro267_trimmed_tRNAs-almost-mapped)
Oct-22 19:17:17.316 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:17.316 [Task submitter] INFO  nextflow.Session - [56/91a29c] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro267_trimmed_tRNAs-almost-mapped)
Oct-22 19:17:17.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 738; name: ADD_EMPTY_COUNTS (RNAneuro267_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/59/476225ea742d18b63ef94dfe6de9e7]
Oct-22 19:17:19.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 736; name: BAM_SPLIT (47); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/336259a2e1e4f9e40e96f1e6fc0f4d]
Oct-22 19:17:19.692 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 737; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro267_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/56/91a29c9830758bba4702d6d9bbaf61]
Oct-22 19:17:19.694 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:19.694 [Task submitter] INFO  nextflow.Session - [d4/d2ec85] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro267_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:19.697 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:19.697 [Task submitter] INFO  nextflow.Session - [84/16d709] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro267_trimmed_accepted_hits_ncRNAs)
Oct-22 19:17:19.700 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:19.700 [Task submitter] INFO  nextflow.Session - [a5/9eb260] Submitted process > FEATURE_COUNT_TRNA (RNAneuro267_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:19.702 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:19.702 [Task submitter] INFO  nextflow.Session - [44/282944] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro267_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:19.705 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:19.705 [Task submitter] INFO  nextflow.Session - [82/e0f4c0] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro267_trimmed_accepted_hits_ncRNAs)
Oct-22 19:17:20.119 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 742; name: FEATURE_COUNT_TRNA (RNAneuro267_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a5/9eb26078e6218a01524f2d9432e65b]
Oct-22 19:17:20.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 740; name: FEATURE_COUNT_NCRNA (RNAneuro267_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/16d709bb24bb693593f958c03bbc14]
Oct-22 19:17:20.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 719; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro270_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/37d0fa6b018b67fc87d40c8def55b8]
Oct-22 19:17:21.662 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:21.663 [Task submitter] INFO  nextflow.Session - [32/69e90c] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro270_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:17:23.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 744; name: GENERATE_DEPTHFILE_STATS (RNAneuro270_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/69e90ccb0120ef5d80c9cd707f4391]
Oct-22 19:17:24.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 743; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro267_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/282944a0aa642008797e02341d5d46]
Oct-22 19:17:24.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 741; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro267_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/d2ec856448f1371e8d30ee7d584838]
Oct-22 19:17:24.482 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:24.482 [Task submitter] INFO  nextflow.Session - [f6/6a647a] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro267_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:17:24.485 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:24.485 [Task submitter] INFO  nextflow.Session - [da/6070b0] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro267_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:17:24.751 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 746; name: GENERATE_DEPTHFILE_STATS (RNAneuro267_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f6/6a647a1da92e4b522c3207a14b20da]
Oct-22 19:17:27.765 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 728; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro269_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cc/2863c35baea9c5eaa96b79fd3b4a8f]
Oct-22 19:17:28.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 745; name: PLOT_TRNA_ALL_PLOTS (RNAneuro267_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/6070b09529fdd867ea1ca047b14664]
Oct-22 19:17:28.284 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:28.284 [Task submitter] INFO  nextflow.Session - [dc/030ebf] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro269_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:17:29.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 747; name: GENERATE_DEPTHFILE_STATS (RNAneuro269_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/030ebf7ba127257aa5f464210185d0]
Oct-22 19:17:50.683 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 203; name: BAM_COLLAPSE (48); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cd/786cecb28fa68e5514ff0470550cbc]
Oct-22 19:17:50.686 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:50.686 [Task submitter] INFO  nextflow.Session - [9c/851fbb] Submitted process > BAM_COLLAPSE (49)
Oct-22 19:17:51.690 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:51.690 [Task submitter] INFO  nextflow.Session - [ff/f7ab0e] Submitted process > BAM_SPLIT (48)
Oct-22 19:17:51.693 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:51.693 [Task submitter] INFO  nextflow.Session - [36/02ecd1] Submitted process > ADD_EMPTY_COUNTS (RNAneuro259_trimmed_tRNAs-almost-mapped)
Oct-22 19:17:51.697 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:51.697 [Task submitter] INFO  nextflow.Session - [22/ec6c1c] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro259_trimmed_tRNAs-almost-mapped)
Oct-22 19:17:51.778 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 750; name: ADD_EMPTY_COUNTS (RNAneuro259_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/02ecd11fd227406bd57beac7ff33ad]
Oct-22 19:17:53.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 748; name: BAM_SPLIT (48); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/f7ab0ef835c59ef58b42065aef1df8]
Oct-22 19:17:53.800 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 749; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro259_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/ec6c1cd8f1a5a8cfe21b1816dbbd10]
Oct-22 19:17:53.803 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:53.803 [Task submitter] INFO  nextflow.Session - [01/b84c00] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro259_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:53.806 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:53.806 [Task submitter] INFO  nextflow.Session - [24/326dc9] Submitted process > FEATURE_COUNT_TRNA (RNAneuro259_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:53.809 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:53.809 [Task submitter] INFO  nextflow.Session - [6d/ccf8a2] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro259_trimmed_accepted_hits_ncRNAs)
Oct-22 19:17:53.812 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:53.812 [Task submitter] INFO  nextflow.Session - [0c/b3e864] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro259_trimmed_accepted_hits_ncRNAs)
Oct-22 19:17:53.814 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:53.815 [Task submitter] INFO  nextflow.Session - [84/7a0bff] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro259_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:54.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 752; name: FEATURE_COUNT_TRNA (RNAneuro259_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/326dc90aeaf0f72a0fa407203e1b40]
Oct-22 19:17:54.222 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 753; name: FEATURE_COUNT_NCRNA (RNAneuro259_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/ccf8a220afae889feefb7e32c38842]
Oct-22 19:17:57.113 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 204; name: BAM_COLLAPSE (49); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/851fbb1aed1372b1447cdc2f632b0d]
Oct-22 19:17:57.116 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:57.116 [Task submitter] INFO  nextflow.Session - [70/e6bf21] Submitted process > BAM_COLLAPSE (50)
Oct-22 19:17:57.133 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 755; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro259_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/b84c003d84a134ea3ec5405c03fd62]
Oct-22 19:17:57.135 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:57.136 [Task submitter] INFO  nextflow.Session - [b7/3cee7e] Submitted process > BAM_SPLIT (49)
Oct-22 19:17:57.139 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:57.139 [Task submitter] INFO  nextflow.Session - [a4/31cedd] Submitted process > ADD_EMPTY_COUNTS (RNAneuro260_trimmed_tRNAs-almost-mapped)
Oct-22 19:17:57.142 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:57.142 [Task submitter] INFO  nextflow.Session - [fb/8a79fe] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro260_trimmed_tRNAs-almost-mapped)
Oct-22 19:17:57.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 757; name: ADD_EMPTY_COUNTS (RNAneuro260_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/31ceddc882263489fb3ee945597fea]
Oct-22 19:17:58.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 754; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro259_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/7a0bff04a767f2b4609b262b31c936]
Oct-22 19:17:59.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 756; name: BAM_SPLIT (49); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/3cee7eadfcf39476a99d2d9a8203c9]
Oct-22 19:17:59.029 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:59.029 [Task submitter] INFO  nextflow.Session - [dc/45d5a3] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro259_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:17:59.033 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:59.033 [Task submitter] INFO  nextflow.Session - [bb/51960c] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro259_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:17:59.308 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 760; name: GENERATE_DEPTHFILE_STATS (RNAneuro259_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/45d5a3deae5a1c58f06d3bbbf2862a]
Oct-22 19:17:59.312 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:59.313 [Task submitter] INFO  nextflow.Session - [da/b4c7ec] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro260_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:59.317 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:59.317 [Task submitter] INFO  nextflow.Session - [5b/5e6d9b] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro260_trimmed_accepted_hits_ncRNAs)
Oct-22 19:17:59.321 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:59.321 [Task submitter] INFO  nextflow.Session - [9d/5b88fe] Submitted process > FEATURE_COUNT_TRNA (RNAneuro260_trimmed_accepted_hits_tRNAs)
Oct-22 19:17:59.325 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:17:59.325 [Task submitter] INFO  nextflow.Session - [6b/0779f4] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro260_trimmed_accepted_hits_ncRNAs)
Oct-22 19:18:00.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 758; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro260_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/8a79fe979fcf7cf2340fd714fc4354]
Oct-22 19:18:00.046 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:00.046 [Task submitter] INFO  nextflow.Session - [9d/7e0e7a] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro260_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:00.055 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 765; name: FEATURE_COUNT_TRNA (RNAneuro260_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/5b88fef7c5f08b6562a8cfcd229d9b]
Oct-22 19:18:00.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 762; name: FEATURE_COUNT_NCRNA (RNAneuro260_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/5e6d9b0993b64184a521aa4567db25]
Oct-22 19:18:03.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 763; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro260_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/b4c7ec0c4f2b55c6f3ea4d30829e70]
Oct-22 19:18:03.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 759; name: PLOT_TRNA_ALL_PLOTS (RNAneuro259_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/51960cccdfb623a154f03729578e90]
Oct-22 19:18:03.676 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 764; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro260_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/7e0e7a8c1204f69f93b8917adefad5]
Oct-22 19:18:04.678 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:04.678 [Task submitter] INFO  nextflow.Session - [72/62fdc5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro260_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:18:04.680 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:04.680 [Task submitter] INFO  nextflow.Session - [6f/10ca8a] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro260_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:18:04.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 767; name: GENERATE_DEPTHFILE_STATS (RNAneuro260_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/72/62fdc577a37aadd34055299f106ce2]
Oct-22 19:18:05.016 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 739; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro267_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/82/e0f4c0fe4c318c2c10cbf09dde69d5]
Oct-22 19:18:06.018 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:06.019 [Task submitter] INFO  nextflow.Session - [ea/f182f6] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro267_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:18:07.477 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 768; name: GENERATE_DEPTHFILE_STATS (RNAneuro267_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/f182f69a4c271099b22c66d409d95f]
Oct-22 19:18:08.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 766; name: PLOT_TRNA_ALL_PLOTS (RNAneuro260_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/10ca8a2e76c611c81355671ab0cfd3]
Oct-22 19:18:17.804 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 205; name: BAM_COLLAPSE (50); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/e6bf2191853a265cadcac4757803e9]
Oct-22 19:18:17.806 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:17.806 [Task submitter] INFO  nextflow.Session - [5b/53c819] Submitted process > BAM_COLLAPSE (51)
Oct-22 19:18:18.808 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:18.809 [Task submitter] INFO  nextflow.Session - [ef/f53289] Submitted process > BAM_SPLIT (50)
Oct-22 19:18:18.811 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:18.811 [Task submitter] INFO  nextflow.Session - [7e/7663d2] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro252_trimmed_tRNAs-almost-mapped)
Oct-22 19:18:18.813 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:18.813 [Task submitter] INFO  nextflow.Session - [a3/dd1415] Submitted process > ADD_EMPTY_COUNTS (RNAneuro252_trimmed_tRNAs-almost-mapped)
Oct-22 19:18:18.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 771; name: ADD_EMPTY_COUNTS (RNAneuro252_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a3/dd1415ea5d280ca0b16a743d405eca]
Oct-22 19:18:21.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 770; name: BAM_SPLIT (50); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ef/f53289500722c450471452d5634d20]
Oct-22 19:18:21.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 769; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro252_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/7663d2c167ed3ef014772dda4e9360]
Oct-22 19:18:21.351 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:21.351 [Task submitter] INFO  nextflow.Session - [c3/61df92] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro252_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:21.354 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:21.354 [Task submitter] INFO  nextflow.Session - [70/ed835a] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro252_trimmed_accepted_hits_ncRNAs)
Oct-22 19:18:21.356 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:21.356 [Task submitter] INFO  nextflow.Session - [ab/6fc202] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro252_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:21.358 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:21.358 [Task submitter] INFO  nextflow.Session - [dd/dd26b3] Submitted process > FEATURE_COUNT_TRNA (RNAneuro252_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:21.360 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:21.360 [Task submitter] INFO  nextflow.Session - [f2/3af8f0] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro252_trimmed_accepted_hits_ncRNAs)
Oct-22 19:18:21.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 773; name: FEATURE_COUNT_TRNA (RNAneuro252_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dd/dd26b3f063dc0c9eb9b8f74e23135c]
Oct-22 19:18:21.935 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 774; name: FEATURE_COUNT_NCRNA (RNAneuro252_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/3af8f0633fe78458d92610b068f6df]
Oct-22 19:18:25.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 775; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro252_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c3/61df9293c6fba069b75ee1dc6ff8e6]
Oct-22 19:18:25.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 776; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro252_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ab/6fc2027b436c9763cb00a1ba1720d6]
Oct-22 19:18:26.296 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:26.296 [Task submitter] INFO  nextflow.Session - [bc/978728] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro252_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:18:26.298 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:26.298 [Task submitter] INFO  nextflow.Session - [94/8262a5] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro252_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:18:26.583 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 778; name: GENERATE_DEPTHFILE_STATS (RNAneuro252_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/9787289695b08275a30769d56a3e7d]
Oct-22 19:18:30.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 777; name: PLOT_TRNA_ALL_PLOTS (RNAneuro252_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/94/8262a5644d3fcbce30c30eb2f5e44a]
Oct-22 19:18:33.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 206; name: BAM_COLLAPSE (51); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/53c819c5604fd417bd8d512eff80a4]
Oct-22 19:18:33.807 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:33.807 [Task submitter] INFO  nextflow.Session - [01/502b37] Submitted process > BAM_COLLAPSE (52)
Oct-22 19:18:34.810 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:34.810 [Task submitter] INFO  nextflow.Session - [6f/8634a1] Submitted process > BAM_SPLIT (51)
Oct-22 19:18:34.812 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:34.812 [Task submitter] INFO  nextflow.Session - [e0/4c8f0d] Submitted process > ADD_EMPTY_COUNTS (RNAneuro273_trimmed_tRNAs-almost-mapped)
Oct-22 19:18:34.814 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:34.814 [Task submitter] INFO  nextflow.Session - [f0/1bca4c] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro273_trimmed_tRNAs-almost-mapped)
Oct-22 19:18:34.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 779; name: ADD_EMPTY_COUNTS (RNAneuro273_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/4c8f0da709d5fd3065f80fb15d59db]
Oct-22 19:18:36.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 780; name: BAM_SPLIT (51); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/8634a1356c6a59e4b9dee03f4005c8]
Oct-22 19:18:37.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 781; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro273_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f0/1bca4c8f51250ad6ac23487519441d]
Oct-22 19:18:37.054 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:37.054 [Task submitter] INFO  nextflow.Session - [1f/3ba161] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro273_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:37.056 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:37.056 [Task submitter] INFO  nextflow.Session - [61/79b3ad] Submitted process > FEATURE_COUNT_TRNA (RNAneuro273_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:37.058 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:37.058 [Task submitter] INFO  nextflow.Session - [77/a3ee07] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro273_trimmed_accepted_hits_ncRNAs)
Oct-22 19:18:37.060 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:37.060 [Task submitter] INFO  nextflow.Session - [34/862522] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro273_trimmed_accepted_hits_ncRNAs)
Oct-22 19:18:37.062 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:37.062 [Task submitter] INFO  nextflow.Session - [ad/9b9eea] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro273_trimmed_accepted_hits_tRNAs)
Oct-22 19:18:37.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 783; name: FEATURE_COUNT_TRNA (RNAneuro273_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/79b3ad048695ecf200860803602a85]
Oct-22 19:18:37.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 782; name: FEATURE_COUNT_NCRNA (RNAneuro273_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/77/a3ee073a0cea2ee0cb21de843bf5e8]
Oct-22 19:18:40.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 751; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro259_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0c/b3e864a46f4b024e37d68aeb286f2e]
Oct-22 19:18:41.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 786; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro273_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ad/9b9eea7329b81f20e7e5587d663eec]
Oct-22 19:18:41.011 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:41.011 [Task submitter] INFO  nextflow.Session - [bb/376173] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro259_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:18:41.015 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:41.015 [Task submitter] INFO  nextflow.Session - [5f/24ec01] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro273_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:18:41.018 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:41.018 [Task submitter] INFO  nextflow.Session - [f2/4e89aa] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro273_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:18:41.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 789; name: GENERATE_DEPTHFILE_STATS (RNAneuro273_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5f/24ec01a553d775b947a46270962f56]
Oct-22 19:18:41.437 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 784; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro273_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/3ba161395639fde077eeafc64035e4]
Oct-22 19:18:42.564 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 787; name: GENERATE_DEPTHFILE_STATS (RNAneuro259_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/3761739c4cce3858d2ac03714d6871]
Oct-22 19:18:44.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 788; name: PLOT_TRNA_ALL_PLOTS (RNAneuro273_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/4e89aa1f75246db40b45c7782056f2]
Oct-22 19:18:46.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 761; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro260_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6b/0779f46e1c230fa0dc0a7f621015e8]
Oct-22 19:18:47.221 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:18:47.221 [Task submitter] INFO  nextflow.Session - [12/31317e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro260_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:18:48.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 790; name: GENERATE_DEPTHFILE_STATS (RNAneuro260_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/31317e19dc2e05bc2b88379a719cd6]
Oct-22 19:19:01.420 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 207; name: BAM_COLLAPSE (52); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/502b37e993b5b4500c2d124bd79d80]
Oct-22 19:19:01.423 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:01.423 [Task submitter] INFO  nextflow.Session - [45/51b521] Submitted process > BAM_COLLAPSE (53)
Oct-22 19:19:02.427 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:02.427 [Task submitter] INFO  nextflow.Session - [9b/278c42] Submitted process > BAM_SPLIT (52)
Oct-22 19:19:02.430 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:02.430 [Task submitter] INFO  nextflow.Session - [63/46e22a] Submitted process > ADD_EMPTY_COUNTS (RNAneuro268_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:02.433 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:02.433 [Task submitter] INFO  nextflow.Session - [f7/f91d40] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro268_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:02.527 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 793; name: ADD_EMPTY_COUNTS (RNAneuro268_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/63/46e22ad558128b77e6ab7ffbca3049]
Oct-22 19:19:05.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 792; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro268_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/f91d40ce76f0c8ce4ed980fa72a3b6]
Oct-22 19:19:05.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 791; name: BAM_SPLIT (52); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/278c42492b3189c5289f455e8f228b]
Oct-22 19:19:06.584 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:06.584 [Task submitter] INFO  nextflow.Session - [01/4e49bb] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro268_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:06.587 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:06.587 [Task submitter] INFO  nextflow.Session - [54/291967] Submitted process > FEATURE_COUNT_TRNA (RNAneuro268_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:06.590 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:06.590 [Task submitter] INFO  nextflow.Session - [9e/f3b37e] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro268_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:06.593 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:06.593 [Task submitter] INFO  nextflow.Session - [4e/67f638] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro268_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:06.597 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:06.597 [Task submitter] INFO  nextflow.Session - [7c/1df615] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro268_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:07.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 795; name: FEATURE_COUNT_TRNA (RNAneuro268_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/29196791a6819ff89018c1c48c4a5f]
Oct-22 19:19:07.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 797; name: FEATURE_COUNT_NCRNA (RNAneuro268_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7c/1df6153c1a71b291d0ef4704e6d95d]
Oct-22 19:19:08.516 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 772; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro252_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/ed835a2df8d2e4cfee6713bab17f15]
Oct-22 19:19:09.519 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:09.520 [Task submitter] INFO  nextflow.Session - [8e/9d2add] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro252_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:19:10.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 794; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro268_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/4e49bbd34c60642af07f60612fca08]
Oct-22 19:19:10.668 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 796; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro268_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9e/f3b37e19e8ef2d8115c4caf7c8adea]
Oct-22 19:19:10.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 799; name: GENERATE_DEPTHFILE_STATS (RNAneuro252_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/9d2addfb4d0cf4d505105fb8897f58]
Oct-22 19:19:10.959 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:10.959 [Task submitter] INFO  nextflow.Session - [7a/b91e5b] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro268_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:19:10.962 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:10.962 [Task submitter] INFO  nextflow.Session - [ee/1951c0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro268_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:19:11.247 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 801; name: GENERATE_DEPTHFILE_STATS (RNAneuro268_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/1951c02f92ee049f6360e6d42758bc]
Oct-22 19:19:14.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 800; name: PLOT_TRNA_ALL_PLOTS (RNAneuro268_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/b91e5bb9c8c02df80cf266e21fcb1c]
Oct-22 19:19:17.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 208; name: BAM_COLLAPSE (53); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/51b52131ee32078f53894bc8d7dd56]
Oct-22 19:19:17.056 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:17.056 [Task submitter] INFO  nextflow.Session - [8f/522c89] Submitted process > BAM_COLLAPSE (54)
Oct-22 19:19:18.060 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:18.060 [Task submitter] INFO  nextflow.Session - [20/81dee7] Submitted process > BAM_SPLIT (53)
Oct-22 19:19:18.063 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:18.063 [Task submitter] INFO  nextflow.Session - [31/dbacd5] Submitted process > ADD_EMPTY_COUNTS (RNAneuro261_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:18.067 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:18.067 [Task submitter] INFO  nextflow.Session - [64/e2e04f] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro261_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:18.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 804; name: ADD_EMPTY_COUNTS (RNAneuro261_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/dbacd506ff629d9fa4343ea2b0c3d3]
Oct-22 19:19:20.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 803; name: BAM_SPLIT (53); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/20/81dee7ba9ab574608b150a492eb263]
Oct-22 19:19:20.636 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 802; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro261_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/e2e04f94bbbf796449963ffe48714a]
Oct-22 19:19:20.638 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:20.638 [Task submitter] INFO  nextflow.Session - [f7/c73bad] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro261_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:20.641 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:20.641 [Task submitter] INFO  nextflow.Session - [05/220a68] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro261_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:20.644 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:20.644 [Task submitter] INFO  nextflow.Session - [d0/cb7fa0] Submitted process > FEATURE_COUNT_TRNA (RNAneuro261_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:20.665 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:20.666 [Task submitter] INFO  nextflow.Session - [1d/5ea48c] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro261_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:20.669 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:20.669 [Task submitter] INFO  nextflow.Session - [42/e4896e] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro261_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:21.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 807; name: FEATURE_COUNT_TRNA (RNAneuro261_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/cb7fa03984c3a717605908fad10faa]
Oct-22 19:19:21.580 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 806; name: FEATURE_COUNT_NCRNA (RNAneuro261_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/5ea48cd860b8b4ebe8309730266258]
Oct-22 19:19:23.896 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 785; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro273_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/8625224a2f23162bf0c91b1ec4824d]
Oct-22 19:19:24.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 805; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro261_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/c73badb89853b5abf43ee6562440f4]
Oct-22 19:19:24.756 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:24.756 [Task submitter] INFO  nextflow.Session - [8a/0bf8cc] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro273_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:19:25.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 809; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro261_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/42/e4896e24119ba5660f5975b1687c17]
Oct-22 19:19:26.159 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:26.159 [Task submitter] INFO  nextflow.Session - [0e/30a334] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro261_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:19:26.161 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:26.161 [Task submitter] INFO  nextflow.Session - [40/011f37] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro261_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:19:26.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 810; name: GENERATE_DEPTHFILE_STATS (RNAneuro273_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8a/0bf8cced0168499564305f3ba57d53]
Oct-22 19:19:26.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 812; name: GENERATE_DEPTHFILE_STATS (RNAneuro261_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0e/30a334d4fc113437d1e458bb99bd13]
Oct-22 19:19:29.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 811; name: PLOT_TRNA_ALL_PLOTS (RNAneuro261_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/011f372230da899b970cac48e48d86]
Oct-22 19:19:41.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 209; name: BAM_COLLAPSE (54); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/522c895d6b9b66eab223423f1eec42]
Oct-22 19:19:41.324 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:41.325 [Task submitter] INFO  nextflow.Session - [e2/b9df4c] Submitted process > BAM_COLLAPSE (55)
Oct-22 19:19:42.327 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:42.327 [Task submitter] INFO  nextflow.Session - [c1/557e69] Submitted process > ADD_EMPTY_COUNTS (RNAneuro258_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:42.330 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:42.331 [Task submitter] INFO  nextflow.Session - [da/01117b] Submitted process > BAM_SPLIT (54)
Oct-22 19:19:42.333 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:42.333 [Task submitter] INFO  nextflow.Session - [63/1d1232] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro258_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:42.423 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 814; name: ADD_EMPTY_COUNTS (RNAneuro258_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/557e6992fe2098bd4945d957d2e604]
Oct-22 19:19:44.479 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 813; name: BAM_SPLIT (54); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/01117bc283f1eb739bc1b0ef38e977]
Oct-22 19:19:44.847 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 815; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro258_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/63/1d123259e89709bf23ba098ec1a469]
Oct-22 19:19:44.849 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:44.849 [Task submitter] INFO  nextflow.Session - [6a/70f7ce] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro258_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:44.851 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:44.852 [Task submitter] INFO  nextflow.Session - [11/50db31] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro258_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:44.853 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:44.854 [Task submitter] INFO  nextflow.Session - [0f/c61946] Submitted process > FEATURE_COUNT_TRNA (RNAneuro258_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:44.855 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:44.856 [Task submitter] INFO  nextflow.Session - [0e/140935] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro258_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:44.858 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:44.859 [Task submitter] INFO  nextflow.Session - [e2/4b94ac] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro258_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:45.297 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 819; name: FEATURE_COUNT_TRNA (RNAneuro258_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/c61946783273d3346bd8c758016214]
Oct-22 19:19:45.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 818; name: FEATURE_COUNT_NCRNA (RNAneuro258_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0e/140935539fe9de907ed3033090036a]
Oct-22 19:19:47.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 820; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro258_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/70f7ce00c582f3bf642cf66c82669e]
Oct-22 19:19:48.741 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 817; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro258_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/4b94aca54ea750d9a9b5ead8e3c33f]
Oct-22 19:19:49.745 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:49.745 [Task submitter] INFO  nextflow.Session - [71/c99059] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro258_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:19:49.747 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:49.747 [Task submitter] INFO  nextflow.Session - [06/9c073c] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro258_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:19:50.035 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 822; name: GENERATE_DEPTHFILE_STATS (RNAneuro258_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/c99059d79b2be8777058e32742b758]
Oct-22 19:19:53.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 210; name: BAM_COLLAPSE (55); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e2/b9df4c9cebf1bf5757b544f99d80e0]
Oct-22 19:19:53.251 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:53.251 [Task submitter] INFO  nextflow.Session - [8f/60237f] Submitted process > BAM_COLLAPSE (56)
Oct-22 19:19:54.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 798; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro268_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/67f63820217c9b9b16c7c40cf55450]
Oct-22 19:19:54.206 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:54.206 [Task submitter] INFO  nextflow.Session - [91/9cc96b] Submitted process > BAM_SPLIT (55)
Oct-22 19:19:54.208 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:54.208 [Task submitter] INFO  nextflow.Session - [75/8f1a8f] Submitted process > ADD_EMPTY_COUNTS (RNAneuro262_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:54.211 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:54.211 [Task submitter] INFO  nextflow.Session - [6d/fdaf67] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro262_trimmed_tRNAs-almost-mapped)
Oct-22 19:19:54.213 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:54.213 [Task submitter] INFO  nextflow.Session - [c9/41aa28] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro268_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:19:54.317 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 825; name: ADD_EMPTY_COUNTS (RNAneuro262_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/75/8f1a8fede78945fdbca8e150078d7d]
Oct-22 19:19:56.284 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 823; name: BAM_SPLIT (55); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/9cc96be08f6940e791e17e14001528]
Oct-22 19:19:56.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 821; name: PLOT_TRNA_ALL_PLOTS (RNAneuro258_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/06/9c073c95a62b8bfa9bc2eab6c08e23]
Oct-22 19:19:56.408 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:56.408 [Task submitter] INFO  nextflow.Session - [b5/a14d6a] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro262_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:56.410 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:56.411 [Task submitter] INFO  nextflow.Session - [4b/acbb40] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro262_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:56.414 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:56.414 [Task submitter] INFO  nextflow.Session - [0e/9125b4] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro262_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:56.417 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:56.417 [Task submitter] INFO  nextflow.Session - [12/c9cbf6] Submitted process > FEATURE_COUNT_TRNA (RNAneuro262_trimmed_accepted_hits_tRNAs)
Oct-22 19:19:57.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 824; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro262_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/fdaf675ccc5ed5b5f264b2d46c4842]
Oct-22 19:19:57.114 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:19:57.114 [Task submitter] INFO  nextflow.Session - [d4/524ffb] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro262_trimmed_accepted_hits_ncRNAs)
Oct-22 19:19:57.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 830; name: FEATURE_COUNT_TRNA (RNAneuro262_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/c9cbf6d30577639d861ee24b0d6cb7]
Oct-22 19:19:57.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 826; name: GENERATE_DEPTHFILE_STATS (RNAneuro268_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c9/41aa284253ad11a590832e8464e6ea]
Oct-22 19:19:57.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 831; name: FEATURE_COUNT_NCRNA (RNAneuro262_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/524ffba81a9b3252557b01ceedd781]
Oct-22 19:19:59.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 828; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro262_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b5/a14d6af96dec60434f4073f9d49ac7]
Oct-22 19:20:01.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 829; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro262_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0e/9125b40be18b7919a05bb3acada8c4]
Oct-22 19:20:02.457 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:02.457 [Task submitter] INFO  nextflow.Session - [fb/b49927] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro262_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:20:02.459 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:02.460 [Task submitter] INFO  nextflow.Session - [e3/57f9e9] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro262_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:20:02.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 833; name: GENERATE_DEPTHFILE_STATS (RNAneuro262_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/57f9e96d2f8a02f972bfbf32cfd539]
Oct-22 19:20:06.572 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 832; name: PLOT_TRNA_ALL_PLOTS (RNAneuro262_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/b4992779e0bc7938436452ea642016]
Oct-22 19:20:07.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 808; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro261_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/05/220a68d87a5e9c13cd7aa8c9819572]
Oct-22 19:20:08.574 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:08.574 [Task submitter] INFO  nextflow.Session - [32/46be3b] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro261_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:20:10.028 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 834; name: GENERATE_DEPTHFILE_STATS (RNAneuro261_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/46be3ba97ae9b5a2b78281568a5504]
Oct-22 19:20:23.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below
~> TaskHandler[id: 816; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro258_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/50db317a22c4f4e5ab914d921a5c12]
~> TaskHandler[id: 211; name: BAM_COLLAPSE (56); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/60237f2ea70c92d5a66af021c172f8]
~> TaskHandler[id: 827; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro262_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/acbb401fee89e9b0c3f8d70cd975a0]
Oct-22 19:20:26.558 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 211; name: BAM_COLLAPSE (56); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/60237f2ea70c92d5a66af021c172f8]
Oct-22 19:20:26.561 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:26.561 [Task submitter] INFO  nextflow.Session - [ee/2b01f7] Submitted process > BAM_COLLAPSE (57)
Oct-22 19:20:27.566 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:27.566 [Task submitter] INFO  nextflow.Session - [77/08cc3b] Submitted process > BAM_SPLIT (56)
Oct-22 19:20:27.570 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:27.570 [Task submitter] INFO  nextflow.Session - [c7/725eba] Submitted process > ADD_EMPTY_COUNTS (RNAneuro253_trimmed_tRNAs-almost-mapped)
Oct-22 19:20:27.574 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:27.574 [Task submitter] INFO  nextflow.Session - [f5/d36f4c] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro253_trimmed_tRNAs-almost-mapped)
Oct-22 19:20:27.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 836; name: ADD_EMPTY_COUNTS (RNAneuro253_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c7/725ebadd53e10f6e1c4bffb685e503]
Oct-22 19:20:30.370 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 837; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro253_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/d36f4c1011fe3ce37deecd45ee0ff4]
Oct-22 19:20:32.380 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 835; name: BAM_SPLIT (56); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/77/08cc3bec4fddaddb4baa1cad18d344]
Oct-22 19:20:33.384 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:33.384 [Task submitter] INFO  nextflow.Session - [1a/930e7c] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro253_trimmed_accepted_hits_tRNAs)
Oct-22 19:20:33.387 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:33.387 [Task submitter] INFO  nextflow.Session - [ed/7feeb4] Submitted process > FEATURE_COUNT_TRNA (RNAneuro253_trimmed_accepted_hits_tRNAs)
Oct-22 19:20:33.391 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:33.391 [Task submitter] INFO  nextflow.Session - [11/fa7218] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro253_trimmed_accepted_hits_tRNAs)
Oct-22 19:20:33.395 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:33.395 [Task submitter] INFO  nextflow.Session - [f4/945092] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro253_trimmed_accepted_hits_ncRNAs)
Oct-22 19:20:33.399 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:33.399 [Task submitter] INFO  nextflow.Session - [ad/19468c] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro253_trimmed_accepted_hits_ncRNAs)
Oct-22 19:20:33.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 839; name: FEATURE_COUNT_TRNA (RNAneuro253_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/7feeb471508e0ebafb14926b74185b]
Oct-22 19:20:34.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 841; name: FEATURE_COUNT_NCRNA (RNAneuro253_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f4/9450925dda819a1bf1f00a97b838bc]
Oct-22 19:20:34.390 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 816; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro258_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/50db317a22c4f4e5ab914d921a5c12]
Oct-22 19:20:35.394 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:35.394 [Task submitter] INFO  nextflow.Session - [de/774079] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro258_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:20:36.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 843; name: GENERATE_DEPTHFILE_STATS (RNAneuro258_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/de/774079d63db0956aae35c959a82554]
Oct-22 19:20:37.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 838; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro253_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/fa72186c4f3931a11306a70430385d]
Oct-22 19:20:38.671 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 840; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro253_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/930e7caf104b451f9255b2c393470c]
Oct-22 19:20:38.674 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:38.675 [Task submitter] INFO  nextflow.Session - [4b/ceef84] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro253_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:20:38.678 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:38.678 [Task submitter] INFO  nextflow.Session - [6f/6a5ce2] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro253_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:20:38.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 845; name: GENERATE_DEPTHFILE_STATS (RNAneuro253_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/ceef844b2c5e19f07986708614069f]
Oct-22 19:20:42.590 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 844; name: PLOT_TRNA_ALL_PLOTS (RNAneuro253_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/6a5ce2a9a7beacc88528737a62e7bf]
Oct-22 19:20:43.265 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 827; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro262_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4b/acbb401fee89e9b0c3f8d70cd975a0]
Oct-22 19:20:44.269 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:20:44.269 [Task submitter] INFO  nextflow.Session - [ff/2f3ce0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro262_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:20:44.270 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 19 -- tasks to be submitted are shown below
~> TaskHandler[id: 213; name: BAM_COLLAPSE (58); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/0c52c9254db3e8bdcc63110f77b6a3]
~> TaskHandler[id: 214; name: BAM_COLLAPSE (59); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d6/69d9f42d102eb33ffe102f76f1d1c1]
~> TaskHandler[id: 215; name: BAM_COLLAPSE (60); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/da583f5174ae499dccad6aadc2cb74]
~> TaskHandler[id: 216; name: BAM_COLLAPSE (61); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/00e50e850eee1a8b621cc575b15750]
~> TaskHandler[id: 217; name: BAM_COLLAPSE (62); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/af/c2546c1c5294e37057aef69236345a]
~> TaskHandler[id: 218; name: BAM_COLLAPSE (63); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b9/5867db98550554caf5e1b71ae19e32]
~> TaskHandler[id: 219; name: BAM_COLLAPSE (64); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/44e0ff19a3d397ec7d7609be217671]
~> TaskHandler[id: 220; name: BAM_COLLAPSE (65); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/96/a90075174cd67d4697f51f8893e958]
~> TaskHandler[id: 221; name: BAM_COLLAPSE (66); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/7b9717fbc73cb5d4895e924503604a]
~> TaskHandler[id: 222; name: BAM_COLLAPSE (67); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/3864f54e14e8bad95477fd3f61f953]
.. remaining tasks omitted.
Oct-22 19:20:45.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 846; name: GENERATE_DEPTHFILE_STATS (RNAneuro262_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/2f3ce012c7df20b26be5cc5a90fd52]
Oct-22 19:21:03.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 212; name: BAM_COLLAPSE (57); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/2b01f70cb31b5d0043b93d3514f8e5]
Oct-22 19:21:03.786 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:03.786 [Task submitter] INFO  nextflow.Session - [3a/0c52c9] Submitted process > BAM_COLLAPSE (58)
Oct-22 19:21:04.790 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:04.791 [Task submitter] INFO  nextflow.Session - [a1/02098b] Submitted process > BAM_SPLIT (57)
Oct-22 19:21:04.794 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:04.795 [Task submitter] INFO  nextflow.Session - [e4/0f7f10] Submitted process > ADD_EMPTY_COUNTS (RNAneuro257_trimmed_tRNAs-almost-mapped)
Oct-22 19:21:04.799 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:04.799 [Task submitter] INFO  nextflow.Session - [5c/acca7e] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro257_trimmed_tRNAs-almost-mapped)
Oct-22 19:21:04.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 847; name: ADD_EMPTY_COUNTS (RNAneuro257_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/0f7f106d7f865322cea96b90f806f5]
Oct-22 19:21:06.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 848; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro257_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/acca7e87886e4a848b1dd75998a36a]
Oct-22 19:21:07.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 849; name: BAM_SPLIT (57); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a1/02098b051458d7438b9dc5ba44cd9c]
Oct-22 19:21:08.058 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:08.058 [Task submitter] INFO  nextflow.Session - [90/05d37a] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro257_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:08.062 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:08.062 [Task submitter] INFO  nextflow.Session - [01/d3d163] Submitted process > FEATURE_COUNT_TRNA (RNAneuro257_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:08.066 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:08.066 [Task submitter] INFO  nextflow.Session - [af/cb3f84] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro257_trimmed_accepted_hits_ncRNAs)
Oct-22 19:21:08.070 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:08.070 [Task submitter] INFO  nextflow.Session - [80/22bf5c] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro257_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:08.073 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:08.073 [Task submitter] INFO  nextflow.Session - [e4/ee46d5] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro257_trimmed_accepted_hits_ncRNAs)
Oct-22 19:21:08.456 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 853; name: FEATURE_COUNT_TRNA (RNAneuro257_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/d3d1637383266d8ff6d94f18e91ed4]
Oct-22 19:21:08.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 854; name: FEATURE_COUNT_NCRNA (RNAneuro257_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/ee46d5eb03c20b8409f395851cae72]
Oct-22 19:21:09.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 213; name: BAM_COLLAPSE (58); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/0c52c9254db3e8bdcc63110f77b6a3]
Oct-22 19:21:09.042 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:09.042 [Task submitter] INFO  nextflow.Session - [d6/69d9f4] Submitted process > BAM_COLLAPSE (59)
Oct-22 19:21:10.046 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:10.047 [Task submitter] INFO  nextflow.Session - [d2/685048] Submitted process > BAM_SPLIT (58)
Oct-22 19:21:10.050 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:10.050 [Task submitter] INFO  nextflow.Session - [5e/8b7cb8] Submitted process > ADD_EMPTY_COUNTS (RNAneuro276_trimmed_tRNAs-almost-mapped)
Oct-22 19:21:10.054 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:10.054 [Task submitter] INFO  nextflow.Session - [55/71eca2] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro276_trimmed_tRNAs-almost-mapped)
Oct-22 19:21:10.134 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 855; name: ADD_EMPTY_COUNTS (RNAneuro276_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/8b7cb8c7b2d00eb29aaffdf405fad0]
Oct-22 19:21:12.017 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 856; name: BAM_SPLIT (58); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d2/6850485ce68bc87e0bc5b8106ea2ba]
Oct-22 19:21:12.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 851; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro257_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/80/22bf5c74ca6831912a63f7f6a67e66]
Oct-22 19:21:12.868 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:12.868 [Task submitter] INFO  nextflow.Session - [e6/fc03c8] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro276_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:12.871 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:12.871 [Task submitter] INFO  nextflow.Session - [8d/86f790] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro276_trimmed_accepted_hits_ncRNAs)
Oct-22 19:21:12.873 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:12.873 [Task submitter] INFO  nextflow.Session - [6f/5fc7c6] Submitted process > FEATURE_COUNT_TRNA (RNAneuro276_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:12.876 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:12.876 [Task submitter] INFO  nextflow.Session - [49/42ff51] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro276_trimmed_accepted_hits_ncRNAs)
Oct-22 19:21:13.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 857; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro276_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/71eca22878190a3ab868415e73963b]
Oct-22 19:21:13.150 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:13.150 [Task submitter] INFO  nextflow.Session - [d0/8c5bbd] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro276_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:13.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 860; name: FEATURE_COUNT_TRNA (RNAneuro276_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6f/5fc7c6c777e9e4aeeaf537301488bb]
Oct-22 19:21:13.221 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:13.222 [Task submitter] INFO  nextflow.Session - [0a/6f1e20] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro257_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:21:13.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 852; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro257_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/05d37ace8709a79021141fdf711c7e]
Oct-22 19:21:13.232 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:13.232 [Task submitter] INFO  nextflow.Session - [98/aa5ceb] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro257_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:21:13.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 862; name: FEATURE_COUNT_NCRNA (RNAneuro276_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/86f790c45e933966a23fa1b1c55f49]
Oct-22 19:21:13.532 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 864; name: GENERATE_DEPTHFILE_STATS (RNAneuro257_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/6f1e201b25e6d64af9d70078a0beb4]
Oct-22 19:21:16.187 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 858; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro276_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/fc03c8d5599b853826b53be43b3f9c]
Oct-22 19:21:16.895 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 859; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro276_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/8c5bbdb080306a4ccc92f77cb6311d]
Oct-22 19:21:17.315 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 863; name: PLOT_TRNA_ALL_PLOTS (RNAneuro257_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/aa5ceb83a0cc6c0561f0ef6bc32436]
Oct-22 19:21:17.319 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:17.319 [Task submitter] INFO  nextflow.Session - [63/fa6a9f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro276_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:21:17.322 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:17.323 [Task submitter] INFO  nextflow.Session - [a7/1b2e6a] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro276_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:21:17.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 866; name: GENERATE_DEPTHFILE_STATS (RNAneuro276_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/63/fa6a9ffa73557233c61d6ec0a6c1d8]
Oct-22 19:21:19.563 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 842; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro253_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ad/19468c0c7b0b670787105f43e25bea]
Oct-22 19:21:20.566 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:20.566 [Task submitter] INFO  nextflow.Session - [e6/bd5cdc] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro253_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:21:21.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 865; name: PLOT_TRNA_ALL_PLOTS (RNAneuro276_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/1b2e6a1cf12a8ce1f0295fbbf20c04]
Oct-22 19:21:21.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 867; name: GENERATE_DEPTHFILE_STATS (RNAneuro253_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/bd5cdcc0e31a136c0707e309bd5f83]
Oct-22 19:21:44.897 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 214; name: BAM_COLLAPSE (59); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d6/69d9f42d102eb33ffe102f76f1d1c1]
Oct-22 19:21:44.900 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:44.900 [Task submitter] INFO  nextflow.Session - [bf/da583f] Submitted process > BAM_COLLAPSE (60)
Oct-22 19:21:45.904 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:45.905 [Task submitter] INFO  nextflow.Session - [36/cd99b6] Submitted process > BAM_SPLIT (59)
Oct-22 19:21:45.908 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:45.908 [Task submitter] INFO  nextflow.Session - [22/b67974] Submitted process > ADD_EMPTY_COUNTS (RNAneuro275_trimmed_tRNAs-almost-mapped)
Oct-22 19:21:45.912 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:45.912 [Task submitter] INFO  nextflow.Session - [6d/39b834] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro275_trimmed_tRNAs-almost-mapped)
Oct-22 19:21:46.007 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 868; name: ADD_EMPTY_COUNTS (RNAneuro275_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/22/b679744e52f535da3d89deac9bfc26]
Oct-22 19:21:48.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 869; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro275_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/39b8342b17b538e480040d9d7d5080]
Oct-22 19:21:48.107 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 870; name: BAM_SPLIT (59); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/cd99b67d934d40405edd010dc1a947]
Oct-22 19:21:49.110 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:49.111 [Task submitter] INFO  nextflow.Session - [f5/8d8dae] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro275_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:49.115 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:49.115 [Task submitter] INFO  nextflow.Session - [de/6c68a8] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro275_trimmed_accepted_hits_ncRNAs)
Oct-22 19:21:49.118 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:49.119 [Task submitter] INFO  nextflow.Session - [6b/007c12] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro275_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:49.122 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:49.122 [Task submitter] INFO  nextflow.Session - [a8/bfef24] Submitted process > FEATURE_COUNT_TRNA (RNAneuro275_trimmed_accepted_hits_tRNAs)
Oct-22 19:21:49.125 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:49.126 [Task submitter] INFO  nextflow.Session - [49/305876] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro275_trimmed_accepted_hits_ncRNAs)
Oct-22 19:21:49.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 872; name: FEATURE_COUNT_TRNA (RNAneuro275_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a8/bfef2440667bc04c7f960fbef4c490]
Oct-22 19:21:49.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 873; name: FEATURE_COUNT_NCRNA (RNAneuro275_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/49/305876799cb4960056399da6ca027d]
Oct-22 19:21:53.045 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 874; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro275_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6b/007c126dfba683a2044e388751ffb6]
Oct-22 19:21:53.605 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 875; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro275_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/8d8dae38a2c9b9cea8cf2487a3538d]
Oct-22 19:21:53.608 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:53.608 [Task submitter] INFO  nextflow.Session - [cf/f8a67e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro275_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:21:53.612 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:53.613 [Task submitter] INFO  nextflow.Session - [39/e13799] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro275_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:21:53.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 876; name: GENERATE_DEPTHFILE_STATS (RNAneuro275_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/f8a67e964341ad3aed52e034717710]
Oct-22 19:21:56.207 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 850; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro257_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/af/cb3f84433db48b9ae2d5631dd0ed25]
Oct-22 19:21:57.211 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:57.211 [Task submitter] INFO  nextflow.Session - [34/d51b4b] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro257_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:21:57.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 877; name: PLOT_TRNA_ALL_PLOTS (RNAneuro275_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/39/e137997955001c94a2694e2bb8246e]
Oct-22 19:21:59.593 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 215; name: BAM_COLLAPSE (60); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/da583f5174ae499dccad6aadc2cb74]
Oct-22 19:21:59.597 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:21:59.598 [Task submitter] INFO  nextflow.Session - [e4/00e50e] Submitted process > BAM_COLLAPSE (61)
Oct-22 19:22:00.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 878; name: GENERATE_DEPTHFILE_STATS (RNAneuro257_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/d51b4b9cfa9240af52bc54e793d7d2]
Oct-22 19:22:00.478 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:00.478 [Task submitter] INFO  nextflow.Session - [83/3d5828] Submitted process > BAM_SPLIT (60)
Oct-22 19:22:00.481 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:00.481 [Task submitter] INFO  nextflow.Session - [3d/31544e] Submitted process > ADD_EMPTY_COUNTS (RNAneuro266_trimmed_tRNAs-almost-mapped)
Oct-22 19:22:00.485 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:00.485 [Task submitter] INFO  nextflow.Session - [51/223314] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro266_trimmed_tRNAs-almost-mapped)
Oct-22 19:22:00.567 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 881; name: ADD_EMPTY_COUNTS (RNAneuro266_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3d/31544e8451f53bb48274f46cdcc6a7]
Oct-22 19:22:00.720 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 861; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro276_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/49/42ff51cdcd91c70e799b25a471b277]
Oct-22 19:22:01.735 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:01.735 [Task submitter] INFO  nextflow.Session - [b1/e30ae5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro276_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:22:02.668 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 879; name: BAM_SPLIT (60); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/3d58284c9083d258efb6009449481f]
Oct-22 19:22:02.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 880; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro266_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/51/2233146573cfcc28df1f63bd7d392f]
Oct-22 19:22:02.856 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:02.856 [Task submitter] INFO  nextflow.Session - [60/3b04c8] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro266_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:02.860 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:02.860 [Task submitter] INFO  nextflow.Session - [cf/f0db56] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro266_trimmed_accepted_hits_ncRNAs)
Oct-22 19:22:02.864 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:02.864 [Task submitter] INFO  nextflow.Session - [6d/205f46] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro266_trimmed_accepted_hits_ncRNAs)
Oct-22 19:22:02.871 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:02.872 [Task submitter] INFO  nextflow.Session - [12/4b51c6] Submitted process > FEATURE_COUNT_TRNA (RNAneuro266_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:02.875 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:02.875 [Task submitter] INFO  nextflow.Session - [be/03db30] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro266_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:03.558 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 884; name: FEATURE_COUNT_TRNA (RNAneuro266_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/4b51c6477b7d34b00c9190538e6080]
Oct-22 19:22:03.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 886; name: FEATURE_COUNT_NCRNA (RNAneuro266_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/f0db560e8932ae7af6ff63b8f275e2]
Oct-22 19:22:04.382 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 882; name: GENERATE_DEPTHFILE_STATS (RNAneuro276_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b1/e30ae558dab0646a0127122e838fd9]
Oct-22 19:22:07.071 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 885; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro266_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/60/3b04c8503042ac3d1085d26f20c615]
Oct-22 19:22:07.344 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 887; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro266_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/03db301455f7e5be0168889ee43f07]
Oct-22 19:22:08.348 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:08.348 [Task submitter] INFO  nextflow.Session - [7d/a80b46] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro266_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:22:08.351 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:08.352 [Task submitter] INFO  nextflow.Session - [d7/67c836] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro266_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:22:08.612 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 889; name: GENERATE_DEPTHFILE_STATS (RNAneuro266_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/a80b468997e7771b3eeb48ea579eb3]
Oct-22 19:22:12.255 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 888; name: PLOT_TRNA_ALL_PLOTS (RNAneuro266_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/67c836aeeeffb80491d59c0e49f4d9]
Oct-22 19:22:20.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 216; name: BAM_COLLAPSE (61); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/00e50e850eee1a8b621cc575b15750]
Oct-22 19:22:20.496 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:20.496 [Task submitter] INFO  nextflow.Session - [af/c2546c] Submitted process > BAM_COLLAPSE (62)
Oct-22 19:22:21.500 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:21.500 [Task submitter] INFO  nextflow.Session - [2a/861992] Submitted process > BAM_SPLIT (61)
Oct-22 19:22:21.504 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:21.504 [Task submitter] INFO  nextflow.Session - [bb/454c1a] Submitted process > ADD_EMPTY_COUNTS (RNAneuro278_trimmed_tRNAs-almost-mapped)
Oct-22 19:22:21.507 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:21.507 [Task submitter] INFO  nextflow.Session - [49/a28d65] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro278_trimmed_tRNAs-almost-mapped)
Oct-22 19:22:21.596 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 891; name: ADD_EMPTY_COUNTS (RNAneuro278_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/454c1a9b77b6eab45ab29867f955b9]
Oct-22 19:22:24.377 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 892; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro278_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/49/a28d651ea5854e26a1ee65e695352f]
Oct-22 19:22:24.773 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 890; name: BAM_SPLIT (61); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2a/8619921c9c2799cc8f0be1384eb606]
Oct-22 19:22:25.776 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:25.777 [Task submitter] INFO  nextflow.Session - [cd/64f48c] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro278_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:25.781 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:25.782 [Task submitter] INFO  nextflow.Session - [72/4b8b36] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro278_trimmed_accepted_hits_ncRNAs)
Oct-22 19:22:25.785 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:25.785 [Task submitter] INFO  nextflow.Session - [d4/0dc12b] Submitted process > FEATURE_COUNT_TRNA (RNAneuro278_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:25.789 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:25.789 [Task submitter] INFO  nextflow.Session - [fe/b96b80] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro278_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:25.792 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:25.792 [Task submitter] INFO  nextflow.Session - [00/f22b54] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro278_trimmed_accepted_hits_ncRNAs)
Oct-22 19:22:26.705 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 894; name: FEATURE_COUNT_TRNA (RNAneuro278_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/0dc12b0f41597d3141be09d5445c64]
Oct-22 19:22:26.779 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 897; name: FEATURE_COUNT_NCRNA (RNAneuro278_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/00/f22b542d876f0385cbcb37d7dde916]
Oct-22 19:22:29.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 893; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro278_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cd/64f48c93ba0124f2acb7060f9d38fd]
Oct-22 19:22:30.370 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 896; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro278_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/b96b80feab2049b22ea655797d5ce0]
Oct-22 19:22:31.374 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:31.374 [Task submitter] INFO  nextflow.Session - [61/58a4d2] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro278_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:22:31.378 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:31.378 [Task submitter] INFO  nextflow.Session - [fb/932ad8] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro278_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:22:31.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 899; name: GENERATE_DEPTHFILE_STATS (RNAneuro278_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/932ad826311f5063f82c7e3f9a248b]
Oct-22 19:22:35.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 898; name: PLOT_TRNA_ALL_PLOTS (RNAneuro278_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/58a4d2a62b1438c7608d1490f9d033]
Oct-22 19:22:35.576 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 871; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro275_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/de/6c68a857a48afac332ec856b909a5e]
Oct-22 19:22:36.580 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:36.580 [Task submitter] INFO  nextflow.Session - [fd/781bc7] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro275_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:22:37.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 900; name: GENERATE_DEPTHFILE_STATS (RNAneuro275_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/781bc7324c0ebfad9ba06f666322fe]
Oct-22 19:22:41.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 217; name: BAM_COLLAPSE (62); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/af/c2546c1c5294e37057aef69236345a]
Oct-22 19:22:41.041 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:41.041 [Task submitter] INFO  nextflow.Session - [b9/5867db] Submitted process > BAM_COLLAPSE (63)
Oct-22 19:22:42.046 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:42.046 [Task submitter] INFO  nextflow.Session - [35/71c758] Submitted process > BAM_SPLIT (62)
Oct-22 19:22:42.050 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:42.050 [Task submitter] INFO  nextflow.Session - [38/467400] Submitted process > ADD_EMPTY_COUNTS (RNAneuro274_trimmed_tRNAs-almost-mapped)
Oct-22 19:22:42.053 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:42.054 [Task submitter] INFO  nextflow.Session - [21/1bb929] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro274_trimmed_tRNAs-almost-mapped)
Oct-22 19:22:42.138 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 903; name: ADD_EMPTY_COUNTS (RNAneuro274_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/46740049c19087a635672351d4964b]
Oct-22 19:22:44.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 901; name: BAM_SPLIT (62); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/71c7583acbf282857d3f8557ef2444]
Oct-22 19:22:44.444 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 902; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro274_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/21/1bb929721e6fad5301a7ebe62f39d5]
Oct-22 19:22:44.447 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:44.448 [Task submitter] INFO  nextflow.Session - [8e/85b82b] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro274_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:44.451 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:44.451 [Task submitter] INFO  nextflow.Session - [ed/945efa] Submitted process > FEATURE_COUNT_TRNA (RNAneuro274_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:44.454 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:44.454 [Task submitter] INFO  nextflow.Session - [85/69a0b7] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro274_trimmed_accepted_hits_ncRNAs)
Oct-22 19:22:44.457 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:44.457 [Task submitter] INFO  nextflow.Session - [35/fc21f1] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro274_trimmed_accepted_hits_tRNAs)
Oct-22 19:22:44.460 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:44.460 [Task submitter] INFO  nextflow.Session - [dd/ed981b] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro274_trimmed_accepted_hits_ncRNAs)
Oct-22 19:22:45.124 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 904; name: FEATURE_COUNT_TRNA (RNAneuro274_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/945efa09aee8b79d57f08236190038]
Oct-22 19:22:45.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 907; name: FEATURE_COUNT_NCRNA (RNAneuro274_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/85/69a0b72ada9b153c6bb69778889b6d]
Oct-22 19:22:47.954 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 906; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro274_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/85b82b619addaa30bedef4382631b2]
Oct-22 19:22:48.527 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 908; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro274_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/35/fc21f129da89a6d77c58e67560231f]
Oct-22 19:22:49.530 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:49.530 [Task submitter] INFO  nextflow.Session - [59/0c2adb] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro274_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:22:49.534 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:49.534 [Task submitter] INFO  nextflow.Session - [e1/f4f499] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro274_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:22:49.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 910; name: GENERATE_DEPTHFILE_STATS (RNAneuro274_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e1/f4f4995cc1499ab92978d2d56294ae]
Oct-22 19:22:50.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 883; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro266_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/205f465c7b7b93006dc0cce782a0b9]
Oct-22 19:22:51.161 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:22:51.161 [Task submitter] INFO  nextflow.Session - [0c/de1983] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro266_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:22:52.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 911; name: GENERATE_DEPTHFILE_STATS (RNAneuro266_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0c/de1983365181194b6f52207ed74aea]
Oct-22 19:22:53.474 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 909; name: PLOT_TRNA_ALL_PLOTS (RNAneuro274_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/59/0c2adb14a320e9b5b25a07e69f8772]
Oct-22 19:23:02.417 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 218; name: BAM_COLLAPSE (63); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b9/5867db98550554caf5e1b71ae19e32]
Oct-22 19:23:02.420 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:02.420 [Task submitter] INFO  nextflow.Session - [9d/44e0ff] Submitted process > BAM_COLLAPSE (64)
Oct-22 19:23:03.426 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:03.426 [Task submitter] INFO  nextflow.Session - [f0/fba918] Submitted process > BAM_SPLIT (63)
Oct-22 19:23:03.431 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:03.431 [Task submitter] INFO  nextflow.Session - [d3/199647] Submitted process > ADD_EMPTY_COUNTS (RNAneuro280_trimmed_tRNAs-almost-mapped)
Oct-22 19:23:03.436 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:03.436 [Task submitter] INFO  nextflow.Session - [29/d730f4] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro280_trimmed_tRNAs-almost-mapped)
Oct-22 19:23:03.914 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 914; name: ADD_EMPTY_COUNTS (RNAneuro280_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/19964767c74ad91f00b6ebed4f4f54]
Oct-22 19:23:06.424 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 913; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro280_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/29/d730f49fa0c4f899ee88e38ce2a9ae]
Oct-22 19:23:06.836 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 912; name: BAM_SPLIT (63); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f0/fba9181f2946b72016846b8a8c2078]
Oct-22 19:23:07.840 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:07.840 [Task submitter] INFO  nextflow.Session - [44/a3f526] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro280_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:07.845 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:07.845 [Task submitter] INFO  nextflow.Session - [f6/5dbb25] Submitted process > FEATURE_COUNT_TRNA (RNAneuro280_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:07.848 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:07.848 [Task submitter] INFO  nextflow.Session - [7f/90f095] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro280_trimmed_accepted_hits_ncRNAs)
Oct-22 19:23:07.852 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:07.852 [Task submitter] INFO  nextflow.Session - [40/6ce654] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro280_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:07.855 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:07.856 [Task submitter] INFO  nextflow.Session - [8a/8a310e] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro280_trimmed_accepted_hits_ncRNAs)
Oct-22 19:23:08.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 916; name: FEATURE_COUNT_TRNA (RNAneuro280_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f6/5dbb250e35c12fc4cc346980187ada]
Oct-22 19:23:08.234 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 918; name: FEATURE_COUNT_NCRNA (RNAneuro280_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/90f0955b80e0086b3e3f49e04b921c]
Oct-22 19:23:11.185 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 219; name: BAM_COLLAPSE (64); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/44e0ff19a3d397ec7d7609be217671]
Oct-22 19:23:11.187 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:11.188 [Task submitter] INFO  nextflow.Session - [96/a90075] Submitted process > BAM_COLLAPSE (65)
Oct-22 19:23:11.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 915; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro280_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/a3f5269dbcb2fe2ab750c7034c5bce]
Oct-22 19:23:11.204 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:11.204 [Task submitter] INFO  nextflow.Session - [bb/4eee6d] Submitted process > BAM_SPLIT (64)
Oct-22 19:23:11.206 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:11.207 [Task submitter] INFO  nextflow.Session - [88/7a090f] Submitted process > ADD_EMPTY_COUNTS (RNAneuro282_trimmed_tRNAs-almost-mapped)
Oct-22 19:23:11.209 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:11.209 [Task submitter] INFO  nextflow.Session - [e7/a8df01] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro282_trimmed_tRNAs-almost-mapped)
Oct-22 19:23:11.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 922; name: ADD_EMPTY_COUNTS (RNAneuro282_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/88/7a090fd4f1c4b48f8ecdebaf5c8a01]
Oct-22 19:23:13.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 919; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro280_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/40/6ce65416ca746e9b10e026b0c0a247]
Oct-22 19:23:13.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 921; name: BAM_SPLIT (64); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/4eee6db709592d4b23ff18e8979ac3]
Oct-22 19:23:13.217 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:13.217 [Task submitter] INFO  nextflow.Session - [9c/012a5e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro280_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:23:13.219 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:13.219 [Task submitter] INFO  nextflow.Session - [2c/a2d481] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro280_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:23:13.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 920; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro282_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e7/a8df01d1696154f2f2e00044306489]
Oct-22 19:23:13.407 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:13.407 [Task submitter] INFO  nextflow.Session - [24/2ce729] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro282_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:13.409 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:13.409 [Task submitter] INFO  nextflow.Session - [54/f2bb53] Submitted process > FEATURE_COUNT_TRNA (RNAneuro282_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:13.412 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:13.412 [Task submitter] INFO  nextflow.Session - [9b/3a341c] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro282_trimmed_accepted_hits_ncRNAs)
Oct-22 19:23:14.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 925; name: FEATURE_COUNT_TRNA (RNAneuro282_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/f2bb53cbc0a5d7667dbcf25a2465ad]
Oct-22 19:23:14.072 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:14.072 [Task submitter] INFO  nextflow.Session - [05/853b36] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro282_trimmed_accepted_hits_ncRNAs)
Oct-22 19:23:14.117 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 923; name: GENERATE_DEPTHFILE_STATS (RNAneuro280_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/012a5e23ecace879d8f658b6978468]
Oct-22 19:23:14.119 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:14.120 [Task submitter] INFO  nextflow.Session - [5b/eaa0c8] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro282_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:14.176 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 926; name: FEATURE_COUNT_NCRNA (RNAneuro282_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/3a341c73ab8ab5e202ac32113e19c8]
Oct-22 19:23:15.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 895; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro278_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/72/4b8b36ec5694114601b6dbeb6a45ad]
Oct-22 19:23:16.924 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:16.924 [Task submitter] INFO  nextflow.Session - [85/f685b7] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro278_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:23:17.143 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 929; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro282_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/2ce7298767af1b3d6ba8cb46a2a21e]
Oct-22 19:23:18.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 924; name: PLOT_TRNA_ALL_PLOTS (RNAneuro280_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/a2d481823fab893dbf8fcaa9f3e085]
Oct-22 19:23:18.340 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 928; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro282_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5b/eaa0c89741b8836971dfcc6a9f6631]
Oct-22 19:23:18.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 930; name: GENERATE_DEPTHFILE_STATS (RNAneuro278_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/85/f685b7ff957a3a3e07ec99b12be00d]
Oct-22 19:23:18.396 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:18.396 [Task submitter] INFO  nextflow.Session - [64/b62b86] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro282_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:23:18.399 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:18.399 [Task submitter] INFO  nextflow.Session - [2e/c3e311] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro282_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:23:18.664 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 932; name: GENERATE_DEPTHFILE_STATS (RNAneuro282_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/b62b866c9aa7bd77e176c210735dae]
Oct-22 19:23:22.275 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 931; name: PLOT_TRNA_ALL_PLOTS (RNAneuro282_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/c3e311ea51c901a1408db52b9644be]
Oct-22 19:23:32.135 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 905; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro274_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dd/ed981b6fa46c9116d565970791ce5d]
Oct-22 19:23:33.138 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:33.138 [Task submitter] INFO  nextflow.Session - [8f/5ee16f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro274_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:23:34.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 933; name: GENERATE_DEPTHFILE_STATS (RNAneuro274_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8f/5ee16f4e22fdf624b28278080c71f3]
Oct-22 19:23:41.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 220; name: BAM_COLLAPSE (65); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/96/a90075174cd67d4697f51f8893e958]
Oct-22 19:23:41.465 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:41.466 [Task submitter] INFO  nextflow.Session - [6d/7b9717] Submitted process > BAM_COLLAPSE (66)
Oct-22 19:23:42.470 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:42.470 [Task submitter] INFO  nextflow.Session - [3f/7a30a1] Submitted process > BAM_SPLIT (65)
Oct-22 19:23:42.474 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:42.474 [Task submitter] INFO  nextflow.Session - [60/705aae] Submitted process > ADD_EMPTY_COUNTS (RNAneuro284_trimmed_tRNAs-almost-mapped)
Oct-22 19:23:42.477 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:42.478 [Task submitter] INFO  nextflow.Session - [c0/811d8f] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro284_trimmed_tRNAs-almost-mapped)
Oct-22 19:23:42.569 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 936; name: ADD_EMPTY_COUNTS (RNAneuro284_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/60/705aaeb86465f77e39301d26753769]
Oct-22 19:23:44.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 935; name: BAM_SPLIT (65); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3f/7a30a1abb9e62b72614448d97a4a62]
Oct-22 19:23:44.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 934; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro284_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c0/811d8f6f9aa93d9eaa00ae16cf0375]
Oct-22 19:23:44.983 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:44.983 [Task submitter] INFO  nextflow.Session - [10/1e6a21] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro284_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:44.987 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:44.987 [Task submitter] INFO  nextflow.Session - [3d/82d9de] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro284_trimmed_accepted_hits_ncRNAs)
Oct-22 19:23:44.991 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:44.991 [Task submitter] INFO  nextflow.Session - [e3/34d412] Submitted process > FEATURE_COUNT_TRNA (RNAneuro284_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:44.995 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:44.995 [Task submitter] INFO  nextflow.Session - [dc/252511] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro284_trimmed_accepted_hits_ncRNAs)
Oct-22 19:23:45.001 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:45.002 [Task submitter] INFO  nextflow.Session - [ac/8e3950] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro284_trimmed_accepted_hits_tRNAs)
Oct-22 19:23:45.698 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 940; name: FEATURE_COUNT_TRNA (RNAneuro284_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/34d412fab650302790edb98b20cc53]
Oct-22 19:23:45.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 937; name: FEATURE_COUNT_NCRNA (RNAneuro284_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3d/82d9de849aa42348c16318a36664ee]
Oct-22 19:23:48.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 938; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro284_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/1e6a210f1ea38d690a8738914ee1da]
Oct-22 19:23:49.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 939; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro284_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ac/8e395027613aa66d38b706c792b78a]
Oct-22 19:23:50.161 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:50.161 [Task submitter] INFO  nextflow.Session - [b0/705606] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro284_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:23:50.165 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:50.165 [Task submitter] INFO  nextflow.Session - [d7/7d5cc0] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro284_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:23:50.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 942; name: GENERATE_DEPTHFILE_STATS (RNAneuro284_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b0/7056069a622258ddf370ff760d65e3]
Oct-22 19:23:54.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 943; name: PLOT_TRNA_ALL_PLOTS (RNAneuro284_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/7d5cc07eea0a0d85b6f861b27ace87]
Oct-22 19:23:54.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 917; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro280_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8a/8a310ebc66c3ac33baea5c5953c0be]
Oct-22 19:23:55.927 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:23:55.928 [Task submitter] INFO  nextflow.Session - [e4/bbd77a] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro280_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:23:57.352 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 944; name: GENERATE_DEPTHFILE_STATS (RNAneuro280_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/bbd77a0b10105c00638e1bcdc7c802]
Oct-22 19:24:00.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 927; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro282_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/05/853b36f9ffa3964114bf1bb75f6485]
Oct-22 19:24:01.134 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:01.135 [Task submitter] INFO  nextflow.Session - [43/dcb82e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro282_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:24:02.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 945; name: GENERATE_DEPTHFILE_STATS (RNAneuro282_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/dcb82e9fdd6d5d86ddefed108b6700]
Oct-22 19:24:23.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 221; name: BAM_COLLAPSE (66); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6d/7b9717fbc73cb5d4895e924503604a]
Oct-22 19:24:23.461 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:23.462 [Task submitter] INFO  nextflow.Session - [c1/3864f5] Submitted process > BAM_COLLAPSE (67)
Oct-22 19:24:24.557 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:24.557 [Task submitter] INFO  nextflow.Session - [7f/7bad39] Submitted process > BAM_SPLIT (66)
Oct-22 19:24:24.560 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:24.561 [Task submitter] INFO  nextflow.Session - [ef/09b73b] Submitted process > ADD_EMPTY_COUNTS (RNAneuro286_trimmed_tRNAs-almost-mapped)
Oct-22 19:24:24.564 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:24.564 [Task submitter] INFO  nextflow.Session - [46/eff127] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro286_trimmed_tRNAs-almost-mapped)
Oct-22 19:24:24.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 948; name: ADD_EMPTY_COUNTS (RNAneuro286_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ef/09b73b27cbce092b2a19cfb0fb870b]
Oct-22 19:24:26.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 947; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro286_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/46/eff1278606412d0a4b9b18284a7605]
Oct-22 19:24:28.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 946; name: BAM_SPLIT (66); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/7bad39ba7038ad04d430829deec463]
Oct-22 19:24:29.420 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:29.421 [Task submitter] INFO  nextflow.Session - [34/d12bea] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro286_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:29.425 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:29.425 [Task submitter] INFO  nextflow.Session - [88/8c7f31] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro286_trimmed_accepted_hits_ncRNAs)
Oct-22 19:24:29.429 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:29.429 [Task submitter] INFO  nextflow.Session - [45/ce07ea] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro286_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:29.433 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:29.433 [Task submitter] INFO  nextflow.Session - [dc/e91173] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro286_trimmed_accepted_hits_ncRNAs)
Oct-22 19:24:29.437 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:29.437 [Task submitter] INFO  nextflow.Session - [2f/74fd55] Submitted process > FEATURE_COUNT_TRNA (RNAneuro286_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:29.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 952; name: FEATURE_COUNT_TRNA (RNAneuro286_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2f/74fd5570979612b5e4fe4c7229f0c2]
Oct-22 19:24:29.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 953; name: FEATURE_COUNT_NCRNA (RNAneuro286_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/e91173b50e0a65941cff1439b9fb12]
Oct-22 19:24:31.027 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 222; name: BAM_COLLAPSE (67); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/3864f54e14e8bad95477fd3f61f953]
Oct-22 19:24:31.030 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:31.031 [Task submitter] INFO  nextflow.Session - [f2/ba6ccf] Submitted process > BAM_COLLAPSE (68)
Oct-22 19:24:32.035 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:32.035 [Task submitter] INFO  nextflow.Session - [c2/38ff87] Submitted process > BAM_SPLIT (67)
Oct-22 19:24:32.039 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:32.039 [Task submitter] INFO  nextflow.Session - [91/8ab40b] Submitted process > ADD_EMPTY_COUNTS (RNAneuro263_trimmed_tRNAs-almost-mapped)
Oct-22 19:24:32.043 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:32.043 [Task submitter] INFO  nextflow.Session - [54/870186] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro263_trimmed_tRNAs-almost-mapped)
Oct-22 19:24:32.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 955; name: ADD_EMPTY_COUNTS (RNAneuro263_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/8ab40bd69f3898014c97d24f885dee]
Oct-22 19:24:34.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 954; name: BAM_SPLIT (67); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/38ff876ecf69bc83d9744b3175e749]
Oct-22 19:24:34.321 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 956; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro263_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/870186957da430c4d099d890e0f83c]
Oct-22 19:24:34.324 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:34.324 [Task submitter] INFO  nextflow.Session - [23/07b0e1] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro263_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:34.328 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:34.328 [Task submitter] INFO  nextflow.Session - [9b/85919d] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro263_trimmed_accepted_hits_ncRNAs)
Oct-22 19:24:34.331 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:34.331 [Task submitter] INFO  nextflow.Session - [fb/846b95] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro263_trimmed_accepted_hits_ncRNAs)
Oct-22 19:24:34.334 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:34.334 [Task submitter] INFO  nextflow.Session - [72/d42099] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro263_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:34.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 949; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro286_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/34/d12bea873ff81b8db7dee973408dde]
Oct-22 19:24:34.341 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:34.341 [Task submitter] INFO  nextflow.Session - [3c/197cef] Submitted process > FEATURE_COUNT_TRNA (RNAneuro263_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:35.122 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 960; name: FEATURE_COUNT_TRNA (RNAneuro263_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3c/197cefa138e2694cadc42848b9fc71]
Oct-22 19:24:35.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 950; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro286_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/ce07eaa28f7cfea2637acea9ead7dd]
Oct-22 19:24:35.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 959; name: FEATURE_COUNT_NCRNA (RNAneuro263_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/846b953150914a75d35e988e093905]
Oct-22 19:24:35.200 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:35.200 [Task submitter] INFO  nextflow.Session - [52/3cd5c0] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro286_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:24:35.204 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:35.204 [Task submitter] INFO  nextflow.Session - [5a/dcf80b] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro286_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:24:35.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 963; name: GENERATE_DEPTHFILE_STATS (RNAneuro286_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/3cd5c0c71aeb1b66a7ed8174361e18]
Oct-22 19:24:35.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 941; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro284_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dc/252511f496a651155eebb8585f8fe7]
Oct-22 19:24:36.538 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:36.538 [Task submitter] INFO  nextflow.Session - [7f/a6b077] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro284_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:24:38.011 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 964; name: GENERATE_DEPTHFILE_STATS (RNAneuro284_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/a6b0778eef143d59d474a0859708a2]
Oct-22 19:24:38.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 958; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro263_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/23/07b0e1595b0cdbeb7ad2d9fc53551f]
Oct-22 19:24:39.457 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 961; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro263_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/72/d420999a43a31f77722cb0909ffbd2]
Oct-22 19:24:39.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 962; name: PLOT_TRNA_ALL_PLOTS (RNAneuro286_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5a/dcf80be3e1e726b69c9ca043b1d988]
Oct-22 19:24:39.846 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:39.846 [Task submitter] INFO  nextflow.Session - [23/147d09] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro263_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:24:39.850 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:39.851 [Task submitter] INFO  nextflow.Session - [11/dc8fbb] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro263_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:24:40.122 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 966; name: GENERATE_DEPTHFILE_STATS (RNAneuro263_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/dc8fbb166063b89ec491845c5058e5]
Oct-22 19:24:43.777 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 965; name: PLOT_TRNA_ALL_PLOTS (RNAneuro263_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/23/147d09492a550c64dea8bcb8fc4faa]
Oct-22 19:24:54.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 223; name: BAM_COLLAPSE (68); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/ba6ccf61393c3fd372944c758686fc]
Oct-22 19:24:54.855 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:54.856 [Task submitter] INFO  nextflow.Session - [e5/add155] Submitted process > BAM_COLLAPSE (69)
Oct-22 19:24:55.860 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:55.860 [Task submitter] INFO  nextflow.Session - [bc/719db4] Submitted process > BAM_SPLIT (68)
Oct-22 19:24:55.863 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:55.864 [Task submitter] INFO  nextflow.Session - [9d/bae2ce] Submitted process > ADD_EMPTY_COUNTS (RNAneuro283_trimmed_tRNAs-almost-mapped)
Oct-22 19:24:55.867 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:55.867 [Task submitter] INFO  nextflow.Session - [0f/c4210e] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro283_trimmed_tRNAs-almost-mapped)
Oct-22 19:24:55.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 969; name: ADD_EMPTY_COUNTS (RNAneuro283_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/bae2ce2dcd487aa7498555b411c9f8]
Oct-22 19:24:57.989 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 968; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro283_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0f/c4210e978071a18e7debce2790a4f1]
Oct-22 19:24:58.738 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 967; name: BAM_SPLIT (68); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/719db4238f8a0c0b7edd04126ba08a]
Oct-22 19:24:59.741 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:59.741 [Task submitter] INFO  nextflow.Session - [c8/80924e] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro283_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:59.745 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:59.745 [Task submitter] INFO  nextflow.Session - [9b/dc36bb] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro283_trimmed_accepted_hits_ncRNAs)
Oct-22 19:24:59.748 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:59.748 [Task submitter] INFO  nextflow.Session - [98/e263f3] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro283_trimmed_accepted_hits_tRNAs)
Oct-22 19:24:59.758 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:59.758 [Task submitter] INFO  nextflow.Session - [da/29cb8a] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro283_trimmed_accepted_hits_ncRNAs)
Oct-22 19:24:59.762 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:24:59.762 [Task submitter] INFO  nextflow.Session - [ae/78b59e] Submitted process > FEATURE_COUNT_TRNA (RNAneuro283_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:00.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 971; name: FEATURE_COUNT_TRNA (RNAneuro283_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ae/78b59ea7183105dc15d52b11b60884]
Oct-22 19:25:00.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 970; name: FEATURE_COUNT_NCRNA (RNAneuro283_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/da/29cb8abef3dbf5792433b70f68af07]
Oct-22 19:25:04.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 972; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro283_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c8/80924e61e80cc29d93221e1f1cf4af]
Oct-22 19:25:04.313 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 973; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro283_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/e263f34edcd06819c24ccc12a6080e]
Oct-22 19:25:05.317 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:05.318 [Task submitter] INFO  nextflow.Session - [fa/c6befd] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro283_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:25:05.322 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:05.323 [Task submitter] INFO  nextflow.Session - [ea/6a1116] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro283_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:25:05.612 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 976; name: GENERATE_DEPTHFILE_STATS (RNAneuro283_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fa/c6befd689bc00819390052ad479e02]
Oct-22 19:25:09.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 975; name: PLOT_TRNA_ALL_PLOTS (RNAneuro283_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/6a111601047732c42bfb7933795844]
Oct-22 19:25:17.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 951; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro286_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/88/8c7f3162727a51e5cc7c433ca08512]
Oct-22 19:25:18.058 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:18.058 [Task submitter] INFO  nextflow.Session - [9f/784a39] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro286_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:25:19.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 977; name: GENERATE_DEPTHFILE_STATS (RNAneuro286_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/784a3913f919b1128811d6c47f6299]
Oct-22 19:25:21.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 957; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro263_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/85919dead6fcfee191137dc1e20727]
Oct-22 19:25:23.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 224; name: BAM_COLLAPSE (69); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/add1553003ab0dbbb3090e7d1b34f4]
~> TaskHandler[id: 974; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro283_trimmed_accepted_hits_ncRNAs); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/dc36bb6f73bd6653c94293b0800c6d]
Oct-22 19:25:24.699 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:24.699 [Task submitter] INFO  nextflow.Session - [0a/22df94] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro263_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:25:24.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 224; name: BAM_COLLAPSE (69); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e5/add1553003ab0dbbb3090e7d1b34f4]
Oct-22 19:25:24.809 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:24.809 [Task submitter] INFO  nextflow.Session - [a6/bad3ee] Submitted process > BAM_COLLAPSE (70)
Oct-22 19:25:24.825 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:24.825 [Task submitter] INFO  nextflow.Session - [2c/30f3b0] Submitted process > ADD_EMPTY_COUNTS (RNAneuro279_trimmed_tRNAs-almost-mapped)
Oct-22 19:25:24.828 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:24.829 [Task submitter] INFO  nextflow.Session - [16/19864c] Submitted process > BAM_SPLIT (69)
Oct-22 19:25:24.833 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:24.833 [Task submitter] INFO  nextflow.Session - [c7/ad7ff2] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro279_trimmed_tRNAs-almost-mapped)
Oct-22 19:25:24.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 979; name: ADD_EMPTY_COUNTS (RNAneuro279_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/30f3b005f432c81acaaafaa7123a0e]
Oct-22 19:25:27.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 981; name: BAM_SPLIT (69); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/19864c36853aa4a69f3220206dfa87]
Oct-22 19:25:27.572 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 978; name: GENERATE_DEPTHFILE_STATS (RNAneuro263_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/22df94a0d808c1013f24e889a940c3]
Oct-22 19:25:27.710 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:27.710 [Task submitter] INFO  nextflow.Session - [7f/7b30eb] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro279_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:27.718 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:27.718 [Task submitter] INFO  nextflow.Session - [9d/8fe2fe] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro279_trimmed_accepted_hits_ncRNAs)
Oct-22 19:25:27.723 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:27.723 [Task submitter] INFO  nextflow.Session - [41/4c3abb] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro279_trimmed_accepted_hits_ncRNAs)
Oct-22 19:25:27.727 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:27.727 [Task submitter] INFO  nextflow.Session - [ba/2902bb] Submitted process > FEATURE_COUNT_TRNA (RNAneuro279_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:27.731 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:27.731 [Task submitter] INFO  nextflow.Session - [08/2371cc] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro279_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:28.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 980; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro279_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c7/ad7ff22baa736cc2b2f7b94bff9332]
Oct-22 19:25:28.099 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 983; name: FEATURE_COUNT_TRNA (RNAneuro279_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/2902bbf7373ae86714f1e27c219c68]
Oct-22 19:25:28.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 986; name: FEATURE_COUNT_NCRNA (RNAneuro279_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/8fe2fec18f1a630302fe5116228d20]
Oct-22 19:25:31.218 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 982; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro279_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/7b30eb02eb7fa96b433f487e81e76a]
Oct-22 19:25:31.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 984; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro279_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/2371ccd62fcd990d868025109e1138]
Oct-22 19:25:32.545 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:32.546 [Task submitter] INFO  nextflow.Session - [7e/3c77f8] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro279_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:25:32.549 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:32.549 [Task submitter] INFO  nextflow.Session - [93/4dc12d] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro279_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:25:32.810 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 987; name: GENERATE_DEPTHFILE_STATS (RNAneuro279_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/93/4dc12dbe41c5c04140f8a07370feff]
Oct-22 19:25:36.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 988; name: PLOT_TRNA_ALL_PLOTS (RNAneuro279_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/3c77f8a2e4ed586ee93926766cf8dc]
Oct-22 19:25:44.380 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 6 -- tasks to be submitted are shown below
~> TaskHandler[id: 226; name: BAM_COLLAPSE (71); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/7aed24581e2111e4f1e62e605c4a55]
~> TaskHandler[id: 227; name: BAM_COLLAPSE (72); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/de81d687bbded699a6c8b0288ce7d1]
~> TaskHandler[id: 228; name: BAM_COLLAPSE (73); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/5450f8fc795085acb2b238521fce5d]
~> TaskHandler[id: 229; name: BAM_COLLAPSE (74); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/4b643243fafef49c68f6d335188215]
~> TaskHandler[id: 230; name: BAM_COLLAPSE (75); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fa/54c335fdb903b388dddc0fbd8a3c83]
~> TaskHandler[id: 231; name: BAM_COLLAPSE (76); status: NEW; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/7978bf8eb2b3d307151895bd56b09d]
Oct-22 19:25:45.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 225; name: BAM_COLLAPSE (70); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a6/bad3eeb47ae3e7c68f8623d1fd8ef3]
Oct-22 19:25:45.175 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:45.175 [Task submitter] INFO  nextflow.Session - [fb/7aed24] Submitted process > BAM_COLLAPSE (71)
Oct-22 19:25:46.179 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:46.180 [Task submitter] INFO  nextflow.Session - [52/ad5538] Submitted process > BAM_SPLIT (70)
Oct-22 19:25:46.183 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:46.183 [Task submitter] INFO  nextflow.Session - [18/944da7] Submitted process > ADD_EMPTY_COUNTS (RNAneuro272_trimmed_tRNAs-almost-mapped)
Oct-22 19:25:46.186 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:46.186 [Task submitter] INFO  nextflow.Session - [cf/2bd099] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro272_trimmed_tRNAs-almost-mapped)
Oct-22 19:25:46.373 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 990; name: ADD_EMPTY_COUNTS (RNAneuro272_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/18/944da7fa127367fa6f67ca35e0a7be]
Oct-22 19:25:48.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 989; name: BAM_SPLIT (70); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/ad5538892e43bcb6ac4b68b6dc76b1]
Oct-22 19:25:48.558 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 991; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro272_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/2bd09976a0c1cb492c8ceac285c9cb]
Oct-22 19:25:48.561 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:48.561 [Task submitter] INFO  nextflow.Session - [b4/e1f1c6] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro272_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:48.564 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:48.564 [Task submitter] INFO  nextflow.Session - [97/17dee6] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro272_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:48.566 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:48.567 [Task submitter] INFO  nextflow.Session - [b9/ec1b0f] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro272_trimmed_accepted_hits_ncRNAs)
Oct-22 19:25:48.569 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:48.569 [Task submitter] INFO  nextflow.Session - [12/c7d380] Submitted process > FEATURE_COUNT_TRNA (RNAneuro272_trimmed_accepted_hits_tRNAs)
Oct-22 19:25:48.577 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:48.577 [Task submitter] INFO  nextflow.Session - [81/218bf4] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro272_trimmed_accepted_hits_ncRNAs)
Oct-22 19:25:49.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 992; name: FEATURE_COUNT_TRNA (RNAneuro272_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/c7d3801bbeaadfdcf3ec0cdaf14f0c]
Oct-22 19:25:49.477 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 994; name: FEATURE_COUNT_NCRNA (RNAneuro272_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/81/218bf4e10241fe76d55982d685189e]
Oct-22 19:25:49.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 974; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro283_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9b/dc36bb6f73bd6653c94293b0800c6d]
Oct-22 19:25:50.737 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:50.737 [Task submitter] INFO  nextflow.Session - [7a/4ebaca] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro283_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:25:52.126 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 995; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro272_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/e1f1c681fd72ba96aa444bf7d19fca]
Oct-22 19:25:52.191 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 997; name: GENERATE_DEPTHFILE_STATS (RNAneuro283_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7a/4ebaca246043f0f4595fcf5fba540e]
Oct-22 19:25:52.938 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 993; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro272_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/97/17dee6a9b75ec8aa3d8ae999278dd3]
Oct-22 19:25:53.941 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:53.942 [Task submitter] INFO  nextflow.Session - [bf/b050cd] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro272_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:25:53.945 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:25:53.945 [Task submitter] INFO  nextflow.Session - [8c/206e8c] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro272_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:25:54.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 999; name: GENERATE_DEPTHFILE_STATS (RNAneuro272_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/b050cd84e85fc2ad397c8ddd25029c]
Oct-22 19:25:57.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 998; name: PLOT_TRNA_ALL_PLOTS (RNAneuro272_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8c/206e8c3cd11a84c9e1968007b30e71]
Oct-22 19:26:13.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 985; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro279_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/4c3abb440e82d5b95ba962fe423cc5]
Oct-22 19:26:14.224 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:14.224 [Task submitter] INFO  nextflow.Session - [0c/072603] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro279_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:26:14.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 226; name: BAM_COLLAPSE (71); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/7aed24581e2111e4f1e62e605c4a55]
Oct-22 19:26:14.319 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:14.319 [Task submitter] INFO  nextflow.Session - [9d/de81d6] Submitted process > BAM_COLLAPSE (72)
Oct-22 19:26:15.324 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:15.324 [Task submitter] INFO  nextflow.Session - [e9/d3c9e9] Submitted process > ADD_EMPTY_COUNTS (RNAneuro229_trimmed_tRNAs-almost-mapped)
Oct-22 19:26:15.327 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:15.328 [Task submitter] INFO  nextflow.Session - [17/25b34d] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro229_trimmed_tRNAs-almost-mapped)
Oct-22 19:26:15.331 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:15.331 [Task submitter] INFO  nextflow.Session - [d1/03c861] Submitted process > BAM_SPLIT (71)
Oct-22 19:26:15.417 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1001; name: ADD_EMPTY_COUNTS (RNAneuro229_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e9/d3c9e9701f8e5f49fe74eab751ffb8]
Oct-22 19:26:16.024 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1000; name: GENERATE_DEPTHFILE_STATS (RNAneuro279_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0c/072603f2bd54671ebfdefdf67944bf]
Oct-22 19:26:17.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1003; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro229_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/25b34dab6926d8405cf2bcfe5aa2e1]
Oct-22 19:26:17.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1002; name: BAM_SPLIT (71); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d1/03c86192004c559abb6004f2b1e8a7]
Oct-22 19:26:18.802 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:18.803 [Task submitter] INFO  nextflow.Session - [73/02878b] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro229_trimmed_accepted_hits_tRNAs)
Oct-22 19:26:18.806 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:18.807 [Task submitter] INFO  nextflow.Session - [8d/7f08ed] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro229_trimmed_accepted_hits_ncRNAs)
Oct-22 19:26:18.811 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:18.811 [Task submitter] INFO  nextflow.Session - [7c/8293bd] Submitted process > FEATURE_COUNT_TRNA (RNAneuro229_trimmed_accepted_hits_tRNAs)
Oct-22 19:26:18.815 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:18.815 [Task submitter] INFO  nextflow.Session - [93/191acc] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro229_trimmed_accepted_hits_ncRNAs)
Oct-22 19:26:18.819 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:18.820 [Task submitter] INFO  nextflow.Session - [4c/aacea6] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro229_trimmed_accepted_hits_tRNAs)
Oct-22 19:26:20.307 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1007; name: FEATURE_COUNT_TRNA (RNAneuro229_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7c/8293bd1e35fb28193c2fa9bbc28ff7]
Oct-22 19:26:20.407 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1004; name: FEATURE_COUNT_NCRNA (RNAneuro229_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/7f08ed6b4b9f7074b2bf4ec3dabca2]
Oct-22 19:26:22.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1005; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro229_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/02878be89fbb194708076943337db2]
Oct-22 19:26:23.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1006; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro229_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/aacea638fc4a89b34ddf21f8bfda03]
Oct-22 19:26:25.253 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:25.253 [Task submitter] INFO  nextflow.Session - [5c/738dfd] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro229_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:26:25.257 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:25.257 [Task submitter] INFO  nextflow.Session - [ee/dea68d] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro229_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:26:25.541 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1010; name: GENERATE_DEPTHFILE_STATS (RNAneuro229_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/738dfdc51ec3d5364ff2dc734f4660]
Oct-22 19:26:29.098 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1009; name: PLOT_TRNA_ALL_PLOTS (RNAneuro229_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/dea68dbc3f5e217ad3721e8d883b4f]
Oct-22 19:26:34.675 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 996; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro272_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b9/ec1b0f5923c41701b926325d4cd2a4]
Oct-22 19:26:35.679 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:35.679 [Task submitter] INFO  nextflow.Session - [52/d32db5] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro272_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:26:37.220 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1011; name: GENERATE_DEPTHFILE_STATS (RNAneuro272_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/d32db551d5d852510636f7baa7fa5b]
Oct-22 19:26:50.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 227; name: BAM_COLLAPSE (72); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9d/de81d687bbded699a6c8b0288ce7d1]
Oct-22 19:26:50.890 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:50.890 [Task submitter] INFO  nextflow.Session - [15/5450f8] Submitted process > BAM_COLLAPSE (73)
Oct-22 19:26:51.894 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:51.894 [Task submitter] INFO  nextflow.Session - [27/99adde] Submitted process > BAM_SPLIT (72)
Oct-22 19:26:51.898 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:51.898 [Task submitter] INFO  nextflow.Session - [16/69295e] Submitted process > ADD_EMPTY_COUNTS (RNAneuro277_trimmed_tRNAs-almost-mapped)
Oct-22 19:26:51.902 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:51.902 [Task submitter] INFO  nextflow.Session - [03/865b19] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro277_trimmed_tRNAs-almost-mapped)
Oct-22 19:26:51.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1013; name: ADD_EMPTY_COUNTS (RNAneuro277_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/69295ee0330a22604bd9d43b99e90b]
Oct-22 19:26:54.200 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1014; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro277_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/03/865b19f6e5fecd0208ec5831799ca6]
Oct-22 19:26:56.733 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1012; name: BAM_SPLIT (72); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/99addeacf54f7b8dfbe3a45c671912]
Oct-22 19:26:57.737 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:57.737 [Task submitter] INFO  nextflow.Session - [e4/aeecec] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro277_trimmed_accepted_hits_tRNAs)
Oct-22 19:26:57.742 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:57.742 [Task submitter] INFO  nextflow.Session - [fb/93c4d2] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro277_trimmed_accepted_hits_tRNAs)
Oct-22 19:26:57.747 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:57.747 [Task submitter] INFO  nextflow.Session - [bf/72724d] Submitted process > FEATURE_COUNT_TRNA (RNAneuro277_trimmed_accepted_hits_tRNAs)
Oct-22 19:26:57.751 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:57.751 [Task submitter] INFO  nextflow.Session - [b4/51091a] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro277_trimmed_accepted_hits_ncRNAs)
Oct-22 19:26:57.756 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:26:57.756 [Task submitter] INFO  nextflow.Session - [29/8d9e78] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro277_trimmed_accepted_hits_ncRNAs)
Oct-22 19:26:58.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1017; name: FEATURE_COUNT_TRNA (RNAneuro277_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/72724d5ea1d60952a70c833565e6e9]
Oct-22 19:26:58.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1019; name: FEATURE_COUNT_NCRNA (RNAneuro277_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/29/8d9e783c25693016a58badc85ba9e8]
Oct-22 19:27:01.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1016; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro277_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/93c4d263c490690e55185f2d42672e]
Oct-22 19:27:02.842 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:02.842 [Task submitter] INFO  nextflow.Session - [1b/420002] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro277_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:27:02.846 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:02.846 [Task submitter] INFO  nextflow.Session - [87/c9ecaa] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro277_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:27:02.933 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1015; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro277_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/aeececfdd4187d2a777c852c76f22f]
Oct-22 19:27:03.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1021; name: GENERATE_DEPTHFILE_STATS (RNAneuro277_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/420002c9604795da490530ae43813d]
Oct-22 19:27:06.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1008; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro229_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/93/191accf6b366b10696e4ffcd6cb01f]
Oct-22 19:27:06.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1020; name: PLOT_TRNA_ALL_PLOTS (RNAneuro277_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/c9ecaabcbcab26be47abe7dd7eb59d]
Oct-22 19:27:06.776 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:06.776 [Task submitter] INFO  nextflow.Session - [bc/4402d3] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro229_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:27:08.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1022; name: GENERATE_DEPTHFILE_STATS (RNAneuro229_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/4402d3251973f6eb2639fce0409a52]
Oct-22 19:27:13.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 228; name: BAM_COLLAPSE (73); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/15/5450f8fc795085acb2b238521fce5d]
Oct-22 19:27:13.935 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:13.936 [Task submitter] INFO  nextflow.Session - [41/4b6432] Submitted process > BAM_COLLAPSE (74)
Oct-22 19:27:14.940 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:14.940 [Task submitter] INFO  nextflow.Session - [18/0af1d1] Submitted process > BAM_SPLIT (73)
Oct-22 19:27:14.943 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:14.944 [Task submitter] INFO  nextflow.Session - [49/f63fc9] Submitted process > ADD_EMPTY_COUNTS (RNAneuro246_trimmed_tRNAs-almost-mapped)
Oct-22 19:27:14.947 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:14.947 [Task submitter] INFO  nextflow.Session - [fb/68a901] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro246_trimmed_tRNAs-almost-mapped)
Oct-22 19:27:15.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1024; name: ADD_EMPTY_COUNTS (RNAneuro246_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/49/f63fc9129598f54aa195627e99431e]
Oct-22 19:27:17.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1025; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro246_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fb/68a9011ff1bb139cd5a835bccea15e]
Oct-22 19:27:17.306 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1023; name: BAM_SPLIT (73); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/18/0af1d1b8408a55f5b8614baf158b80]
Oct-22 19:27:18.309 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:18.309 [Task submitter] INFO  nextflow.Session - [1f/404d0f] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro246_trimmed_accepted_hits_tRNAs)
Oct-22 19:27:18.313 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:18.313 [Task submitter] INFO  nextflow.Session - [e0/e5ed7b] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro246_trimmed_accepted_hits_tRNAs)
Oct-22 19:27:18.317 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:18.317 [Task submitter] INFO  nextflow.Session - [92/7def21] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro246_trimmed_accepted_hits_ncRNAs)
Oct-22 19:27:18.320 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:18.320 [Task submitter] INFO  nextflow.Session - [64/d107d8] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro246_trimmed_accepted_hits_ncRNAs)
Oct-22 19:27:18.323 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:18.323 [Task submitter] INFO  nextflow.Session - [12/25aa48] Submitted process > FEATURE_COUNT_TRNA (RNAneuro246_trimmed_accepted_hits_tRNAs)
Oct-22 19:27:18.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1028; name: FEATURE_COUNT_TRNA (RNAneuro246_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/12/25aa48a30bab7ec5aff383302feb54]
Oct-22 19:27:18.796 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1026; name: FEATURE_COUNT_NCRNA (RNAneuro246_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/d107d8d9f7cfdc94e94a54bd3b5350]
Oct-22 19:27:21.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1027; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro246_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/404d0fe9fff881a3b03a1bfc182d41]
Oct-22 19:27:22.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1029; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro246_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/e5ed7b60f1fe9c45e23d99ddabee1d]
Oct-22 19:27:23.236 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:23.236 [Task submitter] INFO  nextflow.Session - [06/4ab94e] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro246_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:27:23.240 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:23.240 [Task submitter] INFO  nextflow.Session - [f4/4de85f] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro246_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:27:23.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1032; name: GENERATE_DEPTHFILE_STATS (RNAneuro246_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/06/4ab94ea2d843004562524809be33f0]
Oct-22 19:27:27.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1031; name: PLOT_TRNA_ALL_PLOTS (RNAneuro246_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f4/4de85f475baf91842b91077bccaeb4]
Oct-22 19:27:33.614 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 229; name: BAM_COLLAPSE (74); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/4b643243fafef49c68f6d335188215]
Oct-22 19:27:33.618 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:33.618 [Task submitter] INFO  nextflow.Session - [fa/54c335] Submitted process > BAM_COLLAPSE (75)
Oct-22 19:27:34.622 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:34.622 [Task submitter] INFO  nextflow.Session - [f7/26e6bb] Submitted process > BAM_SPLIT (74)
Oct-22 19:27:34.626 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:34.626 [Task submitter] INFO  nextflow.Session - [5f/a84b80] Submitted process > ADD_EMPTY_COUNTS (RNAneuro287_trimmed_tRNAs-almost-mapped)
Oct-22 19:27:34.629 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:34.629 [Task submitter] INFO  nextflow.Session - [52/1f7968] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro287_trimmed_tRNAs-almost-mapped)
Oct-22 19:27:34.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1033; name: ADD_EMPTY_COUNTS (RNAneuro287_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5f/a84b804e5416527b7476b0a0be8577]
Oct-22 19:27:37.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1034; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro287_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/1f7968041aca569cb69f86245fb4c4]
Oct-22 19:27:38.065 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1035; name: BAM_SPLIT (74); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/26e6bbe92a7a17af2b319c548bc3ba]
Oct-22 19:27:39.068 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:39.068 [Task submitter] INFO  nextflow.Session - [bc/90e107] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro287_trimmed_accepted_hits_tRNAs)
Oct-22 19:27:39.071 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:39.072 [Task submitter] INFO  nextflow.Session - [d4/ff3d85] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro287_trimmed_accepted_hits_ncRNAs)
Oct-22 19:27:39.075 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:39.075 [Task submitter] INFO  nextflow.Session - [91/99c7da] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro287_trimmed_accepted_hits_tRNAs)
Oct-22 19:27:39.078 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:39.078 [Task submitter] INFO  nextflow.Session - [be/7da3c7] Submitted process > FEATURE_COUNT_TRNA (RNAneuro287_trimmed_accepted_hits_tRNAs)
Oct-22 19:27:39.081 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:39.081 [Task submitter] INFO  nextflow.Session - [76/d94523] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro287_trimmed_accepted_hits_ncRNAs)
Oct-22 19:27:39.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1039; name: FEATURE_COUNT_TRNA (RNAneuro287_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/7da3c7cac85d17852a551c949db5a3]
Oct-22 19:27:39.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1037; name: FEATURE_COUNT_NCRNA (RNAneuro287_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/76/d9452332153c69c9c217f471cfc475]
Oct-22 19:27:42.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1040; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro287_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/90e107247abd2acb689bdefd7b2d0f]
Oct-22 19:27:42.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1038; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro287_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/99c7daa2004319eb9990230b3891b9]
Oct-22 19:27:43.921 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:43.921 [Task submitter] INFO  nextflow.Session - [28/83faff] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro287_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:27:43.924 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:43.924 [Task submitter] INFO  nextflow.Session - [71/4c23a2] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro287_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:27:44.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1042; name: GENERATE_DEPTHFILE_STATS (RNAneuro287_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/28/83faffbf6eb1adc7d4b484968c17f0]
Oct-22 19:27:44.337 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1018; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro277_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/51091a022dcf5882a110fb6ee4959f]
Oct-22 19:27:45.341 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:45.341 [Task submitter] INFO  nextflow.Session - [4e/116eaf] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro277_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:27:46.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1043; name: GENERATE_DEPTHFILE_STATS (RNAneuro277_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/116eaf05b4a619b0ee85d227e4b1e5]
Oct-22 19:27:47.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1041; name: PLOT_TRNA_ALL_PLOTS (RNAneuro287_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/4c23a2cd2a375dc2135828b7df7784]
Oct-22 19:27:57.702 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 230; name: BAM_COLLAPSE (75); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fa/54c335fdb903b388dddc0fbd8a3c83]
Oct-22 19:27:57.705 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:57.706 [Task submitter] INFO  nextflow.Session - [84/7978bf] Submitted process > BAM_COLLAPSE (76)
Oct-22 19:27:57.713 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:57.714 [Task submitter] INFO  nextflow.Session - [a7/cfeee1] Submitted process > BAM_SPLIT (75)
Oct-22 19:27:57.718 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:57.718 [Task submitter] INFO  nextflow.Session - [ae/d0bac0] Submitted process > ADD_EMPTY_COUNTS (RNAneuro281_trimmed_tRNAs-almost-mapped)
Oct-22 19:27:57.721 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:27:57.722 [Task submitter] INFO  nextflow.Session - [4f/4aca2c] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro281_trimmed_tRNAs-almost-mapped)
Oct-22 19:27:57.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1046; name: ADD_EMPTY_COUNTS (RNAneuro281_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ae/d0bac07c57c242f12f70fbc268b6b5]
Oct-22 19:28:00.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1045; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro281_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/4aca2c425de9fb67b1d76058c14a44]
Oct-22 19:28:00.298 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1044; name: BAM_SPLIT (75); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/cfeee19e7855e1a80578f7daca8f35]
Oct-22 19:28:00.312 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:00.312 [Task submitter] INFO  nextflow.Session - [11/1c0224] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro281_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:00.316 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:00.316 [Task submitter] INFO  nextflow.Session - [c0/0d460f] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro281_trimmed_accepted_hits_ncRNAs)
Oct-22 19:28:00.319 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:00.319 [Task submitter] INFO  nextflow.Session - [24/09bc7f] Submitted process > FEATURE_COUNT_TRNA (RNAneuro281_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:00.323 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:00.323 [Task submitter] INFO  nextflow.Session - [4d/859f8b] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro281_trimmed_accepted_hits_ncRNAs)
Oct-22 19:28:00.326 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:00.327 [Task submitter] INFO  nextflow.Session - [03/e1abe7] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro281_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:00.911 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1047; name: FEATURE_COUNT_TRNA (RNAneuro281_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/24/09bc7fdde999f2f3bcd71f69d36cf6]
Oct-22 19:28:00.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1048; name: FEATURE_COUNT_NCRNA (RNAneuro281_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c0/0d460f6c479a9a9480d2824d47d60a]
Oct-22 19:28:04.257 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1049; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro281_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/03/e1abe7ce351af47cf7c65d1df3544c]
Oct-22 19:28:04.265 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:04.265 [Task submitter] INFO  nextflow.Session - [01/72cb1f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro281_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:28:04.269 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:04.269 [Task submitter] INFO  nextflow.Session - [fd/a68f24] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro281_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:28:04.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1053; name: GENERATE_DEPTHFILE_STATS (RNAneuro281_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/01/72cb1f394304e87ea68a0cecfb83dc]
Oct-22 19:28:06.321 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1030; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro246_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/7def21e1b19061661f9c623a1fdbae]
Oct-22 19:28:06.330 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:06.331 [Task submitter] INFO  nextflow.Session - [b0/de2931] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro246_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:28:06.588 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1050; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro281_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/1c02244a9cd2de4f3eece04241b030]
Oct-22 19:28:07.837 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1054; name: GENERATE_DEPTHFILE_STATS (RNAneuro246_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b0/de2931dfeb7f36b11c0972aeaa9863]
Oct-22 19:28:08.413 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1052; name: PLOT_TRNA_ALL_PLOTS (RNAneuro281_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fd/a68f24b7aacaa87d4dc5853fec0013]
Oct-22 19:28:22.059 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 231; name: BAM_COLLAPSE (76); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/7978bf8eb2b3d307151895bd56b09d]
Oct-22 19:28:22.069 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:22.069 [Task submitter] INFO  nextflow.Session - [52/160f81] Submitted process > BAM_SPLIT (76)
Oct-22 19:28:22.073 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:22.073 [Task submitter] INFO  nextflow.Session - [5e/442c36] Submitted process > ADD_EMPTY_COUNTS (RNAneuro288_trimmed_tRNAs-almost-mapped)
Oct-22 19:28:22.076 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:22.076 [Task submitter] INFO  nextflow.Session - [75/89603e] Submitted process > GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro288_trimmed_tRNAs-almost-mapped)
Oct-22 19:28:22.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1055; name: ADD_EMPTY_COUNTS (RNAneuro288_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/442c369213ab7df2f94a02e001c0a3]
Oct-22 19:28:24.069 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1057; name: GENERATE_MULTIMAPPER_TRNA_DEPTH_FILES (RNAneuro288_trimmed_tRNAs-almost-mapped); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/75/89603edea44a80917cb79a903df220]
Oct-22 19:28:24.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1056; name: BAM_SPLIT (76); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/160f8135e1b94a5bf1e2597f9bfc1b]
Oct-22 19:28:24.605 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:24.605 [Task submitter] INFO  nextflow.Session - [d7/3fa209] Submitted process > PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro288_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:24.609 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:24.609 [Task submitter] INFO  nextflow.Session - [58/943286] Submitted process > FEATURE_COUNT_TRNA (RNAneuro288_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:24.614 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:24.614 [Task submitter] INFO  nextflow.Session - [96/63e815] Submitted process > FEATURE_COUNT_NCRNA (RNAneuro288_trimmed_accepted_hits_ncRNAs)
Oct-22 19:28:24.617 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:24.617 [Task submitter] INFO  nextflow.Session - [ed/8c29ce] Submitted process > GENERATE_TRNA_DEPTH_FILES (RNAneuro288_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:24.620 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:24.620 [Task submitter] INFO  nextflow.Session - [62/092d17] Submitted process > GENERATE_NCRNA_DEPTH_FILES (RNAneuro288_trimmed_accepted_hits_ncRNAs)
Oct-22 19:28:24.868 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1059; name: FEATURE_COUNT_TRNA (RNAneuro288_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/943286d6855fd626bb5b172552197b]
Oct-22 19:28:25.089 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1062; name: FEATURE_COUNT_NCRNA (RNAneuro288_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/96/63e81583ba40e088b15067f8ea2186]
Oct-22 19:28:25.232 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:25.232 [Task submitter] INFO  nextflow.Session - [2c/b93e9a] Submitted process > SUM_COUNTS
Oct-22 19:28:26.832 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1036; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro287_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d4/ff3d8587de665e3292bd5f842b9b8d]
Oct-22 19:28:26.842 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:26.842 [Task submitter] INFO  nextflow.Session - [ff/d3bf72] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro287_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:28:27.638 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1063; name: SUM_COUNTS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/b93e9afcfa07d722b4c64da9bce393]
Oct-22 19:28:27.756 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.757 [Task submitter] INFO  nextflow.Session - [38/9a9aba] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro217_trimmed_all-counts)
Oct-22 19:28:27.782 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.782 [Task submitter] INFO  nextflow.Session - [42/3e145b] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro219_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.786 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.786 [Task submitter] INFO  nextflow.Session - [a3/7d4271] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro215_trimmed_all-counts)
Oct-22 19:28:27.789 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.789 [Task submitter] INFO  nextflow.Session - [83/f35a8e] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro216_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.794 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.794 [Task submitter] INFO  nextflow.Session - [c1/e49e56] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro220_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.802 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.802 [Task submitter] INFO  nextflow.Session - [36/39978c] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro244_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.813 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.815 [Task submitter] INFO  nextflow.Session - [bc/b3f0dc] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro221_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.825 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.826 [Task submitter] INFO  nextflow.Session - [c2/92478e] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro231_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.833 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.834 [Task submitter] INFO  nextflow.Session - [d9/a1481d] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro236_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.837 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.837 [Task submitter] INFO  nextflow.Session - [5c/da0c97] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro230_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.841 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.841 [Task submitter] INFO  nextflow.Session - [be/52786c] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro235_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.845 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.845 [Task submitter] INFO  nextflow.Session - [f5/08ee0d] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro218_trimmed_all-counts)
Oct-22 19:28:27.850 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.850 [Task submitter] INFO  nextflow.Session - [e6/7ef6fe] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro214_trimmed_all-counts)
Oct-22 19:28:27.855 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.855 [Task submitter] INFO  nextflow.Session - [b7/182e43] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro219_trimmed_all-counts)
Oct-22 19:28:27.858 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.858 [Task submitter] INFO  nextflow.Session - [71/aa8bcf] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro214_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.863 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.863 [Task submitter] INFO  nextflow.Session - [b4/aff88b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro213_trimmed_all-counts)
Oct-22 19:28:27.865 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.865 [Task submitter] INFO  nextflow.Session - [74/eb6ea8] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro232_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.868 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.868 [Task submitter] INFO  nextflow.Session - [79/90d90a] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro217_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.871 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.871 [Task submitter] INFO  nextflow.Session - [03/b45bbe] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro220_trimmed_all-counts)
Oct-22 19:28:27.874 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.874 [Task submitter] INFO  nextflow.Session - [51/8f2ecf] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro216_trimmed_all-counts)
Oct-22 19:28:27.877 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.878 [Task submitter] INFO  nextflow.Session - [bd/386a5f] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro215_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.885 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.886 [Task submitter] INFO  nextflow.Session - [5d/86fd3f] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro224_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:27.891 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.891 [Task submitter] INFO  nextflow.Session - [73/c20643] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro221_trimmed_all-counts)
Oct-22 19:28:27.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1101; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro217_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/9a9aba7c43b368f515f10c616585b1]
Oct-22 19:28:27.999 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:27.999 [Task submitter] INFO  nextflow.Session - [c9/3509d0] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro237_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1098; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro215_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a3/7d4271b12f4194131abe3087491df7]
Oct-22 19:28:28.009 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.009 [Task submitter] INFO  nextflow.Session - [16/edb853] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro228_trimmed_all-counts)
Oct-22 19:28:28.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1106; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro219_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/182e4343c251ec907502a8d811646c]
Oct-22 19:28:28.190 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.190 [Task submitter] INFO  nextflow.Session - [d7/8f605b] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro238_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.224 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1095; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro213_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/aff88b1131035ef3f4ccca34c4eede]
Oct-22 19:28:28.228 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.228 [Task submitter] INFO  nextflow.Session - [10/a920dd] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro222_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.263 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1108; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro220_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/03/b45bbec4993491fb817bddc2240001]
Oct-22 19:28:28.268 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.268 [Task submitter] INFO  nextflow.Session - [6b/8c1731] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro235_trimmed_all-counts)
Oct-22 19:28:28.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1104; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro218_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/08ee0d47fa002153df131edc33ef50]
Oct-22 19:28:28.285 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.285 [Task submitter] INFO  nextflow.Session - [17/eda8e3] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro228_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.299 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1099; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro214_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/7ef6fe15f17396825801781daf6ff4]
Oct-22 19:28:28.306 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.306 [Task submitter] INFO  nextflow.Session - [3f/f862b9] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro226_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1102; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro216_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/51/8f2ecfc759838435e34b03d2face22]
Oct-22 19:28:28.330 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.330 [Task submitter] INFO  nextflow.Session - [58/612428] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro265_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1110; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro221_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/c2064307e14808694cbcbec2bb74b0]
Oct-22 19:28:28.404 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.405 [Task submitter] INFO  nextflow.Session - [39/e9c985] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro255_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.544 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1077; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro219_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/42/3e145bc613d9b897295ff44a24d97f]
Oct-22 19:28:28.547 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.547 [Task submitter] INFO  nextflow.Session - [3d/de9633] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro234_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1073; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro216_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/f35a8ee30458e55a5b20f1cf250a8b]
Oct-22 19:28:28.646 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.646 [Task submitter] INFO  nextflow.Session - [04/a3b472] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro240_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1066; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro220_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c1/e49e56e2706f29137381b3d5be0be9]
Oct-22 19:28:28.671 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.671 [Task submitter] INFO  nextflow.Session - [43/3b63b5] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro213_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.834 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1090; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro244_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/39978c43969c461d6b1d0c34031b6f]
Oct-22 19:28:28.837 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.838 [Task submitter] INFO  nextflow.Session - [bd/c6c1af] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro223_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1065; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro236_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/a1481dca06ecef96413f1f0bec64a9]
Oct-22 19:28:28.963 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.963 [Task submitter] INFO  nextflow.Session - [74/639425] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro233_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.974 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1069; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro221_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bc/b3f0dc75fe66df0204bc14f9977f0b]
Oct-22 19:28:28.976 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.976 [Task submitter] INFO  nextflow.Session - [3f/eeaada] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro225_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:28.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1072; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro231_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/92478e2e3d07150fbfce8389bf64b1]
Oct-22 19:28:28.980 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.980 [Task submitter] INFO  nextflow.Session - [7d/cda3d5] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro261_trimmed_all-counts)
Oct-22 19:28:28.996 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1089; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro230_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/da0c9709dcfcba76b7e17a5f6938cd]
Oct-22 19:28:28.999 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:28.999 [Task submitter] INFO  nextflow.Session - [03/ebf6f7] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro239_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:29.013 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1084; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro235_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/52786cb851ed719e065f39d641017e]
Oct-22 19:28:29.016 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.016 [Task submitter] INFO  nextflow.Session - [cf/f6a326] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro222_trimmed_all-counts)
Oct-22 19:28:29.137 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1071; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro214_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/aa8bcf45df4dac3b8db39e277330c2]
Oct-22 19:28:29.140 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.140 [Task submitter] INFO  nextflow.Session - [09/fddbf5] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro223_trimmed_all-counts)
Oct-22 19:28:29.175 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1074; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro232_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/eb6ea86284b8249ea528b86cabb69c]
Oct-22 19:28:29.180 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.180 [Task submitter] INFO  nextflow.Session - [64/4c2868] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro224_trimmed_all-counts)
Oct-22 19:28:29.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1078; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro224_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/86fd3f98f5efcecdfbf95a4c65416c]
Oct-22 19:28:29.239 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.239 [Task submitter] INFO  nextflow.Session - [88/e0feb6] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro225_trimmed_all-counts)
Oct-22 19:28:29.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1070; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro215_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/386a5fc07d6a80964742c3362ef5c8]
Oct-22 19:28:29.274 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.274 [Task submitter] INFO  nextflow.Session - [e6/c8a5ce] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro227_trimmed_all-counts)
Oct-22 19:28:29.277 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1079; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro238_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/8f605bca829bc185cd9e08723e1b73]
Oct-22 19:28:29.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1083; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro222_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/a920dd3e286f07854fb305f76cc872]
Oct-22 19:28:29.285 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.286 [Task submitter] INFO  nextflow.Session - [be/ce4f42] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro220_trimmed_all-counts)
Oct-22 19:28:29.289 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.289 [Task submitter] INFO  nextflow.Session - [5f/cd6f1a] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro219_trimmed_all-counts)
Oct-22 19:28:29.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1080; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro237_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c9/3509d04a489fd9db0a3005ded03d54]
Oct-22 19:28:29.316 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.317 [Task submitter] INFO  nextflow.Session - [bd/331ca4] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro215_trimmed_all-counts)
Oct-22 19:28:29.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1112; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro222_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/f6a3263f57184280cb03f29da80380]
Oct-22 19:28:29.330 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.330 [Task submitter] INFO  nextflow.Session - [03/7ecb75] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro214_trimmed_all-counts)
Oct-22 19:28:29.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1067; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro217_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/90d90a02628b42ff141e92a111ba37]
Oct-22 19:28:29.382 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.382 [Task submitter] INFO  nextflow.Session - [88/2c2166] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro222_trimmed_all-counts)
Oct-22 19:28:29.500 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1081; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro228_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/eda8e39b6a037ed3a718ed0c420a0d]
Oct-22 19:28:29.504 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.504 [Task submitter] INFO  nextflow.Session - [72/110b2f] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro217_trimmed_all-counts)
Oct-22 19:28:29.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1085; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro255_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/39/e9c985f58e2d1795d44140402ad823]
Oct-22 19:28:29.508 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.508 [Task submitter] INFO  nextflow.Session - [9c/e6a9f6] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro221_trimmed_all-counts)
Oct-22 19:28:29.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1116; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro223_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/09/fddbf5c749639f3c141822f033662d]
Oct-22 19:28:29.514 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.514 [Task submitter] INFO  nextflow.Session - [b6/132d63] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro226_trimmed_all-counts)
Oct-22 19:28:29.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1086; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro265_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/58/6124283abf05aef04d2bdd8fe6d78f]
Oct-22 19:28:29.590 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.590 [Task submitter] INFO  nextflow.Session - [a9/487153] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro250_trimmed_all-counts)
Oct-22 19:28:29.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1126; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro227_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e6/c8a5ce9e00d9b82ca4ee145f593f54]
Oct-22 19:28:29.614 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.614 [Task submitter] INFO  nextflow.Session - [0d/053cfb] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro216_trimmed_all-counts)
Oct-22 19:28:29.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1122; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro225_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/88/e0feb669304c4a91c2ca2105bc2a6e]
Oct-22 19:28:29.628 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.628 [Task submitter] INFO  nextflow.Session - [41/2d06c8] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro218_trimmed_all-counts)
Oct-22 19:28:29.634 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1118; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro224_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/64/4c286868cfcf6c3fe004dd488a240a]
Oct-22 19:28:29.638 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.638 [Task submitter] INFO  nextflow.Session - [d6/8372e7] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro213_trimmed_all-counts)
Oct-22 19:28:29.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1068; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro226_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3f/f862b9c3276b6c5ec3a1d4d44ac567]
Oct-22 19:28:29.643 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.643 [Task submitter] INFO  nextflow.Session - [6e/6b975f] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro229_trimmed_all-counts)
Oct-22 19:28:29.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1088; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro234_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3d/de96337d7808c98d779cb69a2aa69e]
Oct-22 19:28:29.662 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.662 [Task submitter] INFO  nextflow.Session - [4f/314872] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro230_trimmed_all-counts)
Oct-22 19:28:29.674 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1082; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro223_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/c6c1afd5f91895a3f2b0fb70b9b157]
Oct-22 19:28:29.677 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.677 [Task submitter] INFO  nextflow.Session - [7f/32bf1a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro231_trimmed_all-counts)
Oct-22 19:28:29.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1076; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro240_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/a3b47266bd19aec87e4bd2bd478734]
Oct-22 19:28:29.721 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.721 [Task submitter] INFO  nextflow.Session - [ca/4831e7] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro228_trimmed_all-counts)
Oct-22 19:28:29.722 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1087; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro213_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/3b63b5efcfc727b6e1f7788838fe86]
Oct-22 19:28:29.724 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.724 [Task submitter] INFO  nextflow.Session - [ff/92ac0a] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro223_trimmed_all-counts)
Oct-22 19:28:29.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1091; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro233_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/639425cda7f4437fc75b94df267c50]
Oct-22 19:28:29.727 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.727 [Task submitter] INFO  nextflow.Session - [e4/11272f] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro224_trimmed_all-counts)
Oct-22 19:28:29.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1075; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro225_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3f/eeaada7fdf044ba082963c334fd448]
Oct-22 19:28:29.730 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.730 [Task submitter] INFO  nextflow.Session - [14/9faad3] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro246_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:29.731 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1124; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro226_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/132d632bf54b348d5db4491ada730f]
Oct-22 19:28:29.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.733 [Task submitter] INFO  nextflow.Session - [20/784d92] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro227_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:29.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1092; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro239_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/03/ebf6f7c81bd9880d349971aa335b9b]
Oct-22 19:28:29.787 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1188; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro250_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a9/487153f3975e50e21be72af9e93502]
Oct-22 19:28:29.787 [Task submitter] INFO  nextflow.Session - [83/f565c5] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro227_trimmed_all-counts)
Oct-22 19:28:29.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1132; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro229_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/6b975f0dd063131c784e3a6ee2ae93]
Oct-22 19:28:29.791 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.791 [Task submitter] INFO  nextflow.Session - [bf/55225e] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro225_trimmed_all-counts)
Oct-22 19:28:29.793 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.794 [Task submitter] INFO  nextflow.Session - [98/0330f5] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro226_trimmed_all-counts)
Oct-22 19:28:29.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1137; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro230_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4f/31487271f9f4732c060425e22024cf]
Oct-22 19:28:29.799 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.800 [Task submitter] INFO  nextflow.Session - [70/5cbb3a] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro256_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:29.814 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1138; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro231_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7f/32bf1a59fb4054db937eab02bd4fc4]
Oct-22 19:28:29.817 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.817 [Task submitter] INFO  nextflow.Session - [ca/44d651] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro230_trimmed_all-counts)
Oct-22 19:28:29.828 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1064; name: GENERATE_DEPTHFILE_STATS (RNAneuro287_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/d3bf72557dd45180068b0a2b56a471]
Oct-22 19:28:29.831 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.831 [Task submitter] INFO  nextflow.Session - [92/fee5b5] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro231_trimmed_all-counts)
Oct-22 19:28:29.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1131; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro228_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/4831e7ed2863ffe635084093b56f36]
Oct-22 19:28:29.868 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:29.869 [Task submitter] INFO  nextflow.Session - [b6/278985] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro257_trimmed_all-counts)
Oct-22 19:28:30.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1245; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro246_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/14/9faad3ab8b270a3a5cb3b8ae28de46]
Oct-22 19:28:30.180 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:30.180 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1113; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro227_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/20/784d92a01b9ffd6b2e6f2adfb4d678]
Oct-22 19:28:30.180 [Task submitter] INFO  nextflow.Session - [16/5d5dc7] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro218_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:30.183 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:30.183 [Task submitter] INFO  nextflow.Session - [4e/3149f9] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro229_trimmed_all-counts)
Oct-22 19:28:30.248 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1127; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro256_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/5cbb3a5519e8057104ac6b9e250c0f]
Oct-22 19:28:30.251 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:30.251 [Task submitter] INFO  nextflow.Session - [f5/673340] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro233_trimmed_all-counts)
Oct-22 19:28:30.600 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1121; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro218_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/5d5dc72d3aeee2c1cfe23bca06295b]
Oct-22 19:28:30.602 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:30.602 [Task submitter] INFO  nextflow.Session - [be/188841] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro232_trimmed_all-counts)
Oct-22 19:28:30.607 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1058; name: GENERATE_TRNA_DEPTH_FILES (RNAneuro288_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/8c29cec06f48e51ecd40de1f70e6fb]
Oct-22 19:28:30.609 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:30.610 [Task submitter] INFO  nextflow.Session - [ab/febb4d] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro234_trimmed_all-counts)
Oct-22 19:28:31.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1060; name: PLOT_TRNA_ALIGNMENT_LENGTH (RNAneuro288_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/3fa2090b285f31cb8cf448569208ba]
Oct-22 19:28:31.731 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:31.731 [Task submitter] INFO  nextflow.Session - [f7/472ead] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro242_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:32.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1130; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro242_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/472ead8d73782c80992ba6ad965f68]
Oct-22 19:28:32.051 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:32.051 [Task submitter] INFO  nextflow.Session - [81/19169b] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro264_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:32.261 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1135; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro264_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/81/19169b8542f318b739b525acd85b69]
Oct-22 19:28:32.267 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:32.267 [Task submitter] INFO  nextflow.Session - [f4/b67643] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro249_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:32.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1142; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro249_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f4/b67643ab3ba2d9fa19a1a474db262e]
Oct-22 19:28:32.501 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:32.501 [Task submitter] INFO  nextflow.Session - [a3/440b3d] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro245_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:32.721 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1139; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro245_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a3/440b3deff05bce50703459543d8221]
Oct-22 19:28:32.726 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:32.726 [Task submitter] INFO  nextflow.Session - [38/b1e1bc] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro250_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:32.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1143; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro250_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/b1e1bcd111b5f17d12440ffee9b5ad]
Oct-22 19:28:32.961 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:32.961 [Task submitter] INFO  nextflow.Session - [04/b42975] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro243_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:33.211 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1141; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro243_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/b4297576a3aaa8840bef65021a2039]
Oct-22 19:28:33.217 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:33.217 [Task submitter] INFO  nextflow.Session - [41/3b3b61] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro271_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:33.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1144; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro271_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/3b3b61b0422d9f3d8158ba2737165e]
Oct-22 19:28:33.437 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:33.437 [Task submitter] INFO  nextflow.Session - [cc/1b95d6] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro254_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:33.668 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1145; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro254_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cc/1b95d6e3836bca6fccdbee7766265a]
Oct-22 19:28:33.673 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:33.673 [Task submitter] INFO  nextflow.Session - [ab/40ee3e] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro285_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:33.907 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1146; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro285_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ab/40ee3eae0e49271c38c6e3516d1876]
Oct-22 19:28:33.913 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:33.913 [Task submitter] INFO  nextflow.Session - [26/d422b3] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro241_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:34.168 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1148; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro241_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/d422b3c9213090aa936c768b7ec03e]
Oct-22 19:28:34.172 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:34.178 [Task submitter] INFO  nextflow.Session - [70/762d46] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro247_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:34.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1147; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro247_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/762d46014d90e7e7ed9a4cc0149b48]
Oct-22 19:28:34.423 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:34.423 [Task submitter] INFO  nextflow.Session - [b7/89a41f] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro251_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:34.648 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1149; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro251_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b7/89a41fd9a3ed42265e58a57628790b]
Oct-22 19:28:34.652 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:34.652 [Task submitter] INFO  nextflow.Session - [76/a89e82] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro235_trimmed_all-counts)
Oct-22 19:28:34.761 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1158; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro235_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/76/a89e82312fa071f66a12d9c8833870]
Oct-22 19:28:34.766 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:34.766 [Task submitter] INFO  nextflow.Session - [7b/edef40] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro232_trimmed_all-counts)
Oct-22 19:28:34.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1152; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro232_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7b/edef40de90920a2f38465e2cb9ba3e]
Oct-22 19:28:34.877 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:34.877 [Task submitter] INFO  nextflow.Session - [f2/d9ea8f] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro237_trimmed_all-counts)
Oct-22 19:28:34.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1161; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro237_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f2/d9ea8f9a947f003a12ff6196ee2dc0]
Oct-22 19:28:34.989 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:34.989 [Task submitter] INFO  nextflow.Session - [00/94e7c3] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro248_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:35.210 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1150; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro248_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/00/94e7c3afe1d6e025df31b9bcce5617]
Oct-22 19:28:35.214 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:35.215 [Task submitter] INFO  nextflow.Session - [90/4f424f] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro234_trimmed_all-counts)
Oct-22 19:28:35.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1155; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro234_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/4f424fd59c834234402d2b3d714be4]
Oct-22 19:28:35.331 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:35.331 [Task submitter] INFO  nextflow.Session - [23/63a752] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro233_trimmed_all-counts)
Oct-22 19:28:35.504 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1153; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro233_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/23/63a752c748acaf6dab9dfe446b570e]
Oct-22 19:28:35.508 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:35.508 [Task submitter] INFO  nextflow.Session - [f8/c35b19] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro238_trimmed_all-counts)
Oct-22 19:28:35.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1163; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro238_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f8/c35b19c6f2456446e0cdd5d39c8e51]
Oct-22 19:28:35.681 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:35.681 [Task submitter] INFO  nextflow.Session - [92/4ba7fe] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro236_trimmed_all-counts)
Oct-22 19:28:35.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1159; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro236_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/4ba7fe0ffba0bed7a90ce65e9a1b4c]
Oct-22 19:28:35.822 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:35.823 [Task submitter] INFO  nextflow.Session - [25/376f3d] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro239_trimmed_all-counts)
Oct-22 19:28:35.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1166; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro239_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/25/376f3d768f699f23c6f0dcefeb0781]
Oct-22 19:28:35.980 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:35.980 [Task submitter] INFO  nextflow.Session - [90/9cf154] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro270_trimmed_accepted_hits_tRNAs)
Oct-22 19:28:36.372 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1151; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro270_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/90/9cf1546245ad825fbdbdf677560daf]
Oct-22 19:28:36.376 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:36.376 [Task submitter] INFO  nextflow.Session - [7e/5a3217] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro240_trimmed_all-counts)
Oct-22 19:28:36.490 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1170; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro240_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/5a3217c67ce0e4c54041d3671b5d44]
Oct-22 19:28:36.496 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:36.496 [Task submitter] INFO  nextflow.Session - [fc/3a1b34] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro242_trimmed_all-counts)
Oct-22 19:28:36.671 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1175; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro242_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/3a1b34ece55a7563c66497c3f885f6]
Oct-22 19:28:36.676 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:36.676 [Task submitter] INFO  nextflow.Session - [61/fe54c8] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro241_trimmed_all-counts)
Oct-22 19:28:36.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1173; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro241_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/61/fe54c85cdc719704eaafab901b08f4]
Oct-22 19:28:36.788 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:36.788 [Task submitter] INFO  nextflow.Session - [41/df1327] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro243_trimmed_all-counts)
Oct-22 19:28:36.898 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1176; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro243_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/df13272ce2ac87b0a7a20cad4879ff]
Oct-22 19:28:36.902 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:28:36.902 [Task submitter] INFO  nextflow.Session - [fa/d92fee] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro236_trimmed_all-counts)
Oct-22 19:29:04.998 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1051; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro281_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4d/859f8bfe835ce6027b4820f9e749d2]
Oct-22 19:29:05.001 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:05.001 [Task submitter] INFO  nextflow.Session - [89/c3969e] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro245_trimmed_all-counts)
Oct-22 19:29:05.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1179; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro245_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/89/c3969efe5e793d9b735342e0d3f1de]
Oct-22 19:29:05.158 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:05.158 [Task submitter] INFO  nextflow.Session - [68/ef5ce0] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro237_trimmed_all-counts)
Oct-22 19:29:08.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1093; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro213_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d6/8372e73e508a98fd9cb0e99f7f81fe]
Oct-22 19:29:08.855 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:08.856 [Task submitter] INFO  nextflow.Session - [03/60da8d] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro269_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:09.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1154; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro269_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/03/60da8df74e2664c922b1f97179f28e]
Oct-22 19:29:09.132 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:09.133 [Task submitter] INFO  nextflow.Session - [19/818b64] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro239_trimmed_all-counts)
Oct-22 19:29:09.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1123; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro228_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/edb853c94931ad88bf000c790d8115]
Oct-22 19:29:09.230 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:09.231 [Task submitter] INFO  nextflow.Session - [67/b2fa2f] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro238_trimmed_all-counts)
Oct-22 19:29:09.987 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1140; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro235_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6b/8c173173848571e879d63663a3fd97]
Oct-22 19:29:09.991 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:09.991 [Task submitter] INFO  nextflow.Session - [6a/3f941a] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro266_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.016 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1107; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro220_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/ce4f42c28442e28cbef979b0d2e492]
Oct-22 19:29:10.019 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.019 [Task submitter] INFO  nextflow.Session - [b8/c7a5b0] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro244_trimmed_all-counts)
Oct-22 19:29:10.068 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1220; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro261_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/cda3d5fe2bf709e6b8bcf3a7013ee1]
Oct-22 19:29:10.070 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.070 [Task submitter] INFO  nextflow.Session - [43/a447f8] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro246_trimmed_all-counts)
Oct-22 19:29:10.089 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1094; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro214_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/03/7ecb75bdfc1919d4fbbe4c48a4e8e6]
Oct-22 19:29:10.091 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.092 [Task submitter] INFO  nextflow.Session - [8d/d9f51f] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro247_trimmed_all-counts)
Oct-22 19:29:10.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1114; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro223_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/92ac0a52ef8759007169ffd34da730]
Oct-22 19:29:10.100 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.101 [Task submitter] INFO  nextflow.Session - [f3/6b351e] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro248_trimmed_all-counts)
Oct-22 19:29:10.108 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1097; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro216_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0d/053cfbb778399d36277aeac9b913d9]
Oct-22 19:29:10.112 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.112 [Task submitter] INFO  nextflow.Session - [43/4a4437] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro267_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.170 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1178; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro244_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/c7a5b0fc1ed7bf5bd60663c0436840]
Oct-22 19:29:10.178 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.178 [Task submitter] INFO  nextflow.Session - [92/97ab7f] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro240_trimmed_all-counts)
Oct-22 19:29:10.231 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1181; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro246_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/a447f8409a926206f57863f5e6b85b]
Oct-22 19:29:10.234 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.234 [Task submitter] INFO  nextflow.Session - [47/ed2ffe] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro272_trimmed_all-counts)
Oct-22 19:29:10.276 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1105; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro219_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5f/cd6f1a496a30ff7926cbbb10f5de67]
Oct-22 19:29:10.283 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.283 [Task submitter] INFO  nextflow.Session - [2c/86300b] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro259_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1183; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro247_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/d9f51f56cee6c3b5bbed683c2cb6e7]
Oct-22 19:29:10.307 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.308 [Task submitter] INFO  nextflow.Session - [e8/305eee] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro241_trimmed_all-counts)
Oct-22 19:29:10.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1185; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro248_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f3/6b351e1d36f8f4466ebc74f7db97c4]
Oct-22 19:29:10.333 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.333 [Task submitter] INFO  nextflow.Session - [62/d6e84d] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro260_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.365 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1111; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro222_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/88/2c2166dcddbdef17533ea15ad25884]
Oct-22 19:29:10.373 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.373 [Task submitter] INFO  nextflow.Session - [11/27c9e4] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro242_trimmed_all-counts)
Oct-22 19:29:10.405 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1224; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro266_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6a/3f941a3a04453e4d4f37cac767670b]
Oct-22 19:29:10.412 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.413 [Task submitter] INFO  nextflow.Session - [2e/864d88] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro273_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.418 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1109; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro221_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/e6a9f637578b07f5a473a511a738c7]
Oct-22 19:29:10.425 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.427 [Task submitter] INFO  nextflow.Session - [a2/2ff8f8] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro252_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1249; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro272_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/47/ed2ffe31a5599b881152edbe8c3ade]
Oct-22 19:29:10.486 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.486 [Task submitter] INFO  nextflow.Session - [11/fc9f92] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro254_trimmed_all-counts)
Oct-22 19:29:10.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1129; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro231_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/fee5b5fccfaa65817da72ee98a5559]
Oct-22 19:29:10.506 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.507 [Task submitter] INFO  nextflow.Session - [26/ab4b3b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro251_trimmed_all-counts)
Oct-22 19:29:10.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1100; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro217_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/72/110b2f542c5bb9c9844a834bc30fe4]
Oct-22 19:29:10.542 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.543 [Task submitter] INFO  nextflow.Session - [20/45c779] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro252_trimmed_all-counts)
Oct-22 19:29:10.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1128; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro230_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/44d651110591c08bce2c54048ad433]
Oct-22 19:29:10.546 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.547 [Task submitter] INFO  nextflow.Session - [97/63c000] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro249_trimmed_all-counts)
Oct-22 19:29:10.558 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1120; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro226_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/98/0330f5c6beecbd787d62f0fef3ad22]
Oct-22 19:29:10.561 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.561 [Task submitter] INFO  nextflow.Session - [71/144251] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro268_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1115; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro224_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/11272f251589f29674320ce3c0283e]
Oct-22 19:29:10.614 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.614 [Task submitter] INFO  nextflow.Session - [7d/58387e] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro253_trimmed_all-counts)
Oct-22 19:29:10.731 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1164; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro267_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/4a4437fca65e540ab51fb04f16ff48]
Oct-22 19:29:10.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.734 [Task submitter] INFO  nextflow.Session - [77/2d9d03] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro261_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1189; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro251_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/26/ab4b3b06fa63d4dcd3918beaee15f9]
Oct-22 19:29:10.779 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.779 [Task submitter] INFO  nextflow.Session - [fa/df61f3] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro258_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.795 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1193; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro254_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/fc9f928216c137b0dd0721384d9d6f]
Oct-22 19:29:10.802 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.802 [Task submitter] INFO  nextflow.Session - [5a/9e1725] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro262_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1213; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro257_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/278985240bda638d32e3ec5fa95bc9]
Oct-22 19:29:10.824 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.825 [Task submitter] INFO  nextflow.Session - [8c/66980e] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro243_trimmed_all-counts)
Oct-22 19:29:10.828 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1125; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro229_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/3149f9769476a4ec6fcf18e63b5686]
Oct-22 19:29:10.836 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.837 [Task submitter] INFO  nextflow.Session - [76/cd39a2] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro255_trimmed_all-counts)
Oct-22 19:29:10.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1096; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro215_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/331ca4246a229c90b1eccde70ef458]
Oct-22 19:29:10.880 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.880 [Task submitter] INFO  nextflow.Session - [84/e535fd] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro253_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:10.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1169; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro260_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/62/d6e84d7d041be6bb28112e2af1455f]
Oct-22 19:29:10.903 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.904 [Task submitter] INFO  nextflow.Session - [5e/553746] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro244_trimmed_all-counts)
Oct-22 19:29:10.920 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1167; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro259_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2c/86300bee486f4b1b0501b5d2380640]
Oct-22 19:29:10.922 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.923 [Task submitter] INFO  nextflow.Session - [59/e2d9fe] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro256_trimmed_all-counts)
Oct-22 19:29:10.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1174; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro273_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/864d885d6f1594f6e4476d87d9e03e]
Oct-22 19:29:10.928 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.928 [Task submitter] INFO  nextflow.Session - [8d/9d8b4e] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro248_trimmed_all-counts)
Oct-22 19:29:10.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1187; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro249_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/97/63c000bd03353a1c80cedc4dbeb1c2]
Oct-22 19:29:10.935 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.935 [Task submitter] INFO  nextflow.Session - [be/d41a6a] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro246_trimmed_all-counts)
Oct-22 19:29:10.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1192; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro253_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/58387ec6cc65abcc52379ff28f7079]
Oct-22 19:29:10.964 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.964 [Task submitter] INFO  nextflow.Session - [2e/69a575] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro245_trimmed_all-counts)
Oct-22 19:29:10.964 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1190; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro252_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/20/45c779824511b941ab51e9833461fc]
Oct-22 19:29:10.968 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:10.968 [Task submitter] INFO  nextflow.Session - [d3/3ec63b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro285_trimmed_all-counts)
Oct-22 19:29:11.078 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1200; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro255_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/76/cd39a2120d2b26b8aa1c72c21a028f]
Oct-22 19:29:11.082 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.082 [Task submitter] INFO  nextflow.Session - [a3/27b254] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro249_trimmed_all-counts)
Oct-22 19:29:11.117 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1172; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro252_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/2ff8f8e0aa68d9389ab868628972c5]
Oct-22 19:29:11.119 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.120 [Task submitter] INFO  nextflow.Session - [83/fbd363] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro247_trimmed_all-counts)
Oct-22 19:29:11.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1103; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro218_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/41/2d06c8e03254520d46a807785c366e]
Oct-22 19:29:11.160 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.160 [Task submitter] INFO  nextflow.Session - [bf/82154e] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro257_trimmed_all-counts)
Oct-22 19:29:11.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1136; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro234_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ab/febb4d996c39edd84a26b22abe5e51]
Oct-22 19:29:11.219 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.219 [Task submitter] INFO  nextflow.Session - [70/20c753] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro250_trimmed_all-counts)
Oct-22 19:29:11.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1117; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro225_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/55225ee112976aaf276d985dff2caf]
Oct-22 19:29:11.241 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.241 [Task submitter] INFO  nextflow.Session - [07/33a122] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro251_trimmed_all-counts)
Oct-22 19:29:11.251 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1177; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro268_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/144251c6289e5d4f12afb44b6516c6]
Oct-22 19:29:11.253 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.253 [Task submitter] INFO  nextflow.Session - [46/cf42d5] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro252_trimmed_all-counts)
Oct-22 19:29:11.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1201; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro256_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/59/e2d9feb1cff0c05d885d3494d1350d]
Oct-22 19:29:11.272 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.272 [Task submitter] INFO  nextflow.Session - [a2/7330c1] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro258_trimmed_all-counts)
Oct-22 19:29:11.274 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1180; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro261_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/77/2d9d03ceba9ad91434e7820e9d3859]
Oct-22 19:29:11.276 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.276 [Task submitter] INFO  nextflow.Session - [d0/e9061b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro259_trimmed_all-counts)
Oct-22 19:29:11.317 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1274; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro285_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/3ec63bc2fb4966e089b71eab108fcf]
Oct-22 19:29:11.320 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.320 [Task submitter] INFO  nextflow.Session - [33/606623] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro260_trimmed_all-counts)
Oct-22 19:29:11.367 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1119; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro227_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/f565c539d3653c23a7c5aa354ec11c]
Oct-22 19:29:11.373 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.373 [Task submitter] INFO  nextflow.Session - [e0/d7e0d4] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro253_trimmed_all-counts)
Oct-22 19:29:11.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1205; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro257_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bf/82154e152745aa5b7d3948d9dd8ba4]
Oct-22 19:29:11.380 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.381 [Task submitter] INFO  nextflow.Session - [e8/217ce7] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro255_trimmed_all-counts)
Oct-22 19:29:11.423 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1184; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro262_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5a/9e1725fa22be1e0c3a287e28634614]
Oct-22 19:29:11.425 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.426 [Task submitter] INFO  nextflow.Session - [54/053367] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro254_trimmed_all-counts)
Oct-22 19:29:11.428 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1182; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro258_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fa/df61f3402af1d111d25a44fc915832]
Oct-22 19:29:11.431 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.431 [Task submitter] INFO  nextflow.Session - [99/ac46be] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro256_trimmed_all-counts)
Oct-22 19:29:11.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1191; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro253_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/84/e535fd6a517db6d2a4d4acf0350fb7]
Oct-22 19:29:11.500 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1206; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro258_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/7330c1818a0b6b6b9127ad92a45223]
Oct-22 19:29:11.501 [Task submitter] INFO  nextflow.Session - [30/b1b957] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro257_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:11.504 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.504 [Task submitter] INFO  nextflow.Session - [ee/9f6dca] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro258_trimmed_all-counts)
Oct-22 19:29:11.520 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1208; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro260_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/606623f19567a8eab3240b316bd46a]
Oct-22 19:29:11.522 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.522 [Task submitter] INFO  nextflow.Session - [d0/49070f] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro276_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:11.524 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1207; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro259_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/e9061b8e430e7eace05aa6e62d8890]
Oct-22 19:29:11.527 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.528 [Task submitter] INFO  nextflow.Session - [bb/bce7b0] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro259_trimmed_all-counts)
Oct-22 19:29:11.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1134; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro233_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f5/6733400ca6fcc8283808351d2900e6]
Oct-22 19:29:11.659 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.659 [Task submitter] INFO  nextflow.Session - [1b/1f1477] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro260_trimmed_all-counts)
Oct-22 19:29:11.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1214; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro257_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/30/b1b957a694cee743ff3a3369c92c16]
Oct-22 19:29:11.866 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.866 [Task submitter] INFO  nextflow.Session - [69/87adb3] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro275_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:11.872 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1215; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro276_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/49070f5e3a17f589e6ea15fb9852f3]
Oct-22 19:29:11.876 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.876 [Task submitter] INFO  nextflow.Session - [43/ccabb7] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro262_trimmed_all-counts)
Oct-22 19:29:11.960 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1133; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro232_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/18884143a9cf1e8fd2489488772b32]
Oct-22 19:29:11.965 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:11.965 [Task submitter] INFO  nextflow.Session - [d0/54635b] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro263_trimmed_all-counts)
Oct-22 19:29:12.255 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1219; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro275_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/87adb370c9fcbeec520d4f7952472a]
Oct-22 19:29:12.258 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:12.258 [Task submitter] INFO  nextflow.Session - [e4/e8cbb0] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro264_trimmed_all-counts)
Oct-22 19:29:17.480 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1156; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro236_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fa/d92fee7ff4911f894ef337e11ae625]
Oct-22 19:29:17.485 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:17.485 [Task submitter] INFO  nextflow.Session - [ed/6dc869] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro261_trimmed_all-counts)
Oct-22 19:29:17.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1236; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro261_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ed/6dc86918ff10d58898af194e62e7ec]
Oct-22 19:29:17.599 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:17.599 [Task submitter] INFO  nextflow.Session - [a9/8b3a7c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro262_trimmed_all-counts)
Oct-22 19:29:17.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1237; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro262_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a9/8b3a7cca095c0cdc4b412e256cf488]
Oct-22 19:29:17.717 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:17.717 [Task submitter] INFO  nextflow.Session - [32/8b3e06] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro263_trimmed_all-counts)
Oct-22 19:29:17.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1238; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro263_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/8b3e067d0684ef639f4e1af47702f7]
Oct-22 19:29:17.828 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:17.828 [Task submitter] INFO  nextflow.Session - [b8/7aec82] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro264_trimmed_all-counts)
Oct-22 19:29:17.936 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1240; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro264_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/7aec82be65968e30df8113d631fc0b]
Oct-22 19:29:17.941 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:17.941 [Task submitter] INFO  nextflow.Session - [0b/d345ec] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro265_trimmed_all-counts)
Oct-22 19:29:18.066 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1241; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro265_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0b/d345ec43222c28e7d84676d1446e6e]
Oct-22 19:29:18.069 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:18.069 [Task submitter] INFO  nextflow.Session - [cb/9aee2a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro266_trimmed_all-counts)
Oct-22 19:29:18.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1242; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro266_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cb/9aee2ad6eeb5a6b5e36021be8c3478]
Oct-22 19:29:18.211 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:18.212 [Task submitter] INFO  nextflow.Session - [66/6bcb91] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro278_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:18.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1225; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro278_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/66/6bcb91aca688c6aeada2a898d51d3f]
Oct-22 19:29:18.622 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:18.622 [Task submitter] INFO  nextflow.Session - [f7/86a64a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro267_trimmed_all-counts)
Oct-22 19:29:18.775 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1243; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro267_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/86a64a5f924845226ac888f8fa2220]
Oct-22 19:29:18.778 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:18.779 [Task submitter] INFO  nextflow.Session - [9f/5fd73f] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro274_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:19.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1226; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro274_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/5fd73f81f21dbe1f21b8f3e8ebdbd5]
Oct-22 19:29:19.115 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:19.116 [Task submitter] INFO  nextflow.Session - [df/065b84] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro268_trimmed_all-counts)
Oct-22 19:29:19.229 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1244; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro268_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/df/065b84b13686109533c22717cd502b]
Oct-22 19:29:19.234 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:19.235 [Task submitter] INFO  nextflow.Session - [ca/887f4a] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro280_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:19.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1227; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro280_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ca/887f4a121de44e0af8b32e0aa02412]
Oct-22 19:29:19.478 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:19.479 [Task submitter] INFO  nextflow.Session - [11/e86d53] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro282_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:19.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1228; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro282_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/e86d534da90956ebeaa39bfffdd0f0]
Oct-22 19:29:19.720 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:19.720 [Task submitter] INFO  nextflow.Session - [33/c85d7c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro270_trimmed_all-counts)
Oct-22 19:29:19.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1247; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro270_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/c85d7ccd8acfd61421350b41fc9b85]
Oct-22 19:29:19.853 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:19.853 [Task submitter] INFO  nextflow.Session - [23/0cb23d] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro271_trimmed_all-counts)
Oct-22 19:29:19.994 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1248; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro271_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/23/0cb23da25101fc08aaed3e5823c25a]
Oct-22 19:29:19.996 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:19.997 [Task submitter] INFO  nextflow.Session - [57/79af81] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro269_trimmed_all-counts)
Oct-22 19:29:20.132 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1246; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro269_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/57/79af81f4e5f4a4ca0bc9eb6e4474e9]
Oct-22 19:29:20.135 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:20.135 [Task submitter] INFO  nextflow.Session - [c4/e69c52] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro284_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:20.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1229; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro284_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c4/e69c528b78af99a926a7ce78be1852]
Oct-22 19:29:20.507 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:20.507 [Task submitter] INFO  nextflow.Session - [ba/2db222] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro263_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:20.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1231; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro263_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/2db222659955c8c55d000a1c6ddabe]
Oct-22 19:29:20.766 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:20.767 [Task submitter] INFO  nextflow.Session - [27/0945d6] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro273_trimmed_all-counts)
Oct-22 19:29:20.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1251; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro273_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/27/0945d6d844a60d92a44e60622e3ec5]
Oct-22 19:29:20.881 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:20.881 [Task submitter] INFO  nextflow.Session - [eb/cc1399] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro286_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:21.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1230; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro286_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/eb/cc13990819401540ee5669d52eb35b]
Oct-22 19:29:21.114 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:21.114 [Task submitter] INFO  nextflow.Session - [ff/2722c7] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro283_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:21.353 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1232; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro283_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ff/2722c757da0daa42350237adcb6e4b]
Oct-22 19:29:21.357 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:21.358 [Task submitter] INFO  nextflow.Session - [de/2a80e0] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro279_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:21.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1233; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro279_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/de/2a80e03dfb06aa8f239454bdb20ad9]
Oct-22 19:29:21.676 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:21.676 [Task submitter] INFO  nextflow.Session - [33/c7f996] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro229_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:21.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1235; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro229_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/c7f9962ab73914669319305c2eba9a]
Oct-22 19:29:21.915 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:21.915 [Task submitter] INFO  nextflow.Session - [31/af12d5] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro272_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:22.148 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1234; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro272_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/31/af12d550b4adc7783fffe6214984b8]
Oct-22 19:29:22.152 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:22.153 [Task submitter] INFO  nextflow.Session - [6c/c17cb6] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro274_trimmed_all-counts)
Oct-22 19:29:22.261 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1257; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro274_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6c/c17cb6fb69a6ed0946720226a44cd9]
Oct-22 19:29:22.266 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:22.267 [Task submitter] INFO  nextflow.Session - [71/b7ce21] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro277_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:22.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1239; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro277_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/71/b7ce2189c00ecb7996458a64054fcd]
Oct-22 19:29:22.561 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:22.562 [Task submitter] INFO  nextflow.Session - [f9/295fae] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro275_trimmed_all-counts)
Oct-22 19:29:22.740 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1258; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro275_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f9/295fae1c90d93b3a850e6b060ff94b]
Oct-22 19:29:22.745 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:22.745 [Task submitter] INFO  nextflow.Session - [32/1e6a21] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro277_trimmed_all-counts)
Oct-22 19:29:22.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1260; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro277_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/1e6a21a5f43270a778b9697dd933b9]
Oct-22 19:29:22.858 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:22.858 [Task submitter] INFO  nextflow.Session - [cf/8f3df0] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro276_trimmed_all-counts)
Oct-22 19:29:22.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1259; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro276_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/8f3df0910bb809a65abfce2e140cac]
Oct-22 19:29:22.982 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:22.983 [Task submitter] INFO  nextflow.Session - [a7/af8abc] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro278_trimmed_all-counts)
Oct-22 19:29:23.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1263; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro278_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/af8abc0f5c869154c7821cef80c6a0]
Oct-22 19:29:23.103 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:23.103 [Task submitter] INFO  nextflow.Session - [33/a4e364] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro265_trimmed_all-counts)
Oct-22 19:29:46.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1157; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro237_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/68/ef5ce068521abdfc414573651bc600]
Oct-22 19:29:46.812 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:46.812 [Task submitter] INFO  nextflow.Session - [43/fea9d7] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro267_trimmed_all-counts)
Oct-22 19:29:50.238 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1160; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro238_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/67/b2fa2f85c822392c3c5f90e54b6c8e]
Oct-22 19:29:50.241 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:50.242 [Task submitter] INFO  nextflow.Session - [69/9c8737] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro266_trimmed_all-counts)
Oct-22 19:29:50.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1162; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro239_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/19/818b64c8f48c2463067f8a2d3f42ef]
Oct-22 19:29:50.366 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:50.367 [Task submitter] INFO  nextflow.Session - [b4/514a40] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro287_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:50.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1218; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro260_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1b/1f1477adc2d417f9caa282cdf12469]
Oct-22 19:29:50.733 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:50.733 [Task submitter] INFO  nextflow.Session - [8e/0ab4e3] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro268_trimmed_all-counts)
Oct-22 19:29:50.889 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1253; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro287_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/514a40ed9991d91fbf8992929e0054]
Oct-22 19:29:50.892 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:50.892 [Task submitter] INFO  nextflow.Session - [96/b81b93] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro281_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:51.498 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1256; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro281_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/96/b81b93e8f3ce83387818a8bb19cca0]
Oct-22 19:29:51.504 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.505 [Task submitter] INFO  nextflow.Session - [7d/e80334] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro269_trimmed_all-counts)
Oct-22 19:29:51.661 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1186; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro243_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8c/66980e986206b0dce652fd6b50503d]
Oct-22 19:29:51.667 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.668 [Task submitter] INFO  nextflow.Session - [19/df102b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro279_trimmed_all-counts)
Oct-22 19:29:51.696 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1168; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro241_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/305eeee2b0c415d4cbaf6677ccfdf1]
Oct-22 19:29:51.699 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.699 [Task submitter] INFO  nextflow.Session - [0c/629827] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro280_trimmed_all-counts)
Oct-22 19:29:51.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1196; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro246_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/be/d41a6a0bd1763688bc017a46e79fcd]
Oct-22 19:29:51.709 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.709 [Task submitter] INFO  nextflow.Session - [33/f5424e] Submitted process > RAW_COUNTS_TO_PROPORTIONS (RNAneuro288_trimmed_accepted_hits_tRNAs)
Oct-22 19:29:51.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1171; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro242_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/11/27c9e4be234af16bb1f27e056da41a]
Oct-22 19:29:51.790 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.790 [Task submitter] INFO  nextflow.Session - [04/2a562d] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro281_trimmed_all-counts)
Oct-22 19:29:51.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1266; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro279_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/19/df102bc07c84f5bb8c327d4707d4c0]
Oct-22 19:29:51.823 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.823 [Task submitter] INFO  nextflow.Session - [65/b35323] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro271_trimmed_all-counts)
Oct-22 19:29:51.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1267; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro280_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0c/62982764a51b68225ead44141171f1]
Oct-22 19:29:51.886 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.886 [Task submitter] INFO  nextflow.Session - [8b/2e8a6c] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro270_trimmed_all-counts)
Oct-22 19:29:51.890 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1165; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro240_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/92/97ab7f8d82c2b09848a9f9493b1f63]
Oct-22 19:29:51.901 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.902 [Task submitter] INFO  nextflow.Session - [bb/bea8d0] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro282_trimmed_all-counts)
Oct-22 19:29:51.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1203; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro251_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/33a122207abff1f64c2b3f34fabe8c]
Oct-22 19:29:51.928 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.928 [Task submitter] INFO  nextflow.Session - [b5/9d2c92] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro283_trimmed_all-counts)
Oct-22 19:29:51.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1210; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro254_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/053367cff2a7d514f5773b50600275]
Oct-22 19:29:51.960 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.960 [Task submitter] INFO  nextflow.Session - [36/2453e5] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro272_trimmed_all-counts)
Oct-22 19:29:51.975 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1268; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro281_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/04/2a562dbec61d27e03cf23565ce114d]
Oct-22 19:29:51.978 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:51.978 [Task submitter] INFO  nextflow.Session - [bb/33b4fc] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro284_trimmed_all-counts)
Oct-22 19:29:52.144 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1198; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro248_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8d/9d8b4ef4d7e5b0e8082681a24e4082]
Oct-22 19:29:52.147 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.147 [Task submitter] INFO  nextflow.Session - [ba/64315b] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro273_trimmed_all-counts)
Oct-22 19:29:52.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1211; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro255_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e8/217ce79f4f3824dbcbaf6783b44902]
Oct-22 19:29:52.191 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.191 [Task submitter] INFO  nextflow.Session - [54/5a0461] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro274_trimmed_all-counts)
Oct-22 19:29:52.208 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1269; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro282_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/bea8d04271013709b73c484be3fcf0]
Oct-22 19:29:52.211 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.211 [Task submitter] INFO  nextflow.Session - [bd/23a5d2] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro286_trimmed_all-counts)
Oct-22 19:29:52.216 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1270; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro283_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b5/9d2c92598891fd08e81e9cf40b2192]
Oct-22 19:29:52.221 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.221 [Task submitter] INFO  nextflow.Session - [d1/df5dfc] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro276_trimmed_all-counts)
Oct-22 19:29:52.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1217; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro259_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/bce7b09ada38ab1fc5ff4812873d36]
Oct-22 19:29:52.237 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.238 [Task submitter] INFO  nextflow.Session - [73/9e310e] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro287_trimmed_all-counts)
Oct-22 19:29:52.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1261; name: RAW_COUNTS_TO_PROPORTIONS (RNAneuro288_trimmed_accepted_hits_tRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/f5424e0e72640753af8551b8a1fbd5]
Oct-22 19:29:52.254 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.254 [Task submitter] INFO  nextflow.Session - [33/8e7a86] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro275_trimmed_all-counts)
Oct-22 19:29:52.296 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1204; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro252_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/46/cf42d5807c42266eeda15ece48236e]
Oct-22 19:29:52.299 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.299 [Task submitter] INFO  nextflow.Session - [4c/15eb08] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro277_trimmed_all-counts)
Oct-22 19:29:52.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1272; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro284_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bb/33b4fccee7d3386f63a4c47b6ed567]
Oct-22 19:29:52.311 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.312 [Task submitter] INFO  nextflow.Session - [c2/de0a38] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro278_trimmed_all-counts)
Oct-22 19:29:52.345 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1194; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro244_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5e/55374686a55994ee6250b86bcca727]
Oct-22 19:29:52.347 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.347 [Task submitter] INFO  nextflow.Session - [b6/382cc2] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro288_trimmed_all-counts)
Oct-22 19:29:52.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1212; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro256_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/99/ac46bea281ffbe7a19ffea26216624]
Oct-22 19:29:52.373 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.373 [Task submitter] INFO  nextflow.Session - [9f/f2bf53] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro280_trimmed_all-counts)
Oct-22 19:29:52.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1199; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro249_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a3/27b254d919cdc3ae86b2f1f259fe88]
Oct-22 19:29:52.413 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.413 [Task submitter] INFO  nextflow.Session - [08/88313f] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro281_trimmed_all-counts)
Oct-22 19:29:52.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1202; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro250_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/70/20c75352ba4e334057a6542046842c]
Oct-22 19:29:52.432 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.433 [Task submitter] INFO  nextflow.Session - [95/a6ec6b] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro279_trimmed_all-counts)
Oct-22 19:29:52.441 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1195; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro245_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/69a575d65ec4ffa36b748f7b20c339]
Oct-22 19:29:52.444 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.444 [Task submitter] INFO  nextflow.Session - [9a/f38221] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro282_trimmed_all-counts)
Oct-22 19:29:52.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1278; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro286_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/bd/23a5d289708c9df98cc750dfa147dc]
Oct-22 19:29:52.461 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.461 [Task submitter] INFO  nextflow.Session - [78/94a95a] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro283_trimmed_all-counts)
Oct-22 19:29:52.481 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1281; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro287_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/73/9e310ec310010212052ef3576d15e0]
Oct-22 19:29:52.484 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.484 [Task submitter] INFO  nextflow.Session - [1d/e89d35] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro285_trimmed_all-counts)
Oct-22 19:29:52.521 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1209; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro253_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e0/d7e0d40a34becb842843b8796c072e]
Oct-22 19:29:52.523 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.523 [Task submitter] INFO  nextflow.Session - [a7/4f31e0] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro284_trimmed_all-counts)
Oct-22 19:29:52.525 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1285; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro288_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b6/382cc260491956d4dbd2fb1f28da94]
Oct-22 19:29:52.527 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.527 [Task submitter] INFO  nextflow.Session - [5c/67960e] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro286_trimmed_all-counts)
Oct-22 19:29:52.601 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1216; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro258_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/9f6dca51ae899c5fe261201077c247]
Oct-22 19:29:52.603 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.603 [Task submitter] INFO  nextflow.Session - [91/691a25] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro287_trimmed_all-counts)
Oct-22 19:29:52.621 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1197; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro247_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/fbd3637ed09e5c8606726c22eff091]
Oct-22 19:29:52.623 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:52.624 [Task submitter] INFO  nextflow.Session - [96/72696b] Submitted process > RAW_COUNTS_TO_NORM_COUNTS (RNAneuro288_trimmed_all-counts)
Oct-22 19:29:53.068 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1222; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro263_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d0/54635bcd19b68b30beaad2e0d1d0f3]
Oct-22 19:29:53.072 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:53.073 [Task submitter] INFO  nextflow.Session - [62/017f50] Submitted process > PLOT_TRNA_ALL_PLOTS (RNAneuro288_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:29:53.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1221; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro262_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/ccabb7b19fab8d8d407fe61aa50923]
Oct-22 19:29:53.136 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:53.136 [Task submitter] INFO  nextflow.Session - [50/93511f] Submitted process > PREDICT_TSRNA_TYPE
Oct-22 19:29:53.187 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1061; name: GENERATE_NCRNA_DEPTH_FILES (RNAneuro288_trimmed_accepted_hits_ncRNAs); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/62/092d172642b947532efc8bdce20749]
Oct-22 19:29:53.189 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:53.189 [Task submitter] INFO  nextflow.Session - [9a/a6175f] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro288_trimmed_accepted_hits_tRNAs_sorted)
Oct-22 19:29:53.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1223; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro264_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/e8cbb05f47d8d2d6747b911fed6ea5]
Oct-22 19:29:53.574 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:53.574 [Task submitter] INFO  nextflow.Session - [0a/8c23a0] Submitted process > PLOT_TSRNA_LENGTHS
Oct-22 19:29:53.632 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1294; name: GENERATE_DEPTHFILE_STATS (RNAneuro288_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9a/a6175f2d2a58a0c31d245759920a5d]
Oct-22 19:29:53.635 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:53.635 [Task submitter] INFO  nextflow.Session - [eb/9c5487] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro281_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:29:56.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1297; name: GENERATE_DEPTHFILE_STATS (RNAneuro281_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/eb/9c5487fc12269b17472f65bc722908]
Oct-22 19:29:56.372 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:56.372 [Task submitter] INFO  nextflow.Session - [1e/154213] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro213_trimmed_all-counts_tpm)
Oct-22 19:29:56.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1298; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro213_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1e/1542132946d1a65579ebda9d5feca7]
Oct-22 19:29:56.501 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:56.501 [Task submitter] INFO  nextflow.Session - [c0/b90b39] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro228_trimmed_all-counts_tpm)
Oct-22 19:29:56.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1299; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro228_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c0/b90b39d9b1e018a54af7fa29ef44bc]
Oct-22 19:29:56.642 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:56.643 [Task submitter] INFO  nextflow.Session - [d9/d70949] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro235_trimmed_all-counts_tpm)
Oct-22 19:29:56.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1300; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro235_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/d70949e30755211a66e7a98f21e964]
Oct-22 19:29:56.791 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:56.791 [Task submitter] INFO  nextflow.Session - [10/f51c75] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro220_trimmed_all-counts_tpm)
Oct-22 19:29:56.941 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1301; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro220_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/f51c755ab35a819029fa7ce06461f8]
Oct-22 19:29:56.944 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:56.944 [Task submitter] INFO  nextflow.Session - [d8/4e5b45] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro261_trimmed_all-counts_tpm)
Oct-22 19:29:57.091 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1302; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro261_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d8/4e5b45cd0d6da0a4c25dbc1744c23b]
Oct-22 19:29:57.094 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.094 [Task submitter] INFO  nextflow.Session - [23/094371] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro214_trimmed_all-counts_tpm)
Oct-22 19:29:57.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1303; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro214_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/23/0943717808dc623443ccdc30791c1b]
Oct-22 19:29:57.242 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.242 [Task submitter] INFO  nextflow.Session - [32/0d7047] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro223_trimmed_all-counts_tpm)
Oct-22 19:29:57.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1304; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro223_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/32/0d7047d2deac97f0faca9c3b06854b]
Oct-22 19:29:57.398 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.399 [Task submitter] INFO  nextflow.Session - [e4/3b8d31] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro216_trimmed_all-counts_tpm)
Oct-22 19:29:57.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1305; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro216_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/3b8d315055216bb1667b8a3cfd4475]
Oct-22 19:29:57.550 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.550 [Task submitter] INFO  nextflow.Session - [f7/e8aeb8] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro219_trimmed_all-counts_tpm)
Oct-22 19:29:57.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1306; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro219_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f7/e8aeb8337fe7dede18555c99c1afe5]
Oct-22 19:29:57.696 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.696 [Task submitter] INFO  nextflow.Session - [ee/7c9679] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro222_trimmed_all-counts_tpm)
Oct-22 19:29:57.846 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1307; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro222_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ee/7c9679da428d903055b194282e7c49]
Oct-22 19:29:57.849 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.849 [Task submitter] INFO  nextflow.Session - [b4/960b0b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro221_trimmed_all-counts_tpm)
Oct-22 19:29:57.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1308; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro221_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b4/960b0b557f32ba3f69cb25dd7aceb3]
Oct-22 19:29:57.973 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:57.973 [Task submitter] INFO  nextflow.Session - [ae/c5b486] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro231_trimmed_all-counts_tpm)
Oct-22 19:29:58.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1309; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro231_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ae/c5b4863e2fedc4fc20caffa90bbbdf]
Oct-22 19:29:58.087 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.087 [Task submitter] INFO  nextflow.Session - [50/b2ad72] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro217_trimmed_all-counts_tpm)
Oct-22 19:29:58.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1310; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro217_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/50/b2ad7266ec46f5d5da4d6a081404a6]
Oct-22 19:29:58.205 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.205 [Task submitter] INFO  nextflow.Session - [df/b7c746] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro230_trimmed_all-counts_tpm)
Oct-22 19:29:58.331 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1311; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro230_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/df/b7c746a40ff5eaf144b0235455d0e8]
Oct-22 19:29:58.334 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.334 [Task submitter] INFO  nextflow.Session - [ab/cc5fdb] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro226_trimmed_all-counts_tpm)
Oct-22 19:29:58.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1312; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro226_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ab/cc5fdb87aba558bf499319457d5b1e]
Oct-22 19:29:58.471 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.471 [Task submitter] INFO  nextflow.Session - [52/be2463] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro224_trimmed_all-counts_tpm)
Oct-22 19:29:58.606 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1313; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro224_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/52/be24637623e8a59ee1da6119c13fde]
Oct-22 19:29:58.609 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.609 [Task submitter] INFO  nextflow.Session - [5d/09a373] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro229_trimmed_all-counts_tpm)
Oct-22 19:29:58.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1315; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro229_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5d/09a3730523cd4c2428f4f8a0f4b9e1]
Oct-22 19:29:58.747 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.747 [Task submitter] INFO  nextflow.Session - [4d/206397] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro257_trimmed_all-counts_tpm)
Oct-22 19:29:58.861 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1314; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro257_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4d/20639750887028b7cff5d9bb16f704]
Oct-22 19:29:58.864 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.864 [Task submitter] INFO  nextflow.Session - [10/27a5b5] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro215_trimmed_all-counts_tpm)
Oct-22 19:29:58.988 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1316; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro215_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/10/27a5b54fbd810ffdb2bfed5c2d8839]
Oct-22 19:29:58.993 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:58.993 [Task submitter] INFO  nextflow.Session - [8e/c5dc54] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro218_trimmed_all-counts_tpm)
Oct-22 19:29:59.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1317; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro218_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/c5dc548c7d80b1ab89d432ea96622e]
Oct-22 19:29:59.118 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.119 [Task submitter] INFO  nextflow.Session - [2a/36379b] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro234_trimmed_all-counts_tpm)
Oct-22 19:29:59.228 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1318; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro234_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2a/36379b089dd09db2bfd52f77bdbc34]
Oct-22 19:29:59.233 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.234 [Task submitter] INFO  nextflow.Session - [7d/4931b5] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro225_trimmed_all-counts_tpm)
Oct-22 19:29:59.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1319; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro225_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/4931b58fbba5b68ac69014a0e6f8cb]
Oct-22 19:29:59.353 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.353 [Task submitter] INFO  nextflow.Session - [38/2c8c8c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro227_trimmed_all-counts_tpm)
Oct-22 19:29:59.482 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1320; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro227_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/2c8c8c652435df8f06a9e2b1342463]
Oct-22 19:29:59.485 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.485 [Task submitter] INFO  nextflow.Session - [87/6b017a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro233_trimmed_all-counts_tpm)
Oct-22 19:29:59.570 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1293; name: PLOT_TRNA_ALL_PLOTS (RNAneuro288_trimmed_accepted_hits_tRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/62/017f505a92eba2758f48ada8ca85c4]
Oct-22 19:29:59.576 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.576 [Task submitter] INFO  nextflow.Session - [69/8e6b98] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro232_trimmed_all-counts_tpm)
Oct-22 19:29:59.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1321; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro233_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/87/6b017a6733bd0dda59603f721877e6]
Oct-22 19:29:59.643 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.643 [Task submitter] INFO  nextflow.Session - [b3/644885] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro236_trimmed_all-counts_tpm)
Oct-22 19:29:59.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1322; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro232_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/8e6b98bf388cfcddf444cdcfedc575]
Oct-22 19:29:59.825 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.825 [Task submitter] INFO  nextflow.Session - [a7/f94b4a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro237_trimmed_all-counts_tpm)
Oct-22 19:29:59.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1323; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro236_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b3/644885650fb8d4f4cfdae85d74a365]
Oct-22 19:29:59.861 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.861 [Task submitter] INFO  nextflow.Session - [07/f476cd] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro238_trimmed_all-counts_tpm)
Oct-22 19:29:59.965 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1324; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro237_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/f94b4a23e31fc18e5fc8e06cf50fc1]
Oct-22 19:29:59.969 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:29:59.970 [Task submitter] INFO  nextflow.Session - [e3/a9bf6f] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro239_trimmed_all-counts_tpm)
Oct-22 19:30:00.020 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1325; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro238_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/f476cd3ae81d1fb9ad6e8b71b6b471]
Oct-22 19:30:00.023 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.023 [Task submitter] INFO  nextflow.Session - [1a/152a73] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro260_trimmed_all-counts_tpm)
Oct-22 19:30:00.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1326; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro239_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e3/a9bf6f934a4536f2c7a859906fb840]
Oct-22 19:30:00.100 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.100 [Task submitter] INFO  nextflow.Session - [8e/d11b28] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro243_trimmed_all-counts_tpm)
Oct-22 19:30:00.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1327; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro260_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/152a7371f1d41f06ecb3751692c36b]
Oct-22 19:30:00.158 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.158 [Task submitter] INFO  nextflow.Session - [e1/3892f9] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro241_trimmed_all-counts_tpm)
Oct-22 19:30:00.236 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1328; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro243_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/d11b2830def3126d1b7635cd12bf7a]
Oct-22 19:30:00.239 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.239 [Task submitter] INFO  nextflow.Session - [59/fffd15] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro246_trimmed_all-counts_tpm)
Oct-22 19:30:00.303 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1329; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro241_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e1/3892f98884d30997b87a228cb9b0f4]
Oct-22 19:30:00.307 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.308 [Task submitter] INFO  nextflow.Session - [30/1764a4] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro242_trimmed_all-counts_tpm)
Oct-22 19:30:00.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1330; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro246_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/59/fffd1529c204b9f8f9309154e652b4]
Oct-22 19:30:00.385 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.385 [Task submitter] INFO  nextflow.Session - [16/3e6046] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro240_trimmed_all-counts_tpm)
Oct-22 19:30:00.426 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1331; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro242_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/30/1764a4bc9e3c3babc6dda7d78f1294]
Oct-22 19:30:00.431 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.432 [Task submitter] INFO  nextflow.Session - [14/563fd4] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro251_trimmed_all-counts_tpm)
Oct-22 19:30:00.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1332; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro240_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/3e604621be7d2a02bcd2a0b58d235a]
Oct-22 19:30:00.566 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.566 [Task submitter] INFO  nextflow.Session - [fe/02b19c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro254_trimmed_all-counts_tpm)
Oct-22 19:30:00.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1333; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro251_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/14/563fd424c058cfd804a6340350a0d7]
Oct-22 19:30:00.578 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.578 [Task submitter] INFO  nextflow.Session - [86/926378] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro248_trimmed_all-counts_tpm)
Oct-22 19:30:00.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1334; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro254_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fe/02b19c4b283e158a7c830d056c01bd]
Oct-22 19:30:00.706 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.706 [Task submitter] INFO  nextflow.Session - [75/58e811] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro255_trimmed_all-counts_tpm)
Oct-22 19:30:00.716 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1335; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro248_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/86/9263788bfe5350fd7347d1ed9cdd0a]
Oct-22 19:30:00.721 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.721 [Task submitter] INFO  nextflow.Session - [f0/013370] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro259_trimmed_all-counts_tpm)
Oct-22 19:30:00.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1336; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro255_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/75/58e811d9865ea9f4d3fc6c2fb257e4]
Oct-22 19:30:00.848 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.850 [Task submitter] INFO  nextflow.Session - [89/2305f9] Submitted process > STACKED_BARPLOTS
Oct-22 19:30:00.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1337; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro259_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f0/01337030211464cf424762c39c6de4]
Oct-22 19:30:00.870 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.870 [Task submitter] INFO  nextflow.Session - [8a/9c955c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro252_trimmed_all-counts_tpm)
Oct-22 19:30:00.993 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1339; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro252_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8a/9c955ce63e742970a3a099150cbe61]
Oct-22 19:30:00.995 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:00.995 [Task submitter] INFO  nextflow.Session - [5c/cd6d92] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro256_trimmed_all-counts_tpm)
Oct-22 19:30:01.119 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1341; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro256_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/cd6d921426463eb34b236825ef04af]
Oct-22 19:30:01.122 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.122 [Task submitter] INFO  nextflow.Session - [d6/a70384] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro244_trimmed_all-counts_tpm)
Oct-22 19:30:01.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1340; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro244_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d6/a70384ebff90a56a01efb5305740ba]
Oct-22 19:30:01.251 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.252 [Task submitter] INFO  nextflow.Session - [dd/83ada8] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro249_trimmed_all-counts_tpm)
Oct-22 19:30:01.371 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1342; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro249_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/dd/83ada8a1accfb9332152392c2d873d]
Oct-22 19:30:01.379 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.379 [Task submitter] INFO  nextflow.Session - [1a/08e164] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro245_trimmed_all-counts_tpm)
Oct-22 19:30:01.497 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1344; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro245_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/08e16451d6c33b92a6b8d9e1a62b9c]
Oct-22 19:30:01.499 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.499 [Task submitter] INFO  nextflow.Session - [55/180968] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro250_trimmed_all-counts_tpm)
Oct-22 19:30:01.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1343; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro250_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/55/18096879d7c9af18cd83c405292116]
Oct-22 19:30:01.655 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.655 [Task submitter] INFO  nextflow.Session - [d7/765029] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro253_trimmed_all-counts_tpm)
Oct-22 19:30:01.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1345; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro253_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/7650292c653682546e9022096126f9]
Oct-22 19:30:01.814 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.814 [Task submitter] INFO  nextflow.Session - [d3/263a92] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro247_trimmed_all-counts_tpm)
Oct-22 19:30:01.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1347; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro247_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d3/263a921f4474044aaa974a05ff7743]
Oct-22 19:30:01.933 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:01.933 [Task submitter] INFO  nextflow.Session - [ea/07ad72] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro258_trimmed_all-counts_tpm)
Oct-22 19:30:02.068 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1346; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro258_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ea/07ad724f399462fe7555d31159ec62]
Oct-22 19:30:02.073 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:02.074 [Task submitter] INFO  nextflow.Session - [0e/c9149f] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro263_trimmed_all-counts_tpm)
Oct-22 19:30:02.184 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1348; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro263_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0e/c9149f95699a41a8affde6d380348d]
Oct-22 19:30:02.189 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:02.190 [Task submitter] INFO  nextflow.Session - [83/d96301] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro262_trimmed_all-counts_tpm)
Oct-22 19:30:02.301 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1349; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro262_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/83/d963013a29fd62d7af828bc93bb5bd]
Oct-22 19:30:02.306 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:02.306 [Task submitter] INFO  nextflow.Session - [1a/24b6dd] Submitted process > GENERATE_DEPTHFILE_STATS (RNAneuro288_trimmed_accepted_hits_ncRNAs_sorted)
Oct-22 19:30:03.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1250; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro265_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/a4e3645bfc13a5948ee293df3ada73]
Oct-22 19:30:03.651 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:03.651 [Task submitter] INFO  nextflow.Session - [07/32384b] Submitted process > DATA_TRANSFORMATIONS
Oct-22 19:30:04.955 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1350; name: GENERATE_DEPTHFILE_STATS (RNAneuro288_trimmed_accepted_hits_ncRNAs_sorted); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1a/24b6dd1754a59526d99a63129a9f99]
Oct-22 19:30:04.970 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:04.970 [Task submitter] INFO  nextflow.Session - [df/f6e881] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro264_trimmed_all-counts_tpm)
Oct-22 19:30:05.234 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1352; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro264_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/df/f6e881e2fd4c3341842c80fc7ade0b]
Oct-22 19:30:05.277 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:05.277 [Task submitter] INFO  nextflow.Session - [1f/d53e1b] Submitted process > GENERATE_RESULTS_PDF
Oct-22 19:30:07.478 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1338; name: STACKED_BARPLOTS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/89/2305f9c271e4faa9f954017e133098]
Oct-22 19:30:07.483 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:07.483 [Task submitter] INFO  nextflow.Session - [16/20d53c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro265_trimmed_all-counts_tpm)
Oct-22 19:30:07.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1354; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro265_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/16/20d53c6b94f79544049df2df49a28e]
Oct-22 19:30:16.384 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1296; name: PLOT_TSRNA_LENGTHS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/0a/8c23a0c16a8d2116198a1456592b2c]
Oct-22 19:30:23.893 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 26 -- submitted tasks are shown below
~> TaskHandler[id: 1254; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro267_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/fea9d7b987115701ccb42aa462ae26]
~> TaskHandler[id: 1252; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro266_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/9c8737fe5daa91da8f2a41a954433b]
~> TaskHandler[id: 1255; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro268_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/0ab4e3341edb47a16c0da2a01b4cb8]
~> TaskHandler[id: 1262; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro269_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/e80334e4cba495dd93cbd4bcbe063b]
~> TaskHandler[id: 1265; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro271_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/65/b3532374101bb97e2bdb0c8fa562d9]
~> TaskHandler[id: 1264; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro270_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/2e8a6c7826dca26328012a444a67ed]
~> TaskHandler[id: 1271; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro272_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/2453e52825c28a715b1c3b8d95998c]
~> TaskHandler[id: 1273; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro273_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/64315bc325964d3f750843d825d6c3]
~> TaskHandler[id: 1275; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro274_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/5a0461b99b356d12b7238744c4ee80]
~> TaskHandler[id: 1277; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro276_trimmed_all-counts); status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d1/df5dfcb389ab075a7e3a0c51df9745]
.. remaining tasks omitted.
Oct-22 19:30:26.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1254; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro267_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/43/fea9d7b987115701ccb42aa462ae26]
Oct-22 19:30:26.904 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:26.904 [Task submitter] INFO  nextflow.Session - [7c/3b11af] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro267_trimmed_all-counts_tpm)
Oct-22 19:30:27.061 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1355; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro267_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7c/3b11af7be1acdcb3226546e94cbca4]
Oct-22 19:30:29.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1252; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro266_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/69/9c8737fe5daa91da8f2a41a954433b]
Oct-22 19:30:29.779 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:29.779 [Task submitter] INFO  nextflow.Session - [d9/21feb6] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro266_trimmed_all-counts_tpm)
Oct-22 19:30:29.922 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1356; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro266_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d9/21feb6ae66845baa75ade70a4a3534]
Oct-22 19:30:30.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1255; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro268_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8e/0ab4e3341edb47a16c0da2a01b4cb8]
Oct-22 19:30:30.737 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:30.738 [Task submitter] INFO  nextflow.Session - [54/474c76] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro268_trimmed_all-counts_tpm)
Oct-22 19:30:30.851 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1357; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro268_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/474c766081d139d0d392585fb158fb]
Oct-22 19:30:31.269 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1283; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro280_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/f2bf53881ad84e7562b5fc36bbc4c2]
Oct-22 19:30:31.280 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.281 [Task submitter] INFO  nextflow.Session - [fc/d6f220] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro280_trimmed_all-counts_tpm)
Oct-22 19:30:31.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1262; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro269_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7d/e80334e4cba495dd93cbd4bcbe063b]
Oct-22 19:30:31.310 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.310 [Task submitter] INFO  nextflow.Session - [3a/7e136a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro269_trimmed_all-counts_tpm)
Oct-22 19:30:31.406 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1358; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro280_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/fc/d6f22063a1b1cf4a66121c409ae7eb]
Oct-22 19:30:31.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1359; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro269_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/7e136acb0f471d2f6fbc684babc237]
Oct-22 19:30:31.495 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1276; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro275_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/33/8e7a86d1dfd0231ca4e2ecd0a52b88]
Oct-22 19:30:31.505 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.505 [Task submitter] INFO  nextflow.Session - [b0/0232f6] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro275_trimmed_all-counts_tpm)
Oct-22 19:30:31.511 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1264; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro270_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/8b/2e8a6c7826dca26328012a444a67ed]
Oct-22 19:30:31.522 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.522 [Task submitter] INFO  nextflow.Session - [38/9566e6] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro270_trimmed_all-counts_tpm)
Oct-22 19:30:31.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1265; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro271_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/65/b3532374101bb97e2bdb0c8fa562d9]
Oct-22 19:30:31.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1279; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro277_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4c/15eb0866624d531691e74613ed97b3]
Oct-22 19:30:31.601 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.601 [Task submitter] INFO  nextflow.Session - [07/4b95f7] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro271_trimmed_all-counts_tpm)
Oct-22 19:30:31.604 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.604 [Task submitter] INFO  nextflow.Session - [c3/f4766e] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro277_trimmed_all-counts_tpm)
Oct-22 19:30:31.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1360; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro275_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b0/0232f63aa2d793f7de843ba4336185]
Oct-22 19:30:31.645 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1361; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro270_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/38/9566e69391d5d1e606ca85940ba64d]
Oct-22 19:30:31.661 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1290; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro286_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5c/67960e7acb81863bd5dc111c255762]
Oct-22 19:30:31.668 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.668 [Task submitter] INFO  nextflow.Session - [f3/82e404] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro286_trimmed_all-counts_tpm)
Oct-22 19:30:31.679 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1273; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro273_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/ba/64315bc325964d3f750843d825d6c3]
Oct-22 19:30:31.687 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.687 [Task submitter] INFO  nextflow.Session - [1d/42af3c] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro273_trimmed_all-counts_tpm)
Oct-22 19:30:31.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1362; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro271_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/4b95f7df0f20a1e1890e6f09c85f7b]
Oct-22 19:30:31.718 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1363; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro277_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c3/f4766eee32bb8326ebc30311cb1c32]
Oct-22 19:30:31.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1277; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro276_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d1/df5dfcb389ab075a7e3a0c51df9745]
Oct-22 19:30:31.786 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1364; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro286_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f3/82e404eba372e53e699f3aaec2bfcd]
Oct-22 19:30:31.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1280; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro278_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/c2/de0a384cc0503a5b7e0e7420bfa524]
Oct-22 19:30:31.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1365; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro273_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/42af3c363e32568cd89d6c96084eda]
Oct-22 19:30:31.819 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.819 [Task submitter] INFO  nextflow.Session - [6e/ff1f0d] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro276_trimmed_all-counts_tpm)
Oct-22 19:30:31.821 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.821 [Task submitter] INFO  nextflow.Session - [74/1a48e7] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro278_trimmed_all-counts_tpm)
Oct-22 19:30:31.828 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1287; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro283_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/78/94a95ad063d65599ff17f024ffcd84]
Oct-22 19:30:31.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1282; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro279_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/95/a6ec6b9a34355d6fe9590970845c5d]
Oct-22 19:30:31.868 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.869 [Task submitter] INFO  nextflow.Session - [7e/122ed2] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro283_trimmed_all-counts_tpm)
Oct-22 19:30:31.874 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.874 [Task submitter] INFO  nextflow.Session - [a4/015a11] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro279_trimmed_all-counts_tpm)
Oct-22 19:30:31.881 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1288; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro284_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a7/4f31e0e97e99911878026eeb922a83]
Oct-22 19:30:31.890 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.890 [Task submitter] INFO  nextflow.Session - [9f/d9f9c2] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro284_trimmed_all-counts_tpm)
Oct-22 19:30:31.902 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1291; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro287_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/91/691a253f85137db58c2b3a12772224]
Oct-22 19:30:31.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1367; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro278_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/74/1a48e7594e6952891a69bfa1c5a3c2]
Oct-22 19:30:31.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1286; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro282_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9a/f382217f90781e16e8a4761701829e]
Oct-22 19:30:31.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1366; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro276_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/6e/ff1f0dbd0292e6d2489b4c41cf2bc7]
Oct-22 19:30:31.939 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.939 [Task submitter] INFO  nextflow.Session - [b8/81d7db] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro287_trimmed_all-counts_tpm)
Oct-22 19:30:31.943 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.943 [Task submitter] INFO  nextflow.Session - [57/d7ef03] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro282_trimmed_all-counts_tpm)
Oct-22 19:30:31.966 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1369; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro279_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a4/015a1193ffacde7051b57f74c740cd]
Oct-22 19:30:31.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1292; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro288_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/96/72696b3abb49972954a8a4053dd46d]
Oct-22 19:30:31.981 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1370; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro284_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9f/d9f9c28d52bec579d4c567c3929b00]
Oct-22 19:30:31.992 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:31.993 [Task submitter] INFO  nextflow.Session - [f4/884bf3] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro288_trimmed_all-counts_tpm)
Oct-22 19:30:32.001 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1368; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro283_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/7e/122ed252b29c5396e5706f772dcb47]
Oct-22 19:30:32.043 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1371; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro287_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b8/81d7db0b26bee0c872176def185ac7]
Oct-22 19:30:32.053 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1372; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro282_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/57/d7ef0340817df3fb32707897b5e96d]
Oct-22 19:30:32.066 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1284; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro281_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/88313f72d1ea79b13445c82ea5b334]
Oct-22 19:30:32.077 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1373; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro288_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/f4/884bf3e189761dc31386d47b1c0f24]
Oct-22 19:30:32.114 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:32.115 [Task submitter] INFO  nextflow.Session - [79/d1de25] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro281_trimmed_all-counts_tpm)
Oct-22 19:30:32.131 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1271; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro272_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/36/2453e52825c28a715b1c3b8d95998c]
Oct-22 19:30:32.142 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1289; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro285_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1d/e89d3510d7c1a574b58d1d1fb3d62a]
Oct-22 19:30:32.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1275; name: RAW_COUNTS_TO_NORM_COUNTS (RNAneuro274_trimmed_all-counts); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/54/5a0461b99b356d12b7238744c4ee80]
Oct-22 19:30:32.201 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:32.202 [Task submitter] INFO  nextflow.Session - [53/6939b7] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro272_trimmed_all-counts_tpm)
Oct-22 19:30:32.206 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:32.206 [Task submitter] INFO  nextflow.Session - [cf/d71c25] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro285_trimmed_all-counts_tpm)
Oct-22 19:30:32.210 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:32.210 [Task submitter] INFO  nextflow.Session - [e1/6b1a3a] Submitted process > COUNTS_TO_COLLAPSED_COUNTS (RNAneuro274_trimmed_all-counts_tpm)
Oct-22 19:30:32.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1374; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro281_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/79/d1de25bcf7b4fdda1d1c74b5871b0c]
Oct-22 19:30:32.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1376; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro285_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/cf/d71c2582cb9bf404262d99ae02c67d]
Oct-22 19:30:32.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1375; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro272_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/53/6939b77c5f0f6616e37bcb71188809]
Oct-22 19:30:32.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1377; name: COUNTS_TO_COLLAPSED_COUNTS (RNAneuro274_trimmed_all-counts_tpm); status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e1/6b1a3abac9634ff6411ce4fa8b5c39]
Oct-22 19:30:32.472 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:32.472 [Task submitter] INFO  nextflow.Session - [a2/5ae992] Submitted process > GENERATE_COUNT_DATAFRAME
Oct-22 19:30:32.484 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:32.484 [Task submitter] INFO  nextflow.Session - [e4/0d58c3] Submitted process > DESEQ2
Oct-22 19:30:37.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1379; name: GENERATE_COUNT_DATAFRAME; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/a2/5ae99291fd3347d4dbcf095305a85c]
Oct-22 19:30:37.652 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:30:37.652 [Task submitter] INFO  nextflow.Session - [78/e75af2] Submitted process > BARPLOTS
Oct-22 19:30:51.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1380; name: BARPLOTS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/78/e75af2c7517d0245ec2063a4815de4]
Oct-22 19:31:24.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1353; name: GENERATE_RESULTS_PDF; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/1f/d53e1b1990d6bf572768e0e01e98b8]
Oct-22 19:31:34.196 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1378; name: DESEQ2; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/e4/0d58c33564ac067309e99df5e940ec]
Oct-22 19:31:34.496 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1295; name: PREDICT_TSRNA_TYPE; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/50/93511fcd7db697c9967a9e72738165]
Oct-22 19:35:23.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 1351; name: DATA_TRANSFORMATIONS; status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/32384b7a776f2feeebbcca04f589f8]
Oct-22 19:40:23.985 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 1351; name: DATA_TRANSFORMATIONS; status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/32384b7a776f2feeebbcca04f589f8]
Oct-22 19:42:55.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1351; name: DATA_TRANSFORMATIONS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/07/32384b7a776f2feeebbcca04f589f8]
Oct-22 19:42:55.955 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:42:55.956 [Task submitter] INFO  nextflow.Session - [4e/d526a9] Submitted process > DISTRIBUTION_SCORE
Oct-22 19:42:55.957 [Task monitor] DEBUG n.util.BlockingThreadExecutorFactory - Thread pool name=FileTransfer; maxThreads=84; maxQueueSize=252; keepAlive=1m
Oct-22 19:42:55.964 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:42:55.964 [Task submitter] INFO  nextflow.Session - [b3/d3a798] Submitted process > FISHERS_METHOD
Oct-22 19:42:55.977 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:42:55.978 [Task submitter] INFO  nextflow.Session - [9c/79e499] Submitted process > CLEAVAGE_SCORE
Oct-22 19:42:55.988 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:42:55.989 [Task submitter] INFO  nextflow.Session - [d7/0cfc45] Submitted process > SLOPE_SCORE
Oct-22 19:42:56.002 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:42:56.003 [Task submitter] INFO  nextflow.Session - [17/a0a125] Submitted process > PREDICT_TSRNA_TYPE_GROUPS
Oct-22 19:42:58.870 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1383; name: PREDICT_TSRNA_TYPE_GROUPS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/17/a0a125e27f174f9949f2592cc0b362]
Oct-22 19:44:39.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1385; name: CLEAVAGE_SCORE; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/9c/79e499e597ab4093e5316f9fd228b1]
Oct-22 19:44:54.444 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1381; name: DISTRIBUTION_SCORE; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/4e/d526a9a993d0ca9c5b207917ffe03e]
Oct-22 19:45:24.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below
~> TaskHandler[id: 1382; name: FISHERS_METHOD; status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b3/d3a79838d3699bb6b2ffb0c6c0babd]
~> TaskHandler[id: 1384; name: SLOPE_SCORE; status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/0cfc45fe998e7def96731869859b02]
Oct-22 19:45:32.290 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1384; name: SLOPE_SCORE; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/d7/0cfc45fe998e7def96731869859b02]
Oct-22 19:50:24.133 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 1382; name: FISHERS_METHOD; status: RUNNING; exit: -; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b3/d3a79838d3699bb6b2ffb0c6c0babd]
Oct-22 19:51:13.267 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1382; name: FISHERS_METHOD; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/b3/d3a79838d3699bb6b2ffb0c6c0babd]
Oct-22 19:51:13.292 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:51:13.292 [Task submitter] INFO  nextflow.Session - [08/754529] Submitted process > VENN_DIAGRAM
Oct-22 19:51:13.297 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:51:13.297 [Task submitter] INFO  nextflow.Session - [99/5f9856] Submitted process > RESULTS_TABLE
Oct-22 19:51:14.577 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1386; name: RESULTS_TABLE; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/99/5f98567ada4923c4ca72b610bae8bc]
Oct-22 19:51:14.592 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:51:14.592 [Task submitter] INFO  nextflow.Session - [44/0def28] Submitted process > COMBINED_SCORE
Oct-22 19:51:15.110 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1387; name: VENN_DIAGRAM; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/08/754529c92977ea8b6496aec03b61c5]
Oct-22 19:51:16.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1388; name: COMBINED_SCORE; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/44/0def282bc1decbbc2c874dcd0ca181]
Oct-22 19:51:16.337 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:51:16.337 [Task submitter] INFO  nextflow.Session - [5f/c55b1c] Submitted process > PLOT_NCRNAS
Oct-22 19:51:16.363 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:51:16.363 [Task submitter] INFO  nextflow.Session - [2d/e49dfd] Submitted process > PLOT_TRNAS
Oct-22 19:51:38.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1390; name: PLOT_TRNAS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2d/e49dfd38bf92ddd2956a6225c25c8b]
Oct-22 19:52:52.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1389; name: PLOT_NCRNAS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/5f/c55b1cbf3ebe7c2500666b3cb3d61c]
Oct-22 19:52:52.708 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:52:52.709 [Task submitter] INFO  nextflow.Session - [45/24f58b] Submitted process > GENERATE_RESULTS_PDF_GROUPS
Oct-22 19:52:52.719 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:52:52.719 [Task submitter] INFO  nextflow.Session - [3a/b46b01] Submitted process > PUBLISH_FILES
Oct-22 19:52:54.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1391; name: GENERATE_RESULTS_PDF_GROUPS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/45/24f58b32ca70029470e8b93c825334]
Oct-22 19:52:54.886 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-22 19:52:54.886 [Task submitter] INFO  nextflow.Session - [2e/ba4dee] Submitted process > ORGANISE_RESULTS_GROUPS
Oct-22 19:52:58.028 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1393; name: ORGANISE_RESULTS_GROUPS; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/2e/ba4deeb798d072b0497e597348d2da]
Oct-22 19:53:01.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1392; name: PUBLISH_FILES; status: COMPLETED; exit: 0; error: -; workDir: /mnt/sdd2/data/Utrecht/T1_vs_T2_orig/work/3a/b46b01679ada243f7d85e5089748ac]
Oct-22 19:53:01.594 [main] DEBUG nextflow.Session - Session await > all process finished
Oct-22 19:53:01.596 [main] DEBUG nextflow.Session - Session await > all barriers passed
Oct-22 19:53:01.610 [main] DEBUG nextflow.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=1393; failedCount=0; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=3d 32m 51s; failedDuration=0ms; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=28; peakCpus=28; peakMemory=50 GB; ]
Oct-22 19:53:01.650 [main] DEBUG nextflow.CacheDB - Closing CacheDB done
Oct-22 19:53:01.704 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
